Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 1.7e-65 252.7 138 100.0
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.6e-44 183.0 115 84.3
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 9.4e-37 157.1 115 72.2
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 6.1e-36 154.5 115 70.4
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 1.3e-33 146.7 115 68.7
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 2.2e-33 146.0 114 66.7
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 4.1e-32 141.7 113 68.1
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 4.1e-32 141.7 115 67.0
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 7.0e-32 141.0 125 63.2
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 1.6e-31 139.8 115 62.6
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 2.0e-31 139.4 113 65.5
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 2.7e-31 139.0 113 62.8
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 3.5e-31 138.7 114 64.9
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 5.9e-31 137.9 115 61.7
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 5.9e-31 137.9 115 63.5
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 1.0e-30 137.1 115 63.5
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.3e-30 136.7 115 64.3
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 1.3e-30 136.7 115 63.5
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 2.3e-30 136.0 115 62.6
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 3.8e-30 135.2 115 60.9
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 6.6e-30 134.4 115 63.5
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 1.1e-29 133.7 115 63.5
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.1e-29 133.7 115 62.6
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.9e-29 132.9 122 57.4
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.5e-29 132.5 117 58.1
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 3.3e-29 132.1 115 61.7
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 3.3e-29 132.1 111 64.0
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 4.2e-29 131.7 127 59.1
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 7.2e-29 131.0 138 55.1
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.2e-28 130.2 115 62.6
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.6e-28 129.8 121 57.9
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 2.1e-28 129.4 111 61.3
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 2.8e-28 129.0 115 60.0
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 6.1e-28 127.9 115 61.7
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 8.0e-28 127.5 110 63.6
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 2.3e-27 125.9 115 62.6
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 4.0e-27 125.2 102 65.7
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 6.8e-27 124.4 113 57.5
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 8.9e-27 124.0 113 57.5
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 1.2e-26 123.6 116 57.8
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 3.4e-26 122.1 113 56.6
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 2.2e-25 119.4 113 53.1
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 4.9e-25 118.2 115 53.9
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.3e-25 117.9 114 57.0
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 1.4e-24 116.7 106 60.4
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.4e-24 116.7 115 54.8
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.4e-24 116.7 115 54.8
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 1.8e-24 116.3 110 60.9
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 1.8e-24 116.3 110 60.9
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 3.2e-24 115.5 113 51.3
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 3.2e-24 115.5 110 58.2
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 4.1e-24 115.2 114 56.1
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 4.1e-24 115.2 107 58.9
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 1.2e-23 113.6 115 50.4
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 1.6e-23 113.2 107 58.9
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 1.6e-23 113.2 107 59.8
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 3.5e-23 112.1 86 77.9
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 3.5e-23 112.1 145 46.9
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 4.6e-23 111.7 115 49.6
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 4.6e-23 111.7 107 58.9
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 5.9e-23 111.3 106 56.6
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 5.9e-23 111.3 106 57.5
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 7.8e-23 110.9 111 54.1
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 7.8e-23 110.9 115 54.8
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 7.8e-23 110.9 107 58.9
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 7.8e-23 110.9 100 59.0
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 1.3e-22 110.2 112 56.2
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 1.3e-22 110.2 111 59.5
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 1.7e-22 109.8 106 56.6
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 8.6e-22 107.5 121 47.9
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.5e-21 106.7 110 52.7
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 1.5e-21 106.7 114 50.9
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 1.9e-21 106.3 113 54.9
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 3.3e-21 105.5 115 51.3
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 5.6e-21 104.8 115 52.2
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 1.2e-20 103.6 114 50.9
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 1.2e-20 103.6 108 53.7
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 2.1e-20 102.8 112 44.6
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 2.8e-20 102.4 113 54.9
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 2.8e-20 102.4 115 51.3
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 2.8e-20 102.4 115 50.4
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 2.8e-20 102.4 136 44.1
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 8.0e-20 100.9 111 52.3
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 8.0e-20 100.9 115 47.0
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 1.8e-19 99.8 115 50.4
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 8.9e-19 97.4 106 49.1
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 8.9e-19 97.4 111 50.5
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 1.2e-18 97.1 125 44.8
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 2.6e-18 95.9 112 50.9
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 4.4e-18 95.1 114 49.1
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 1.7e-17 93.2 83 63.9
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 2.2e-17 92.8 112 50.0
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 2.2e-17 92.8 112 50.0
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 1.1e-16 90.5 109 51.4
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 2.4e-16 89.4 163 36.8
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 3.2e-16 89.0 77 57.1
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 4.1e-16 88.6 131 40.5
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.2e-15 87.0 114 45.6
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 2.7e-15 85.9 77 54.5
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 6.0e-15 84.7 80 56.2
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 3.0e-14 82.4 115 46.1
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 3.0e-14 82.4 116 47.4
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 3.0e-14 82.4 110 44.5
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 8.6e-14 80.9 86 52.3
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.5e-13 80.1 74 56.8
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 4.3e-13 78.6 110 41.8
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 7.3e-13 77.8 79 54.4
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 1.2e-12 77.0 115 44.3
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 8.1e-12 74.3 68 54.4
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 1.1e-11 73.9 111 45.0
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 1.1e-11 73.9 111 41.4
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 1.1e-11 73.9 90 43.3
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.2e-10 70.5 71 56.3
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 2.6e-10 69.3 75 50.7
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 5.8e-10 68.2 62 54.8
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 4.1e-08 62.0 121 38.0
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 6.0e-07 58.2 115 40.0


User provided reference genes

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