Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 1.8e-97 359.4 196 100.0
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.1e-65 253.8 192 74.5
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 7.3e-51 204.5 205 62.4
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.6e-45 186.8 214 53.7
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 1.7e-44 183.3 207 54.1
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 3.9e-44 182.2 209 54.5
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 5.1e-44 181.8 211 55.0
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 8.7e-44 181.0 224 50.4
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 8.7e-44 181.0 191 56.5
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.1e-43 180.6 211 52.1
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.5e-43 180.3 206 52.4
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 1.9e-43 179.9 210 53.8
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 2.5e-43 179.5 206 51.5
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 2.5e-43 179.5 213 54.5
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 3.3e-43 179.1 214 53.7
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 4.3e-43 178.7 211 53.6
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 4.3e-43 178.7 212 52.4
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 7.3e-43 177.9 215 51.6
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 9.6e-43 177.6 220 50.5
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.3e-42 177.2 207 51.7
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.6e-42 176.8 212 51.4
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 2.8e-42 176.0 216 54.2
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.6e-42 175.6 207 51.7
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.8e-42 175.3 223 50.2
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.8e-42 175.3 223 50.2
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 6.2e-42 174.9 207 52.2
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 6.2e-42 174.9 206 54.4
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 8.1e-42 174.5 213 51.2
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 1.4e-41 173.7 152 68.4
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 3.1e-41 172.6 198 55.1
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 4.0e-41 172.2 200 52.5
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 5.3e-41 171.8 210 52.4
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 6.9e-41 171.4 215 54.0
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 9.0e-41 171.0 211 52.1
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 9.0e-41 171.0 223 49.8
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 2.0e-40 169.9 228 50.4
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.0e-40 169.9 207 50.7
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 2.0e-40 169.9 206 49.5
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 3.4e-40 169.1 220 48.6
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 5.8e-40 168.3 192 53.6
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 5.8e-40 168.3 199 54.3
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.9e-40 167.5 227 48.0
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 9.9e-40 167.5 227 48.0
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 9.9e-40 167.5 125 66.4
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.3e-39 167.2 211 51.2
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 1.7e-39 166.8 198 51.5
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.7e-39 166.8 199 50.8
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 2.2e-39 166.4 215 47.4
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.2e-39 166.4 203 50.2
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.9e-39 166.0 217 50.2
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 2.9e-39 166.0 210 51.4
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.8e-39 165.6 227 44.1
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 3.8e-39 165.6 220 48.6
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 4.9e-39 165.2 125 66.4
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 6.4e-39 164.9 124 64.5
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 8.4e-39 164.5 125 64.0
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.1e-38 164.1 230 48.7
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.1e-38 164.1 207 48.8
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 1.1e-38 164.1 207 48.8
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 1.4e-38 163.7 199 55.3
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 1.4e-38 163.7 125 66.4
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 1.9e-38 163.3 234 47.0
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.9e-38 163.3 124 65.3
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.9e-38 163.3 227 46.7
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.9e-38 163.3 209 53.1
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 3.2e-38 162.5 210 51.4
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 4.2e-38 162.2 197 53.8
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.2e-38 162.2 227 46.7
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 5.4e-38 161.8 227 47.6
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 9.3e-38 161.0 216 52.3
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 2.1e-37 159.8 124 66.1
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 2.7e-37 159.5 215 48.8
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 2.7e-37 159.5 204 49.5
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 2.7e-37 159.5 195 52.3
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 3.5e-37 159.1 113 68.1
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 4.6e-37 158.7 192 52.6
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 4.6e-37 158.7 124 65.3
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 7.9e-37 157.9 202 49.5
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 1.0e-36 157.5 225 47.6
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 1.0e-36 157.5 207 49.8
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.3e-36 157.1 125 62.4
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.8e-36 156.8 125 62.4
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.8e-36 156.8 125 62.4
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 1.8e-36 156.8 125 64.0
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 2.3e-36 156.4 125 61.6
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 2.3e-36 156.4 125 61.6
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 2.3e-36 156.4 198 50.5
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 2.3e-36 156.4 209 47.8
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 2.3e-36 156.4 116 66.4
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 3.0e-36 156.0 210 49.5
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 5.1e-36 155.2 125 63.2
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.1e-36 155.2 125 63.2
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 5.1e-36 155.2 211 49.3
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 5.1e-36 155.2 203 51.2
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.9e-35 153.3 125 61.6
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.9e-35 153.3 124 60.5
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 3.3e-35 152.5 125 60.8
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.3e-35 152.5 225 45.8
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 7.4e-35 151.4 125 60.8
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 7.4e-35 151.4 125 60.8
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 7.4e-35 151.4 124 60.5
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 9.6e-35 151.0 125 60.0
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 9.6e-35 151.0 203 49.8
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 1.3e-34 150.6 105 70.5
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 1.6e-34 150.2 189 50.8
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 1.6e-34 150.2 104 72.1
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 2.1e-34 149.8 125 60.0
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 2.1e-34 149.8 125 60.8
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 3.7e-34 149.1 204 47.1
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 3.7e-34 149.1 125 59.2
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 1.1e-33 147.5 140 60.0
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 1.4e-33 147.1 205 48.3
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 1.8e-33 146.7 116 64.7
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 3.1e-33 146.0 155 56.8
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 4.0e-33 145.6 207 47.8
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 9.0e-33 144.4 110 66.4
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 2.0e-32 143.3 119 63.9
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 5.8e-32 141.7 114 65.8
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.9e-30 136.7 95 70.5
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.5e-30 136.3 205 45.4
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 3.2e-30 136.0 200 46.0
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 2.7e-29 132.9 107 65.4
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 6.0e-29 131.7 181 48.6
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 3.9e-28 129.0 112 59.8
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 5.1e-28 128.6 111 59.5
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-27 127.1 105 61.9
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 2.5e-27 126.3 125 52.0
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 3.7e-26 122.5 181 45.3
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 3.1e-25 119.4 122 51.6
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 4.0e-25 119.0 150 46.0
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 3.4e-24 115.9 101 54.5
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.8e-24 115.2 107 57.0
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 1.3e-23 114.0 194 38.1
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 7.1e-22 108.2 118 50.0
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 2.7e-21 106.3 101 54.5
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.0e-20 104.4 125 46.4
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 1.3e-20 104.0 183 43.7
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.3e-20 103.2 165 44.8
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 2.5e-19 99.8 111 49.5
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 2.5e-19 99.8 111 49.5
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 9.7e-19 97.8 98 53.1
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-18 97.4 79 62.0
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.1e-17 94.4 193 39.4
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 9.0e-17 91.3 120 45.0
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 1.5e-16 90.5 176 43.2
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 2.0e-16 90.1 162 43.2
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.6e-13 79.3 81 51.9
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 4.6e-13 79.0 48 75.0
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 7.9e-13 78.2 139 43.9
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 1.3e-10 70.9 149 38.3
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 2.8e-10 69.7 102 37.3
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 8.2e-10 68.2 111 36.9
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.8e-09 67.0 132 40.9
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 5.9e-08 62.0 65 46.2
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 7.7e-08 61.6 41 63.4
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 6.5e-07 58.5 37 67.6
Cfa024000 Carpinus fangiana HOM05D004341 ORTHO05D122477 1.1e-06 57.8 136 28.7
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 1.9e-06 57.0 89 41.6


User provided reference genes

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