Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p052215 Quercus lobata HOM05D000245 ORTHO05D021158 2.9e-51 204.9 103 100.0
QL12p027792 Quercus lobata HOM05D000245 ORTHO05D000020 6.4e-46 187.2 103 92.2
CiPaw.07G112200 Carya illinoinensis HOM05D000245 ORTHO05D000020 2.7e-20 102.1 96 61.5
FAN15G3494 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.3e-17 93.2 91 58.2
Haze_04979 Corylus avellana HOM05D000245 ORTHO05D000020 2.8e-17 92.0 98 58.2
Cfa005868 Carpinus fangiana HOM05D000245 ORTHO05D000020 3.6e-17 91.7 98 59.2
CANSAT25G2954 Cannabis sativa HOM05D000245 ORTHO05D000020 4.8e-17 91.3 112 50.0
FAN27G1186 Fragaria x ananassa HOM05D000245 ORTHO05D000020 8.1e-17 90.5 91 57.1
FAN24G2143 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.4e-16 89.7 92 55.4
AUR62043487 Chenopodium quinoa HOM05D000245 ORTHO05D000020 1.8e-16 89.4 74 62.2
FAN20G2087 Fragaria x ananassa HOM05D000245 ORTHO05D000020 3.1e-16 88.6 91 54.9
COL.COLO4_23306 Corchorus olitorius HOM05D000245 ORTHO05D000020 4.0e-16 88.2 103 52.4
Duzib138G0004 Durio zibethinus HOM05D000245 ORTHO05D000020 4.0e-16 88.2 100 52.0
AUR62008711 Chenopodium quinoa HOM05D000245 ORTHO05D000020 5.3e-16 87.8 74 60.8
Duzib133G0934 Durio zibethinus HOM05D000245 ORTHO05D000020 9.0e-16 87.0 103 52.4
ClCG10G011120 Citrullus lanatus HOM05D000245 ORTHO05D000020 1.5e-15 86.3 87 55.2
Glyma.10G016500 Glycine max HOM05D000245 ORTHO05D000020 1.5e-15 86.3 86 54.7
Ah.15g093020 Amaranthus hybridus HOM05D000245 ORTHO05D000020 2.6e-15 85.5 92 50.0
FvH4_2g26080 Fragaria vesca HOM05D000245 ORTHO05D000020 5.8e-15 84.3 69 62.3
Lalb_Chr06g0166561 Lupinus albus HOM05D000245 ORTHO05D000020 7.6e-15 84.0 92 54.3
Sed0016897 Sechium edule HOM05D000245 ORTHO05D000020 7.6e-15 84.0 75 58.7
CsaV3_4G000990 Cucumis sativus L. HOM05D000245 ORTHO05D000020 9.9e-15 83.6 76 57.9
MD11G1306500 Malus domestica HOM05D000245 ORTHO05D000020 1.3e-14 83.2 108 48.1
Gorai.004G142800 Gossypium raimondii HOM05D000245 ORTHO05D000020 1.7e-14 82.8 97 48.5
RcHm_v2.0_Chr6g0294441 Rosa chinensis HOM05D000245 ORTHO05D000020 1.7e-14 82.8 91 51.6
TWI14G1013 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 2.2e-14 82.4 91 49.5
Gohir.A08G118100 Gossypium hirsutum HOM05D000245 ORTHO05D000020 3.8e-14 81.6 105 45.7
Gohir.D08G139100 Gossypium hirsutum HOM05D000245 ORTHO05D000020 3.8e-14 81.6 97 47.4
Manes.01G222600 Manihot esculenta HOM05D000245 ORTHO05D000020 3.8e-14 81.6 89 51.7
Eucgr.H01085 Eucalyptus grandis HOM05D000245 ORTHO05D000020 4.9e-14 81.3 98 51.0
MELO3C017940.2 Cucumis melo HOM05D000245 ORTHO05D000020 6.4e-14 80.9 82 53.7
Phvul.007G217800 Phaseolus vulgaris HOM05D000245 ORTHO05D000020 6.4e-14 80.9 94 53.2
