Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p059239 Quercus lobata HOM05D002366 ORTHO05D002499 2.6e-50 201.8 108 100.0
QL04p068053 Quercus lobata HOM05D002366 ORTHO05D002499 3.6e-15 85.1 124 48.4
Sabra10G0158200 Salix brachista HOM05D002366 ORTHO05D002499 8.0e-15 84.0 113 46.9
Haze_17054 Corylus avellana HOM05D002366 ORTHO05D002499 3.0e-14 82.0 114 43.9
Cfa001486 Carpinus fangiana HOM05D002366 ORTHO05D002499 3.9e-14 81.6 110 45.5
Sabra10G0158300 Salix brachista HOM05D002366 ORTHO05D002499 3.9e-14 81.6 113 46.0
ClCG09G019910 Citrullus lanatus HOM05D002366 ORTHO05D002499 8.8e-14 80.5 107 45.8
CSS0010618 Camellia sinensis var. sinensis HOM05D002366 ORTHO05D002499 1.1e-13 80.1 111 43.2
TWI38G1308 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 1.1e-13 80.1 113 46.0
MELO3C021643.2 Cucumis melo HOM05D002366 ORTHO05D002499 2.0e-13 79.3 105 44.8
MELO3C021645.2 Cucumis melo HOM05D002366 ORTHO05D002499 2.6e-13 79.0 107 44.9
CANSAT56G2475 Cannabis sativa HOM05D002366 ORTHO05D002499 3.3e-13 78.6 101 43.6
CANSAT56G4267 Cannabis sativa HOM05D002366 ORTHO05D002499 3.3e-13 78.6 101 43.6
CsaV3_5G026540 Cucumis sativus L. HOM05D002366 ORTHO05D002499 4.4e-13 78.2 107 45.8
BcaC02g07395 Brassica carinata HOM05D002366 ORTHO05D002499 5.7e-13 77.8 113 45.1
Sed0023282 Sechium edule HOM05D002366 ORTHO05D002499 1.3e-12 76.6 107 43.9
A04p30410 Brassica napus HOM05D002366 ORTHO05D002499 1.7e-12 76.3 113 46.0
C04p67410 Brassica napus HOM05D002366 ORTHO05D002499 1.7e-12 76.3 113 46.0
Sed0020714 Sechium edule HOM05D002366 ORTHO05D002499 1.7e-12 76.3 103 48.5
CsaV3_5G026570 Cucumis sativus L. HOM05D002366 ORTHO05D002499 2.8e-12 75.5 104 41.3
Thecc.10G043700 Theobroma cacao HOM05D002366 ORTHO05D002499 3.7e-12 75.1 113 40.7
BolC4t28239H Brassica oleracea HOM05D002366 ORTHO05D002499 4.8e-12 74.7 113 45.1
Duzib114G1053 Durio zibethinus HOM05D002366 ORTHO05D002499 4.8e-12 74.7 113 41.6
Potri.010G204700 Populus trichocarpa HOM05D002366 ORTHO05D002499 4.8e-12 74.7 114 44.7
Sed0019419 Sechium edule HOM05D002366 ORTHO05D002499 4.8e-12 74.7 106 43.4
BcaB02g09112 Brassica carinata HOM05D002366 ORTHO05D002499 1.1e-11 73.6 112 41.1
Cpa.g.sc361.1 Carica papaya HOM05D002366 ORTHO05D002499 1.1e-11 73.6 116 42.2
Gohir.A10G217500 Gossypium hirsutum HOM05D002366 ORTHO05D002499 1.1e-11 73.6 114 42.1
Gorai.011G257400 Gossypium raimondii HOM05D002366 ORTHO05D002499 1.1e-11 73.6 114 43.0
MELO3C033579.2 Cucumis melo HOM05D002366 ORTHO05D002499 1.4e-11 73.2 108 39.8
BcaC02g12081 Brassica carinata HOM05D002366 ORTHO05D002499 1.8e-11 72.8 112 41.1
A05p06860 Brassica napus HOM05D002366 ORTHO05D002499 2.4e-11 72.4 112 41.1
