Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 3706.0 1962 100.0
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2918.6 1974 79.1
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2883.2 2116 73.6
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2746.5 2008 73.8
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2583.9 2025 68.5
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2565.4 1984 69.4
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 2540.4 1979 69.6
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2536.1 1978 69.0
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2522.7 1991 68.2
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2506.1 2008 67.3
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2486.8 1994 67.7
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 2481.8 1993 67.6
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2479.5 2004 66.7
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2459.9 1983 67.3
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2452.9 1965 67.0
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2449.1 1964 66.8
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2446.0 1965 66.7
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2435.6 1983 66.5
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 2432.9 1989 66.3
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2427.1 1983 66.3
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2410.9 1985 67.1
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2407.5 1988 66.6
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2407.1 1990 66.6
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2404.0 1969 66.4
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2352.8 1992 64.8
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2320.0 1968 64.5
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 2309.6 1968 63.9
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 2307.3 2021 63.2
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 2305.0 1644 71.5
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 2296.2 1951 64.1
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 2292.3 1607 73.2
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2290.0 1549 74.4
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2277.7 1976 64.0
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 2274.6 1956 63.7
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 2273.8 1981 62.9
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2270.7 1546 74.0
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 2269.2 1991 62.5
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 2256.1 1985 62.3
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 2249.6 1965 62.7
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 2243.0 1965 62.8
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2216.0 2009 60.4
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 2211.4 1993 61.1
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 2209.5 1973 61.9
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 2204.5 2006 61.1
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 2199.1 1975 60.9
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2192.5 2000 60.5
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 2189.8 1997 60.3
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2184.5 1917 62.1
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 2141.3 1573 69.9
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2140.2 1203 92.2
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 2131.3 1985 59.3
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 2085.8 2008 57.7
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 2078.1 2142 56.5
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 2077.4 1982 58.9
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 2071.2 2004 57.4
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 2070.4 2079 56.4
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 2055.4 1476 70.4
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 2035.8 2120 55.1
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 2025.0 1968 58.7
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 2015.4 2008 56.2
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 2007.3 1995 56.8
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1993.0 1337 75.0
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1991.1 1707 64.7
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1988.0 1998 56.6
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1987.6 1984 56.9
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1986.5 2015 55.8
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1985.7 1995 56.2
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1983.4 2016 55.4
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1981.5 1985 56.9
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1976.8 2008 55.7
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1974.1 1857 57.6
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1972.6 1841 57.8
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1971.8 1843 57.7
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1970.3 2072 54.8
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1967.6 1959 55.9
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1963.0 1984 55.2
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1959.9 1826 57.8
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1957.2 1857 57.7
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1951.8 1704 60.4
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1944.9 1869 56.4
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1933.7 1635 61.6
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1906.0 1999 54.3
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1849.7 1973 52.5
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1836.2 1243 74.9
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1827.8 1867 54.1
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1825.8 1964 53.0
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1824.3 1833 54.2
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1803.5 1941 52.4
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1801.2 1589 61.0
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1801.2 1589 61.0
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1800.8 2012 51.2
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1791.5 1984 51.5
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1786.5 1859 53.4
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1769.2 1983 52.5
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1759.6 1988 52.6
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1746.9 1476 61.1
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1737.6 1763 55.1
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1726.5 1964 51.1
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1699.5 1620 56.5
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1629.0 1991 48.2
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1190.6 1740 41.3
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1127.1 1140 58.9
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 0.0e+00 1117.8 976 61.4
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 0.0e+00 1105.5 1566 41.8
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1099.0 898 63.9
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 0.0e+00 1089.7 1733 39.5
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 0.0e+00 1077.0 1706 39.9
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1075.1 1636 42.2
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 5.8e-305 1052.0 1955 37.3
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 3.1e-290 1003.0 1171 51.2
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 7.1e-287 991.9 1132 54.0
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 2.8e-275 953.4 1021 58.1
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.9e-260 904.0 761 60.2
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 3.4e-249 866.7 469 94.2
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 7.7e-249 865.5 1111 47.4
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 5.1e-237 826.2 1468 36.3
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 2.6e-225 787.3 580 69.1
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 5.9e-225 786.2 1774 31.8
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 9.1e-210 735.7 541 70.8
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 2.9e-208 730.7 1170 40.9
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 5.6e-159 567.0 663 49.5
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 5.8e-148 530.4 571 50.6
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 1.0e-144 519.6 823 40.7
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 5.1e-144 517.3 546 52.9
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.3e-143 514.6 562 48.8
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 4.5e-132 477.6 759 44.7
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 2.2e-102 379.0 286 67.5
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 2.1e-81 309.3 378 48.1
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 4.7e-81 308.1 464 42.0
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 1.6e-68 266.5 380 42.9
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 2.1e-60 239.6 254 48.4
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 7.8e-60 237.7 322 42.9
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 4.7e-57 228.4 742 31.1
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 1.4e-48 200.3 348 39.7
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 3.2e-45 189.1 182 56.0
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 3.2e-45 189.1 137 66.4
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.1e-42 180.6 225 43.1
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 8.1e-41 174.5 403 35.7
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 6.0e-36 158.3 164 48.8
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 1.0e-35 157.5 1223 21.3
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 2.1e-33 149.8 163 48.5
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.8e-32 146.7 107 68.2
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 9.0e-32 144.4 372 32.5
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 1.2e-31 144.1 164 44.5
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 7.6e-31 141.4 117 60.7
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.2e-28 134.0 80 76.2
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 6.0e-28 131.7 228 39.5
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 6.0e-28 131.7 85 77.6
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.0e-27 131.0 94 71.3
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 2.3e-27 129.8 154 49.4
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 1.6e-25 123.6 1038 20.9
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 6.3e-25 121.7 140 51.4
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 2.5e-18 99.8 201 35.8
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 1.6e-17 97.1 141 46.1
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.2e-15 90.9 56 73.2
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 1.5e-15 90.5 144 41.7
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 3.8e-14 85.9 56 71.4
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 6.1e-12 78.6 71 57.7
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 3.3e-10 72.8 70 51.4
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 4.3e-10 72.4 111 43.2
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 1.4e-08 67.4 59 57.6
Psat1g112240 Pisum sativum HOM05D004392 ORTHO05D029174 2.2e-06 60.1 62 50.0


User provided reference genes

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