AUR62025525 Chenopodium quinoa HOM05D000245 ORTHO05D000020 8.4e-14 80.5 74 59.5
VMungo0720G1171 Vigna mungo HOM05D000245 ORTHO05D000020 1.1e-13 80.1 94 52.1
Sabra02G0157400 Salix brachista HOM05D000245 ORTHO05D000020 1.4e-13 79.7 82 51.2
TPR.G33964 Trifolium pratense HOM05D000245 ORTHO05D000020 2.4e-13 79.0 92 48.9
Gohir.A08G041600 Gossypium hirsutum HOM05D000245 ORTHO05D000020 5.4e-13 77.8 102 40.2
Gorai.004G051600 Gossypium raimondii HOM05D000245 ORTHO05D000020 5.4e-13 77.8 102 39.2
Hund05450 Selenicereus undatus HOM05D000245 ORTHO05D000020 5.4e-13 77.8 90 50.0
Duzib138G0617 Durio zibethinus HOM05D000245 ORTHO05D000020 7.1e-13 77.4 88 51.1
Glyma.02G016100 Glycine max HOM05D000245 ORTHO05D000020 9.3e-13 77.0 68 60.3
Prupe.8G264900 Prunus persica HOM05D000245 ORTHO05D000020 9.3e-13 77.0 104 52.9
Cpa.g.sc151.30 Carica papaya HOM05D000245 ORTHO05D000020 1.6e-12 76.3 59 62.7
Lj1C22T12 Lonicera japonica HOM05D000245 ORTHO05D000020 1.6e-12 76.3 76 53.9
Lj5g0022230 Lotus japonicus HOM05D000245 ORTHO05D000020 1.6e-12 76.3 67 62.7
Potri.002G201600 Populus trichocarpa HOM05D000245 ORTHO05D000020 1.6e-12 76.3 76 56.6
PGR119G0257 Punica granatum HOM05D000245 ORTHO05D000020 1.6e-12 76.3 71 54.9
Gohir.D08G051700 Gossypium hirsutum HOM05D000245 ORTHO05D000020 2.1e-12 75.9 102 39.2
Ah.03g147330 Amaranthus hybridus HOM05D000245 ORTHO05D021158 2.7e-12 75.5 53 62.3
Ca_10317_v3 Cicer arietinum L. HOM05D000245 ORTHO05D021158 2.7e-12 75.5 54 66.7
Psat6g163880 Pisum sativum HOM05D000245 ORTHO05D000020 2.7e-12 75.5 54 66.7
Potri.014G126100 Populus trichocarpa HOM05D000245 ORTHO05D000020 2.7e-12 75.5 115 46.1
Thecc.01G305800 Theobroma cacao HOM05D000245 ORTHO05D000020 3.5e-12 75.1 92 47.8
Medtr1g087920 Medicago truncatula HOM05D000245 ORTHO05D000020 4.6e-12 74.7 92 51.1
Thecc.01G305400 Theobroma cacao HOM05D000245 ORTHO05D000020 7.8e-12 73.9 95 43.2
Rhsim01G0287500 Rhododendron simsii HOM05D000245 ORTHO05D000020 1.0e-11 73.6 60 65.0
Dinv10040 Davidia involucrata HOM05D000245 ORTHO05D000020 1.7e-11 72.8 94 40.4
Dinv19668 Davidia involucrata HOM05D000245 ORTHO05D000020 1.7e-11 72.8 94 40.4
Dinv33076 Davidia involucrata HOM05D000245 ORTHO05D000020 1.7e-11 72.8 57 64.9
Thecc.01G305200 Theobroma cacao HOM05D000245 ORTHO05D000020 1.7e-11 72.8 95 43.2
CSS0031448 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 3.0e-11 72.0 87 48.3
Sc17g0003030 Simmondsia chinensis HOM05D000245 ORTHO05D000020 3.0e-11 72.0 79 50.6
COL.COLO4_23308 Corchorus olitorius HOM05D000245 ORTHO05D000020 3.9e-11 71.6 72 52.8
vmacro15137 Vaccinium macrocarpon HOM05D000245 ORTHO05D000020 3.9e-11 71.6 79 53.2