BraA05t19651Z Brassica rapa HOM05D002366 ORTHO05D002499 2.4e-11 72.4 112 41.1
Dinv26005 Davidia involucrata HOM05D002366 ORTHO05D002499 2.4e-11 72.4 111 45.9
CsaV3_5G026550 Cucumis sativus L. HOM05D002366 ORTHO05D002499 3.1e-11 72.0 106 39.6
Gohir.D10G226600 Gossypium hirsutum HOM05D002366 ORTHO05D002499 3.1e-11 72.0 114 42.1
Prupe.2G233700 Prunus persica HOM05D002366 ORTHO05D002499 3.1e-11 72.0 108 42.6
Migut.F01504 Erythranthe guttata HOM05D002366 ORTHO05D002499 5.3e-11 71.2 112 38.4
C04p08120 Brassica napus HOM05D002366 ORTHO05D002499 7.0e-11 70.9 112 40.2
BolC4t22422H Brassica oleracea HOM05D002366 ORTHO05D002499 7.0e-11 70.9 112 40.2
Gohir.D10G226300 Gossypium hirsutum HOM05D002366 ORTHO05D002499 9.1e-11 70.5 114 41.2
Prupe.2G234000 Prunus persica HOM05D002366 ORTHO05D002499 9.1e-11 70.5 107 38.3
arahy.Tifrunner.gnm1.ann1.BG6DLE Arachis hypogaea HOM05D002366 ORTHO05D002499 1.2e-10 70.1 112 41.1
arahy.Tifrunner.gnm1.ann1.CW7JQJ Arachis hypogaea HOM05D002366 ORTHO05D002499 1.2e-10 70.1 112 41.1
CANSAT56G3459 Cannabis sativa HOM05D002366 ORTHO05D002499 1.2e-10 70.1 111 36.9
ClCG09G019900 Citrullus lanatus HOM05D002366 ORTHO05D002499 1.2e-10 70.1 107 40.2
Dinv31454 Davidia involucrata HOM05D002366 ORTHO05D002499 1.2e-10 70.1 110 45.5
Lj1g0007186 Lotus japonicus HOM05D002366 ORTHO05D002499 1.2e-10 70.1 113 42.5
MD01G1126800 Malus domestica HOM05D002366 ORTHO05D002499 1.2e-10 70.1 109 41.3
Sp4g21820 Schrenkiella parvula HOM05D002366 ORTHO05D002499 1.2e-10 70.1 112 39.3
Sed0022735 Sechium edule HOM05D002366 ORTHO05D002499 1.2e-10 70.1 102 43.1
BcaC02g07399 Brassica carinata HOM05D002366 ORTHO05D002499 1.6e-10 69.7 114 42.1
CANSAT56G3432 Cannabis sativa HOM05D002366 ORTHO05D002499 2.6e-10 68.9 106 36.8
CANSAT56G4227 Cannabis sativa HOM05D002366 ORTHO05D002499 3.5e-10 68.6 111 36.0
FAN03G1080 Fragaria x ananassa HOM05D002366 ORTHO05D002499 3.5e-10 68.6 107 36.4
FvH4_7g22200 Fragaria vesca HOM05D002366 ORTHO05D002499 4.5e-10 68.2 107 36.4
FAN06G1701 Fragaria x ananassa HOM05D002366 ORTHO05D002499 4.5e-10 68.2 107 36.4
AT2G39530 Arabidopsis thaliana HOM05D002366 ORTHO05D002499 5.9e-10 67.8 112 40.2
CANSAT56G1523 Cannabis sativa HOM05D002366 ORTHO05D002499 5.9e-10 67.8 106 36.8
Lj1g0005309 Lotus japonicus HOM05D002366 ORTHO05D002499 5.9e-10 67.8 112 39.3
GSVIVG01016540001 Vitis vinifera HOM05D002366 ORTHO05D002499 5.9e-10 67.8 108 41.7
Haze_17057 Corylus avellana HOM05D002366 ORTHO05D002499 7.7e-10 67.4 113 38.9
TPR.G18296 Trifolium pratense HOM05D002366 ORTHO05D002499 7.7e-10 67.4 74 47.3
Sed0005662 Sechium edule HOM05D002366 ORTHO05D002499 1.0e-09 67.0 109 39.4
