Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 2.2e-94 349.4 236 100.0
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 3.9e-75 285.4 236 85.6
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 1.5e-74 283.5 237 84.8
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 2.0e-74 283.1 236 85.2
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 9.7e-74 280.8 236 84.7
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 3.8e-70 268.9 237 84.0
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 1.8e-67 260.0 237 80.2
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 2.6e-66 256.1 238 79.8
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 7.4e-66 254.6 237 81.9
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 9.7e-66 254.2 237 81.9
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 4.8e-65 251.9 253 75.5
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 2.4e-64 249.6 237 79.7
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 7.0e-64 248.1 237 80.6
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 1.5e-63 246.9 239 78.2
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 2.0e-63 246.5 233 79.0
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 4.5e-63 245.4 237 79.3
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 1.0e-62 244.2 237 78.9
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 1.7e-62 243.4 237 78.5
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 1.7e-62 243.4 238 79.0
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 2.2e-62 243.0 238 77.7
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 2.9e-62 242.7 237 78.5
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 3.8e-62 242.3 236 78.0
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 6.5e-62 241.5 248 65.3
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 1.5e-61 240.4 237 76.4
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 1.9e-61 240.0 239 77.4
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.2e-60 237.3 232 75.9
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 8.0e-60 234.6 239 75.7
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 8.0e-60 234.6 237 75.9
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 1.0e-59 234.2 237 74.3
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 1.4e-59 233.8 237 77.6
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 1.4e-59 233.8 237 75.9
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 4.0e-59 232.3 238 76.5
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 2.0e-58 229.9 236 75.4
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 2.0e-58 229.9 236 75.8
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 2.6e-58 229.6 239 76.2
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.6e-58 229.6 237 75.5
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 5.7e-58 228.4 237 76.8
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 7.5e-58 228.0 234 77.8
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 9.7e-58 227.6 241 75.9
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 9.7e-58 227.6 238 73.9
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 1.8e-56 223.4 238 76.5
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.8e-56 223.4 238 76.5
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 1.8e-56 223.4 238 72.7
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 1.8e-56 223.4 261 58.2
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 2.4e-56 223.0 241 74.3
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.1e-56 222.6 238 76.5
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.1e-56 222.2 239 73.6
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 7.0e-56 221.5 231 77.5
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 7.0e-56 221.5 211 81.0
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 9.1e-56 221.1 242 74.4
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.2e-55 220.7 195 85.1
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.0e-55 219.9 192 87.0
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 2.0e-55 219.9 240 75.0
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 2.0e-55 219.9 241 74.3
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 3.5e-55 219.2 236 62.3
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.5e-55 219.2 241 75.9
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 7.7e-55 218.0 243 73.7
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 1.3e-54 217.2 243 73.7
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 1.7e-54 216.9 242 72.7
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 8.5e-54 214.5 192 85.9
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 8.5e-54 214.5 183 87.4
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.1e-53 214.2 236 75.0
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 1.1e-53 214.2 191 85.9
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.2e-53 212.6 257 49.0
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 4.2e-53 212.2 157 70.1
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 4.2e-53 212.2 239 74.5
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 5.5e-53 211.8 192 84.4
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 7.2e-53 211.5 157 68.8
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 7.2e-53 211.5 241 73.9
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 7.2e-53 211.5 205 80.5
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 7.2e-53 211.5 238 73.5
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 9.4e-53 211.1 239 72.8
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 9.4e-53 211.1 238 73.1
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 1.6e-52 210.3 240 70.8
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 1.6e-52 210.3 237 72.6
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 3.6e-52 209.1 243 72.8
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 3.6e-52 209.1 196 82.7
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 4.7e-52 208.8 183 84.2
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 4.7e-52 208.8 211 79.6
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 6.1e-52 208.4 238 71.8
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 1.0e-51 207.6 237 72.6
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 1.0e-51 207.6 240 70.4
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.0e-51 207.6 236 72.9
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 2.3e-51 206.5 197 82.7
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 3.0e-51 206.1 237 72.2
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 3.0e-51 206.1 202 80.7
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.0e-51 205.7 202 64.9
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 5.2e-51 205.3 241 68.5
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 3.4e-50 202.6 206 80.6
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 5.7e-50 201.8 240 68.3
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 1.3e-49 200.7 213 75.1
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 2.8e-49 199.5 238 70.2
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 1.1e-48 197.6 240 69.2
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 5.4e-48 195.3 206 76.7
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 7.0e-48 194.9 206 76.7
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 7.0e-48 194.9 206 76.7
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 1.2e-47 194.1 240 67.9
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 2.0e-47 193.4 122 75.4
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.5e-47 192.6 257 46.3
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 5.9e-47 191.8 208 54.3
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 5.9e-47 191.8 208 54.3
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 3.8e-46 189.1 243 68.3
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 3.8e-46 189.1 239 68.2
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.1e-45 187.6 238 69.7
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 1.1e-45 187.6 182 81.9
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 4.2e-45 185.7 204 77.0
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.4e-43 180.6 126 69.0
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.3e-43 179.9 126 69.0
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.3e-43 179.9 126 69.0
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.2e-43 178.7 237 50.2
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 5.2e-43 178.7 236 66.1
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.5e-42 177.2 125 68.0
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.4e-42 175.6 126 67.5
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.3e-41 174.1 128 66.4
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 4.9e-41 172.2 245 64.5
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.4e-40 170.6 127 67.7
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.1e-40 169.1 237 49.4
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 5.4e-40 168.7 164 87.2
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 9.1e-40 167.9 204 69.1
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 7.7e-39 164.9 156 89.7
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 7.7e-39 164.9 169 84.0
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 1.1e-37 161.0 239 64.0
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 3.7e-33 146.0 129 56.6
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 4.1e-32 142.5 205 60.5
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.5e-31 139.4 75 88.0
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 1.3e-30 137.5 105 64.8
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 6.6e-30 135.2 156 78.2
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 3.1e-19 99.8 62 72.6
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 2.3e-14 83.6 81 55.6
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 3.1e-11 73.2 114 78.1
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 2.0e-10 70.5 160 40.6
FAN01G3091 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.9e-06 56.2 98 41.8


User provided reference genes

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