Actinidia21434 Actinidia chinensis HOM05D000245 ORTHO05D000020 5.1e-11 71.2 100 48.0
CAN.G862.63 Capsicum annuum HOM05D000245 ORTHO05D000020 5.1e-11 71.2 91 50.5
DCAR_005784 Daucus carota HOM05D000245 ORTHO05D000020 5.1e-11 71.2 54 57.4
Peaxi162Scf00001g00352 Petunia axillaris HOM05D000245 ORTHO05D000020 5.1e-11 71.2 57 63.2
Ah.02g117140 Amaranthus hybridus HOM05D000245 ORTHO05D021158 6.6e-11 70.9 55 58.2
Oeu008345.1 Olea europaea HOM05D000245 ORTHO05D000020 6.6e-11 70.9 94 45.7
THA.LOC104804723 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 6.6e-11 70.9 67 50.7
THA.LOC104814747 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 6.6e-11 70.9 67 50.7
THA.LOC104827676 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 6.6e-11 70.9 67 50.7
THA.LOC104817479 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 1.1e-10 70.1 58 56.9
Ah.08g213540 Amaranthus hybridus HOM05D001493 ORTHO05D000020 1.5e-10 69.7 65 53.8
CiPaw.08G093000 Carya illinoinensis HOM05D000245 ORTHO05D000020 1.5e-10 69.7 88 47.7
GSVIVG01028050001 Vitis vinifera HOM05D000245 ORTHO05D000020 1.5e-10 69.7 93 47.3
Sopen09g030200 Solanum pennellii HOM05D000245 ORTHO05D000020 1.9e-10 69.3 62 64.5
THA.LOC104802181 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 1.9e-10 69.3 59 54.2
EL10Ac7g17571 Beta vulgaris HOM05D000245 ORTHO05D000020 2.5e-10 68.9 94 42.6
Oeu008343.1 Olea europaea HOM05D000245 ORTHO05D000020 2.5e-10 68.9 94 47.9
Ca_10316_v3 Cicer arietinum L. HOM05D000245 ORTHO05D000020 4.3e-10 68.2 51 62.7
ECA236G1351 Erigeron canadensis HOM05D000245 ORTHO05D000020 4.3e-10 68.2 62 50.0
HanXRQChr06g0167701 Helianthus annuus HOM05D000245 ORTHO05D000020 5.6e-10 67.8 71 52.1
Nitab4.5_0000803g0030 Nicotiana tabacum HOM05D000245 ORTHO05D000020 7.3e-10 67.4 59 55.9
Actinidia25820 Actinidia chinensis HOM05D000245 ORTHO05D000020 9.6e-10 67.0 84 51.2
Cc01_g21090 Coffea canephora HOM05D000245 ORTHO05D000020 1.3e-09 66.6 106 38.7
Solyc09g075420.3 Solanum lycopersicum HOM05D000245 ORTHO05D000020 1.3e-09 66.6 73 56.2
PGSC0003DMG400031795 Solanum tuberosum HOM05D000245 ORTHO05D000020 1.3e-09 66.6 79 51.9
Atru.chr5.1089 Acer truncatum HOM05D000245 ORTHO05D000020 1.6e-09 66.2 98 41.8
MSTRG.21648 Avicennia marina HOM05D000245 ORTHO05D000020 1.6e-09 66.2 72 54.2
Dinv02023 Davidia involucrata HOM05D000245 ORTHO05D021158 1.6e-09 66.2 80 47.5
Nitab4.5_0000116g0330 Nicotiana tabacum HOM05D000245 ORTHO05D000020 1.6e-09 66.2 58 56.9
Actinidia21025 Actinidia chinensis HOM05D000245 ORTHO05D000020 2.1e-09 65.9 99 42.4
MSTRG.21649 Avicennia marina HOM05D000245 ORTHO05D000020 2.1e-09 65.9 60 58.3
PSO407G0293 Papaver somniferum HOM05D000245 ORTHO05D000020 2.1e-09 65.9 96 44.8