CARHR134410 Cardamine hirsuta HOM05D002366 ORTHO05D002499 1.3e-09 66.6 113 39.8
Ca_07285_v3 Cicer arietinum L. HOM05D002366 ORTHO05D002499 1.7e-09 66.2 113 41.6
Cc02_g07950 Coffea canephora HOM05D002366 ORTHO05D002499 1.7e-09 66.2 111 42.3
Sed0021883 Sechium edule HOM05D002366 ORTHO05D002499 1.7e-09 66.2 74 50.0
BcaB06g29095 Brassica carinata HOM05D002366 ORTHO05D002499 2.2e-09 65.9 113 39.8
RcHm_v2.0_Chr1g0366551 Rosa chinensis HOM05D002366 ORTHO05D002499 2.2e-09 65.9 107 35.5
AT2G39518 Arabidopsis thaliana HOM05D002366 ORTHO05D002499 2.9e-09 65.5 113 37.2
Thhalv10017305m.g Eutrema salsugineum HOM05D002366 ORTHO05D002499 2.9e-09 65.5 112 38.4
Carub.0004s2161 Capsella rubella HOM05D002366 ORTHO05D002499 3.8e-09 65.1 112 38.4
AL4G36940 Arabidopsis lyrata HOM05D002366 ORTHO05D002499 5.0e-09 64.7 113 38.1
AL4G36950 Arabidopsis lyrata HOM05D002366 ORTHO05D002499 6.5e-09 64.3 112 38.4
Thhalv10017310m.g Eutrema salsugineum HOM05D002366 ORTHO05D002499 6.5e-09 64.3 112 36.6
Prupe.2G233900 Prunus persica HOM05D002366 ORTHO05D002499 6.5e-09 64.3 113 38.1
DCAR_019173 Daucus carota HOM05D002366 ORTHO05D002499 8.5e-09 63.9 111 37.8
Medtr7g024750 Medicago truncatula HOM05D002366 ORTHO05D002499 8.5e-09 63.9 113 41.6
C04p67400 Brassica napus HOM05D002366 ORTHO05D002499 1.1e-08 63.5 115 40.0
CsaV3_5G026560 Cucumis sativus L. HOM05D002366 ORTHO05D002499 1.1e-08 63.5 107 36.4
Migut.F01502 Erythranthe guttata HOM05D002366 ORTHO05D002499 1.1e-08 63.5 112 37.5
FAN01G2158 Fragaria x ananassa HOM05D002366 ORTHO05D002499 1.1e-08 63.5 107 34.6
Oeu048250.1 Olea europaea HOM05D002366 ORTHO05D002499 1.5e-08 63.2 111 37.8
BolC4t28238H Brassica oleracea HOM05D002366 ORTHO05D002499 1.9e-08 62.8 112 36.6
COL.COLO4_15014 Corchorus olitorius HOM05D002366 ORTHO05D002499 1.9e-08 62.8 81 42.0
Sc06g0002620 Simmondsia chinensis HOM05D002366 ORTHO05D002499 3.2e-08 62.0 112 39.3
THA.LOC104810173 Tarenaya hassleriana HOM05D002366 ORTHO05D002499 3.2e-08 62.0 110 38.2
TPR.G15520 Trifolium pratense HOM05D002366 ORTHO05D002499 3.2e-08 62.0 112 38.4
A04p30420 Brassica napus HOM05D002366 ORTHO05D002499 4.2e-08 61.6 112 35.7
BraA04t18467Z Brassica rapa HOM05D002366 ORTHO05D002499 4.2e-08 61.6 112 35.7
Migut.F01505 Erythranthe guttata HOM05D002366 ORTHO05D002499 4.2e-08 61.6 111 39.6
Eucgr.G02924 Eucalyptus grandis HOM05D002366 ORTHO05D002499 5.5e-08 61.2 112 35.7
Glyma.18G289800 Glycine max HOM05D002366 ORTHO05D002499 5.5e-08 61.2 112 36.6
Lalb_Chr10g0091701 Lupinus albus HOM05D002366 ORTHO05D002499 5.5e-08 61.2 113 37.2
Lalb_Chr17g0336171 Lupinus albus HOM05D002366 ORTHO05D002499 5.5e-08 61.2 113 41.6
Sp4g21830 Schrenkiella parvula HOM05D002366 ORTHO05D002499 5.5e-08 61.2 113 38.9
