Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 2.0e-226 788.9 441 100.0
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 1.0e-140 504.2 522 59.6
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 1.9e-123 446.8 370 70.0
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 3.2e-118 429.5 339 70.8
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 6.0e-101 372.1 446 54.5
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 3.9e-100 369.4 447 55.3
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 2.1e-98 363.6 445 53.9
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 3.6e-98 362.8 451 54.5
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 1.3e-95 354.4 455 53.8
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 1.1e-91 341.3 443 51.0
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 2.5e-91 340.1 444 50.5
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 4.3e-91 339.3 444 51.1
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 5.6e-91 339.0 445 51.9
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 9.6e-91 338.2 444 51.4
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 2.1e-90 337.0 444 51.6
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 1.8e-89 334.0 450 50.7
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 8.9e-89 331.6 460 49.8
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 2.0e-88 330.5 480 48.5
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 1.1e-86 324.7 445 49.2
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 1.1e-86 324.7 455 49.0
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 3.2e-86 323.2 444 50.9
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 3.5e-85 319.7 445 49.2
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 4.6e-85 319.3 445 50.6
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 6.0e-85 318.9 447 49.9
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 1.3e-84 317.8 442 49.1
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 2.3e-84 317.0 449 47.2
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 3.0e-84 316.6 445 50.8
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 6.6e-84 315.5 446 49.3
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 1.1e-83 314.7 451 49.9
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 1.5e-83 314.3 454 48.2
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 5.6e-83 312.4 443 49.7
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 7.3e-83 312.0 445 50.1
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.6e-82 310.8 449 47.2
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 2.8e-82 310.1 449 47.0
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 3.6e-82 309.7 445 50.1
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 2.4e-81 307.0 451 46.8
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 9.0e-81 305.1 444 49.3
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 2.6e-80 303.5 451 47.9
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 1.1e-78 298.1 445 49.0
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 1.4e-78 297.7 451 48.6
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 5.4e-78 295.8 444 46.4
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 5.4e-78 295.8 453 48.3
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 1.2e-77 294.7 445 49.2
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 3.5e-77 293.1 317 57.7
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 3.5e-77 293.1 408 46.3
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 3.5e-77 293.1 308 57.5
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 3.9e-76 289.7 447 46.5
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 8.7e-76 288.5 443 46.5
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 2.8e-74 283.5 300 58.0
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 1.1e-73 281.6 297 57.9
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 1.4e-73 281.2 445 45.6
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 1.4e-73 281.2 448 46.4
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 1.5e-72 277.7 298 54.7
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 3.4e-72 276.6 445 45.2
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 9.9e-72 275.0 447 44.7
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 1.3e-71 274.6 446 45.7
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 7.1e-70 268.9 302 56.0
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 7.1e-70 268.9 460 45.4
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 1.6e-69 267.7 455 44.4
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 3.5e-69 266.5 448 44.4
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 6.0e-69 265.8 365 49.6
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 1.8e-68 264.2 444 45.0
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 5.1e-68 262.7 453 44.6
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 6.7e-68 262.3 365 50.7
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 1.6e-66 257.7 448 45.5
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 2.8e-66 256.9 457 43.8
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 4.0e-65 253.1 355 50.7
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 5.3e-65 252.7 449 44.8
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 9.0e-65 251.9 447 43.2
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 2.0e-64 250.8 442 43.7
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 3.4e-64 250.0 342 48.8
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 5.8e-64 249.2 357 47.6
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 5.5e-62 242.7 302 50.7
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 1.3e-60 238.0 451 44.1
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 3.9e-60 236.5 444 42.8
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 1.1e-59 235.0 460 42.2
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 1.5e-59 234.6 448 42.6
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 9.6e-59 231.9 460 42.0
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 1.3e-58 231.5 471 41.8
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.6e-58 231.1 260 54.6
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 1.4e-57 228.0 189 66.1
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 1.4e-57 228.0 331 46.5
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 9.0e-57 225.3 331 46.2
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 1.0e-55 221.9 340 46.5
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 2.9e-55 220.3 331 45.0
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 3.8e-55 219.9 522 38.3
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 5.0e-55 219.5 338 45.9
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 1.4e-54 218.0 449 41.9
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.9e-54 217.6 219 58.0
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 1.2e-53 214.9 461 41.4
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 4.6e-53 213.0 411 39.9
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 1.3e-52 211.5 471 40.6
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 3.0e-52 210.3 435 41.1
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 3.0e-52 210.3 376 42.6
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 1.1e-51 208.4 212 58.0
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 7.4e-51 205.7 406 38.7
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 3.7e-50 203.4 314 44.9
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 4.8e-50 203.0 298 47.0
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 1.8e-49 201.1 337 42.1
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 5.3e-49 199.5 388 38.1
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 6.9e-49 199.1 243 51.4
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 1.5e-48 198.0 441 36.5
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 2.6e-48 197.2 427 39.6
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 1.7e-47 194.5 269 46.5
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 2.9e-47 193.7 494 36.8
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 3.8e-47 193.4 497 36.4
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 1.4e-46 191.4 447 39.4
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 4.2e-46 189.9 302 44.7
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 2.3e-44 184.1 464 37.1
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 2.2e-42 177.6 158 62.7
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 4.1e-41 173.3 215 48.4
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 3.0e-36 157.1 162 58.0
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 3.7e-34 150.2 221 47.1
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 9.1e-33 145.6 200 49.5
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 6.5e-31 139.4 468 32.7
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 1.9e-30 137.9 208 43.3
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 2.1e-29 134.4 215 44.2
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 2.8e-26 124.0 98 65.3
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 4.5e-24 116.7 416 33.7
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 1.3e-23 115.2 110 51.8
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 3.2e-22 110.5 202 41.1
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 7.2e-22 109.4 276 34.1
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 2.7e-21 107.5 145 44.1
Hma1.2p1_1235F.1_g269240 Hydrangea macrophylla HOM05D006277 ORTHO05D007673 8.8e-20 102.4 218 39.4
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 7.5e-19 99.4 476 30.9
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 3.1e-17 94.0 68 69.1
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 1.4e-12 78.6 49 69.4
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 5.4e-09 66.6 196 29.1
Ciclev10023238m.g Citrus clementina HOM05D006277 ORTHO05D007673 3.3e-06 57.4 46 56.5


User provided reference genes

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