TAR633G0380 Trochodendron aralioides HOM05D000245 ORTHO05D000020 2.8e-09 65.5 52 59.6
Ciclev10021059m.g Citrus clementina HOM05D000245 ORTHO05D000020 3.6e-09 65.1 58 56.9
Aa31LG1G28850 Aethionema arabicum HOM05D000245 ORTHO05D000020 6.2e-09 64.3 55 58.2
MSTRG.18135 Avicennia marina HOM05D000245 ORTHO05D000020 6.2e-09 64.3 61 54.1
Lalb_Chr21g0309321 Lupinus albus HOM05D000245 ORTHO05D000020 8.1e-09 63.9 70 48.6
HanXRQChr04g0114741 Helianthus annuus HOM05D000245 ORTHO05D000020 1.1e-08 63.5 70 51.4
BcaB06g29442 Brassica carinata HOM05D000245 ORTHO05D000020 1.4e-08 63.2 54 55.6
PSO170G1965 Papaver somniferum HOM05D000245 ORTHO05D000020 1.4e-08 63.2 101 43.6
Hma1.2p1_0494F.1_g165440 Hydrangea macrophylla HOM05D000245 ORTHO05D000020 2.4e-08 62.4 50 64.0
CSS0035247 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 4.0e-08 61.6 54 55.6
Migut.D00130 Erythranthe guttata HOM05D000245 ORTHO05D000020 9.0e-08 60.5 68 48.5
TAR362G0701 Trochodendron aralioides HOM05D000245 ORTHO05D000020 1.2e-07 60.1 84 44.0
Actinidia20003 Actinidia chinensis HOM05D000245 ORTHO05D021158 1.5e-07 59.7 86 44.2
Lsat_1_v5_gn_8_164520 Lactuca sativa HOM05D000245 ORTHO05D000020 1.5e-07 59.7 71 46.5
unitig_60.g25583 Utricularia gibba HOM05D000245 ORTHO05D000020 2.0e-07 59.3 64 51.6
BraSC79t46687Z Brassica rapa HOM05D000245 ORTHO05D000020 2.6e-07 58.9 56 51.8
BcaC02g06980 Brassica carinata HOM05D000245 ORTHO05D000020 3.4e-07 58.5 56 50.0
C04p72870 Brassica napus HOM05D000245 ORTHO05D000020 3.4e-07 58.5 56 50.0
DCAR_018316 Daucus carota HOM05D000245 ORTHO05D000020 3.4e-07 58.5 82 47.6
Lj1g0007199 Lotus japonicus HOM05D000245 ORTHO05D000020 3.4e-07 58.5 68 45.6
MBI18_g21797_MAGBIO Magnolia biondii HOM05D000245 ORTHO05D000020 4.5e-07 58.2 57 56.1
A04p34970 Brassica napus HOM05D000245 ORTHO05D000020 9.9e-07 57.0 56 50.0
BolC4t28768H Brassica oleracea HOM05D000245 ORTHO05D000020 9.9e-07 57.0 56 50.0
SGA_v2.0_scaffold2G01381 Striga asiatica HOM05D000245 ORTHO05D000020 1.3e-06 56.6 57 43.9
Nn4g25739 Nelumbo nucifera HOM05D000245 ORTHO05D000020 1.7e-06 56.2 101 35.6
unitig_0.g405 Utricularia gibba HOM05D000245 ORTHO05D000020 2.2e-06 55.8 52 51.9
ATR0693G281 Amborella trichopoda HOM05D000245 ORTHO05D000020 2.9e-06 55.5 61 44.3
Aqoxy2G02880 Aquilegia oxysepala HOM05D000245 ORTHO05D000020 2.9e-06 55.5 59 47.5
arahy.Tifrunner.gnm1.ann1.DRB5KP Arachis hypogaea HOM05D000245 ORTHO05D000020 4.9e-06 54.7 62 45.2
CARHR142930 Cardamine hirsuta HOM05D000245 ORTHO05D000020 6.4e-06 54.3 52 48.1
ATR0099G024 Amborella trichopoda HOM05D000245 ORTHO05D000020 8.4e-06 53.9 57 49.1


User provided reference genes

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