BcaB06g29094 Brassica carinata HOM05D002366 ORTHO05D002499 7.2e-08 60.8 112 35.7
Psat3g179160 Pisum sativum HOM05D002366 ORTHO05D002499 7.2e-08 60.8 113 39.8
TPR.G15505 Trifolium pratense HOM05D002366 ORTHO05D002499 7.2e-08 60.8 113 38.9
Peaxi162Scf00760g00219 Petunia axillaris HOM05D002366 ORTHO05D002499 9.4e-08 60.5 112 39.3
SalBow6G6566 Salvia bowleyana HOM05D002366 ORTHO05D002499 9.4e-08 60.5 110 39.1
TPR.G18306 Trifolium pratense HOM05D002366 ORTHO05D002499 9.4e-08 60.5 113 40.7
GSVIVG01016541001 Vitis vinifera HOM05D002366 ORTHO05D002499 9.4e-08 60.5 114 34.2
Carub.0004s2160 Capsella rubella HOM05D002366 ORTHO05D002499 1.2e-07 60.1 114 35.1
Nitab4.5_0000687g0190 Nicotiana tabacum HOM05D002366 ORTHO05D002499 1.6e-07 59.7 110 37.3
FAN01G1305 Fragaria x ananassa HOM05D002366 ORTHO05D002499 2.1e-07 59.3 107 33.6
Medtr7g024730 Medicago truncatula HOM05D002366 ORTHO05D002499 2.1e-07 59.3 113 38.1
Ciclev10033896m.g Citrus clementina HOM05D002366 ORTHO05D002499 2.7e-07 58.9 75 42.7
SalBow6G6394 Salvia bowleyana HOM05D002366 ORTHO05D002499 2.7e-07 58.9 110 38.2
Glyma.02G092500 Glycine max HOM05D002366 ORTHO05D002499 3.6e-07 58.5 112 36.6
Dinv26006 Davidia involucrata HOM05D002366 ORTHO05D002499 4.7e-07 58.2 111 38.7
FAN03G0063 Fragaria x ananassa HOM05D002366 ORTHO05D002499 4.7e-07 58.2 108 32.4
Glyma.18G289900 Glycine max HOM05D002366 ORTHO05D002499 4.7e-07 58.2 112 35.7
Glyma.18G290100 Glycine max HOM05D002366 ORTHO05D002499 4.7e-07 58.2 112 35.7
Phvul.008G012300 Phaseolus vulgaris HOM05D002366 ORTHO05D002499 4.7e-07 58.2 112 36.6
Cc02_g07930 Coffea canephora HOM05D002366 ORTHO05D002499 6.1e-07 57.8 111 36.0
Aa31LG5G20080 Aethionema arabicum HOM05D002366 ORTHO05D002499 8.0e-07 57.4 113 35.4
CAN.G786.13 Capsicum annuum HOM05D002366 ORTHO05D002499 8.0e-07 57.4 112 37.5
SalBow3G2180 Salvia bowleyana HOM05D002366 ORTHO05D002499 8.0e-07 57.4 110 36.4
DCAR_027633 Daucus carota HOM05D002366 ORTHO05D002499 1.0e-06 57.0 111 32.4
RcHm_v2.0_Chr1g0366591 Rosa chinensis HOM05D002366 ORTHO05D002499 1.4e-06 56.6 108 35.2
FvH4_7g22201 Fragaria vesca HOM05D002366 ORTHO05D002499 1.8e-06 56.2 107 32.7
FAN06G2917 Fragaria x ananassa HOM05D002366 ORTHO05D002499 1.8e-06 56.2 107 32.7
Glyma.02G092600 Glycine max HOM05D002366 ORTHO05D002499 2.3e-06 55.8 112 36.6
Peaxi162Scf00760g00218 Petunia axillaris HOM05D002366 ORTHO05D002499 4.0e-06 55.1 112 36.6
Oeu019149.1 Olea europaea HOM05D002366 ORTHO05D002499 8.8e-06 53.9 116 33.6
VMungo1383G2089 Vigna mungo HOM05D002366 ORTHO05D002499 8.8e-06 53.9 112 33.9


User provided reference genes

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