Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 3.8e-219 764.6 404 100.0
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 4.9e-142 508.4 382 73.8
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 2.3e-131 473.0 404 67.3
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 2.0e-127 459.9 411 65.0
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 2.5e-122 443.0 406 61.8
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 7.3e-122 441.4 406 61.3
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 8.1e-121 438.0 405 62.5
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.2e-119 434.1 406 61.6
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 9.9e-119 431.0 409 60.4
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 1.3e-118 430.6 410 60.5
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 1.7e-118 430.3 433 58.4
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 8.7e-115 417.9 380 61.6
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 6.2e-113 411.8 345 66.4
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 1.1e-112 411.0 414 57.2
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 3.4e-111 406.0 407 56.8
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 5.8e-111 405.2 418 55.5
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 3.8e-110 402.5 466 54.5
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.9e-110 402.1 466 54.3
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.1e-109 401.0 407 56.0
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 1.6e-108 397.1 381 58.0
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 1.6e-108 397.1 407 58.0
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 8.7e-107 391.3 459 53.8
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 8.7e-107 391.3 465 52.9
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 3.7e-105 386.0 391 58.1
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.0e-104 382.5 459 53.6
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 5.3e-104 382.1 403 56.8
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 5.3e-104 382.1 413 56.2
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 4.5e-103 379.0 410 55.9
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.3e-102 377.5 459 53.4
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 2.9e-102 376.3 372 56.7
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 4.2e-101 372.5 416 55.0
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 1.5e-98 364.0 412 51.9
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 9.7e-98 361.3 405 54.3
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 6.3e-97 358.6 417 51.1
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 4.1e-96 355.9 335 59.4
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 7.6e-95 351.7 410 56.1
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 5.5e-93 345.5 417 51.1
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 2.1e-92 343.6 404 52.2
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 3.0e-91 339.7 383 51.2
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 9.7e-90 334.7 416 50.5
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 9.7e-90 334.7 425 49.2
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 8.2e-89 331.6 315 59.4
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 4.1e-88 329.3 440 45.7
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 1.2e-87 327.8 421 49.6
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 4.2e-85 319.3 404 49.3
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 2.1e-84 317.0 453 44.4
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 4.7e-84 315.8 382 51.8
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 5.1e-83 312.4 285 61.4
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 5.7e-82 308.9 436 45.6
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 7.4e-82 308.5 408 47.8
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 1.7e-81 307.4 426 47.4
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 4.8e-81 305.8 457 45.3
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 6.3e-81 305.4 473 44.6
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 1.4e-80 304.3 459 45.1
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 1.8e-80 303.9 413 47.2
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 1.8e-80 303.9 426 46.0
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 4.1e-80 302.8 425 48.0
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 1.5e-79 300.8 454 43.2
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 7.7e-79 298.5 454 43.0
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 2.2e-78 297.0 418 45.2
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 5.0e-78 295.8 404 46.0
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 3.6e-76 289.7 343 54.2
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 8.0e-76 288.5 255 64.3
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 2.3e-75 287.0 392 49.2
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 6.7e-75 285.4 401 47.4
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.1e-74 284.6 419 45.8
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.5e-74 284.3 337 51.6
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 2.6e-74 283.5 398 45.5
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 2.2e-73 280.4 414 46.6
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 1.4e-72 277.7 459 42.9
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 1.4e-72 277.7 253 61.3
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 7.0e-72 275.4 376 46.5
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 1.2e-71 274.6 411 45.5
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 1.2e-71 274.6 375 46.4
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 1.6e-71 274.2 415 42.9
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 1.3e-70 271.2 270 57.8
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.2e-70 270.4 262 58.4
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.7e-68 262.7 212 71.7
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 8.0e-68 261.9 280 57.1
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 3.0e-67 260.0 370 43.5
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 8.8e-67 258.5 463 38.7
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 8.8e-67 258.5 381 47.0
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 2.0e-66 257.3 460 38.7
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 1.7e-65 254.2 393 42.5
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 4.8e-65 252.7 428 40.0
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 1.4e-64 251.1 260 53.5
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 3.5e-63 246.5 403 42.9
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 7.7e-63 245.4 435 41.6
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 1.5e-61 241.1 442 38.5
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 3.2e-61 240.0 419 41.3
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 2.1e-60 237.3 240 61.2
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 2.1e-60 237.3 398 40.5
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 2.1e-60 237.3 349 43.8
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 4.7e-60 236.1 419 39.9
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 6.1e-60 235.7 462 41.6
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 1.8e-59 234.2 435 37.2
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 1.5e-58 231.1 411 38.9
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 5.7e-58 229.2 436 39.7
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 5.7e-58 229.2 276 54.7
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 4.1e-56 223.0 419 39.1
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.7e-55 220.3 286 49.7
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 7.7e-55 218.8 264 54.9
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 1.7e-54 217.6 444 38.5
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 8.3e-49 198.7 461 34.9
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 7.0e-48 195.7 322 40.4
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 3.5e-47 193.4 195 57.9
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 5.0e-46 189.5 429 35.9
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 2.1e-44 184.1 115 84.3
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 9.8e-42 175.3 253 45.8
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.3e-41 174.9 323 35.3
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 9.5e-37 158.7 307 39.1
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 2.1e-36 157.5 142 66.2
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 4.9e-33 146.4 307 37.8
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 7.3e-29 132.5 409 32.8
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 9.5e-29 132.1 323 34.1
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 2.8e-28 130.6 259 39.0
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.4e-27 128.3 135 54.8
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.2e-27 126.3 256 36.3
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 4.6e-23 113.2 134 51.5
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 3.0e-22 110.5 91 61.5
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 4.3e-21 106.7 105 63.8
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.2e-20 105.1 103 58.3
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 2.1e-20 104.4 80 76.2
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.0e-18 97.8 74 64.9
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 8.4e-17 92.4 68 63.2
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.9e-16 91.3 74 70.3
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.2e-15 88.6 71 64.8
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 2.1e-15 87.8 119 36.1
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 6.0e-15 86.3 81 64.2
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 1.5e-13 81.6 147 40.1
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 4.3e-13 80.1 74 55.4
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 6.2e-12 76.3 135 40.7
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 9.0e-11 72.4 136 41.2
Eucgr.D02395 Eucalyptus grandis HOM05D005648 ORTHO05D029324 1.2e-07 62.0 109 41.3
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 6.0e-07 59.7 73 49.3
Hund16647 Selenicereus undatus HOM05D005648 ORTHO05D007357 6.0e-07 59.7 124 38.7
Eucgr.D02408 Eucalyptus grandis HOM05D005648 ORTHO05D029324 1.7e-06 58.2 90 41.1
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 6.6e-06 56.2 63 55.6


User provided reference genes

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