Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 0.0e+00 1209.9 619 100.0
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 5.7e-291 1003.8 619 82.4
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 3.7e-274 948.0 623 77.7
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 9.1e-273 943.3 623 75.6
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 2.7e-272 941.8 621 78.3
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 2.7e-272 941.8 619 77.5
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 4.2e-270 934.5 621 77.1
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 7.2e-270 933.7 621 77.1
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 9.4e-270 933.3 621 76.5
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 2.7e-269 931.8 620 77.1
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 1.8e-268 929.1 621 76.3
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 6.8e-268 927.2 619 75.6
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 1.2e-267 926.4 620 76.3
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 7.5e-267 923.7 624 76.1
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 9.8e-267 923.3 621 76.3
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.3e-266 922.9 619 75.3
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.4e-265 919.5 621 75.2
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 2.0e-264 915.6 619 75.8
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 5.9e-264 914.1 619 75.3
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.3e-263 912.9 621 74.1
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 1.7e-263 912.5 624 75.5
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 2.2e-263 912.1 620 75.2
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 5.5e-262 907.5 623 74.5
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 7.2e-262 907.1 620 74.2
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 6.1e-261 904.0 620 75.6
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 8.0e-261 903.7 620 75.3
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 8.0e-261 903.7 620 75.3
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 4.0e-260 901.4 624 73.2
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 8.8e-260 900.2 621 74.1
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 2.0e-259 899.0 623 73.7
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 5.7e-259 897.5 624 73.6
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 1.1e-257 893.3 624 73.6
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 5.0e-255 884.4 622 73.8
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 8.0e-253 877.1 637 72.1
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 2.3e-252 875.5 621 71.5
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.3e-250 869.8 620 72.6
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 3.2e-249 865.1 619 72.2
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 5.4e-249 864.4 752 62.0
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 1.7e-247 859.4 624 71.0
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.7e-247 859.4 698 65.0
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 8.6e-247 857.1 621 70.2
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.9e-246 855.9 622 70.3
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 3.3e-246 855.1 623 70.9
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 1.6e-245 852.8 623 70.8
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.8e-244 849.4 575 75.5
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 3.1e-244 848.6 626 70.1
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 9.8e-243 843.6 621 70.7
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 1.3e-242 843.2 621 69.1
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.9e-241 839.3 620 69.4
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 2.4e-241 839.0 572 73.6
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 9.2e-241 837.0 621 67.5
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 3.5e-240 835.1 625 68.0
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.0e-239 833.6 622 66.4
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.7e-239 832.8 621 69.4
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 5.0e-239 831.2 621 69.6
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 5.0e-239 831.2 624 68.8
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 1.9e-238 829.3 616 70.0
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 2.5e-238 828.9 582 74.6
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.2e-237 826.6 622 65.8
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 2.8e-237 825.5 621 66.3
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 2.8e-237 825.5 624 68.4
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 4.7e-237 824.7 624 68.3
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 3.1e-236 822.0 623 66.9
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 3.4e-235 818.5 616 68.7
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 3.4e-235 818.5 622 65.8
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 4.4e-235 818.1 623 69.0
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 4.4e-235 818.1 608 70.4
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 7.5e-235 817.4 622 64.6
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 9.8e-235 817.0 622 65.8
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 9.8e-235 817.0 622 65.8
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 2.9e-234 815.5 622 65.6
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 6.4e-234 814.3 622 65.6
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 2.4e-233 812.4 623 65.5
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 7.1e-233 810.8 621 65.5
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 3.5e-232 808.5 620 67.9
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 3.5e-232 808.5 621 68.3
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 6.6e-231 804.3 621 68.0
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 6.2e-229 797.7 552 74.1
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 2.3e-228 795.8 616 68.3
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 1.3e-226 790.0 556 72.7
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 1.9e-225 786.2 623 65.2
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 9.6e-222 773.9 607 66.9
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 4.0e-220 768.5 605 66.4
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 9.9e-219 763.8 627 63.0
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 3.8e-218 761.9 627 63.0
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 3.5e-216 755.4 623 63.6
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 6.4e-210 734.6 509 76.4
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.4e-204 716.1 621 62.2
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 3.4e-195 685.6 627 59.8
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.8e-188 663.3 639 55.6
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 4.6e-184 648.7 619 57.2
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 3.4e-179 632.5 694 54.6
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 2.5e-169 599.7 683 48.6
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 4.8e-165 585.5 508 63.6
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.2e-163 580.9 624 52.7
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 6.3e-157 558.5 364 78.8
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.1e-156 557.8 387 72.9
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 3.5e-155 552.7 385 74.8
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 2.1e-152 543.5 357 76.5
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 2.7e-147 526.6 516 53.7
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 9.2e-140 501.5 368 70.9
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 1.2e-123 448.0 449 55.2
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 6.0e-123 445.7 256 88.3
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 6.0e-123 445.7 396 63.9
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 6.6e-114 415.6 256 80.9
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 5.8e-110 402.5 330 64.8
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 4.3e-105 386.3 255 75.3
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 9.6e-105 385.2 657 38.4
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 4.9e-101 372.9 243 74.9
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.7e-93 347.8 230 74.8
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 1.3e-85 321.6 180 85.0
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 5.6e-81 306.2 631 35.2
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 1.3e-69 268.5 227 65.2
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-67 260.8 218 66.1
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 3.7e-56 223.8 168 69.0
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 1.5e-49 201.8 158 65.2
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 5.3e-47 193.4 110 85.5
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 3.8e-45 187.2 110 84.5
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 6.5e-45 186.4 110 82.7
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 4.2e-44 183.7 112 79.5
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-43 181.0 110 80.9
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-42 179.1 115 76.5
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 5.7e-41 173.3 141 66.7
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 5.0e-37 160.2 148 55.4
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 5.2e-34 150.2 131 62.6
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 3.4e-33 147.5 99 73.7
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.1e-31 142.5 82 81.7
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 9.1e-31 139.4 89 73.0
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 5.0e-29 133.7 131 59.5
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 2.5e-28 131.3 424 27.4
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 2.8e-27 127.9 134 53.7
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 8.3e-24 116.3 69 81.2
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 1.1e-23 115.9 133 46.6
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 1.8e-23 115.2 81 64.2
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 7.0e-23 113.2 71 73.2
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 3.5e-22 110.9 67 77.6
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.1e-20 105.9 83 59.0
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 6.1e-19 100.1 67 68.7
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 4.9e-16 90.5 55 78.2
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 5.4e-15 87.0 153 43.1
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 2.5e-12 78.2 183 28.4
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 3.3e-12 77.8 183 28.4
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 5.6e-12 77.0 183 28.4
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 9.5e-12 76.3 39 92.3
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 9.5e-12 76.3 41 82.9
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 1.2e-11 75.9 183 29.0
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 1.6e-11 75.5 183 27.9
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 1.6e-11 75.5 183 27.9
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 2.1e-11 75.1 183 27.9
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 2.8e-11 74.7 183 27.9
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 3.6e-11 74.3 50 72.0
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 3.6e-11 74.3 175 26.3
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 8.0e-11 73.2 183 26.8
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 1.4e-10 72.4 40 87.5
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 1.4e-10 72.4 183 27.3
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 3.1e-10 71.2 183 26.8
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 3.1e-10 71.2 183 26.8
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 5.2e-10 70.5 183 26.2
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 9.8e-09 66.2 182 24.7
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 1.3e-08 65.9 40 67.5
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.7e-08 65.5 186 25.8
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 2.2e-08 65.1 194 26.8
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 2.2e-08 65.1 45 68.9
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 1.4e-07 62.4 151 25.8
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 1.9e-07 62.0 182 26.4
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 7.0e-07 60.1 202 22.8
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 7.0e-07 60.1 45 66.7


User provided reference genes

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