Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 1.8e-251 872.1 437 100.0
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 1.7e-209 732.6 444 83.6
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 7.2e-208 727.2 444 82.7
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 6.1e-207 724.2 449 82.2
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 2.9e-201 705.3 444 79.5
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 2.5e-200 702.2 437 79.6
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 2.1e-199 699.1 435 80.2
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 3.1e-198 695.3 443 79.9
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 5.2e-198 694.5 443 79.7
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 4.4e-197 691.4 439 78.4
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 2.9e-196 688.7 437 79.6
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 3.7e-196 688.3 435 78.6
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 6.4e-196 687.6 438 79.9
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.1e-195 684.9 444 78.4
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 5.4e-195 684.5 444 78.4
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 9.2e-195 683.7 441 76.9
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.0e-194 682.6 444 77.9
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 2.7e-194 682.2 438 78.3
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 3.5e-194 681.8 435 78.4
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 7.8e-194 680.6 445 77.5
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 1.0e-193 680.2 430 78.6
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 1.7e-193 679.5 441 78.2
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 6.6e-193 677.6 444 77.3
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 8.6e-193 677.2 432 78.5
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 1.5e-192 676.4 446 76.9
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 3.3e-192 675.2 427 78.2
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 5.6e-192 674.5 427 78.5
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 7.3e-192 674.1 444 77.7
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 7.3e-192 674.1 427 78.2
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 1.6e-191 672.9 436 76.6
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 2.1e-191 672.5 438 77.9
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 1.4e-190 669.8 444 77.0
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 3.1e-190 668.7 439 76.8
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 3.1e-190 668.7 439 76.8
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 6.8e-190 667.5 430 78.4
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 1.2e-189 666.8 432 77.3
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 3.4e-189 665.2 429 77.2
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 3.4e-189 665.2 433 78.1
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 5.8e-189 664.5 433 76.9
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 9.8e-189 663.7 433 76.9
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 1.9e-187 659.4 444 75.7
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 1.9e-187 659.4 441 76.2
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 5.4e-187 657.9 433 76.4
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 7.0e-187 657.5 434 76.3
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 7.0e-187 657.5 431 76.8
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 1.6e-186 656.4 427 75.9
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 6.0e-186 654.4 430 76.5
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 6.0e-186 654.4 437 76.2
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 2.3e-185 652.5 444 72.5
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 3.9e-185 651.7 423 76.6
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 3.9e-185 651.7 444 73.2
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 6.6e-185 651.0 423 76.6
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 8.6e-185 650.6 432 74.5
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 1.5e-184 649.8 424 76.9
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 1.9e-184 649.4 441 75.7
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 2.5e-184 649.0 433 74.8
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 3.3e-184 648.7 421 78.1
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 4.3e-184 648.3 423 75.7
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 5.6e-184 647.9 423 75.9
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 7.3e-184 647.5 423 76.1
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 7.3e-184 647.5 441 73.7
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 9.5e-184 647.1 425 75.8
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.2e-183 646.7 442 72.9
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 1.2e-183 646.7 435 74.7
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 2.1e-183 646.0 432 74.5
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.1e-183 646.0 440 73.0
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 2.8e-183 645.6 437 74.8
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 3.6e-183 645.2 432 75.7
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 4.7e-183 644.8 436 72.7
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 4.7e-183 644.8 432 75.7
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 6.2e-183 644.4 433 74.1
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 8.1e-183 644.0 428 76.2
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 2.3e-182 642.5 438 74.7
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 4.0e-182 641.7 423 75.9
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 4.0e-182 641.7 423 75.9
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 8.9e-182 640.6 428 75.0
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 1.2e-181 640.2 434 74.7
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 1.2e-181 640.2 436 74.1
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 2.0e-181 639.4 433 75.1
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 2.6e-181 639.0 424 75.9
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 3.4e-181 638.6 423 75.7
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 7.5e-181 637.5 424 74.1
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 1.3e-180 636.7 425 74.4
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 2.9e-180 635.6 427 74.7
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 4.9e-180 634.8 430 73.7
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 4.9e-180 634.8 431 73.5
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 4.9e-180 634.8 434 73.5
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 6.4e-180 634.4 443 73.1
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 8.3e-180 634.0 430 74.0
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.1e-179 633.6 434 74.0
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 2.4e-179 632.5 434 74.0
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 2.4e-179 632.5 435 73.8
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 3.2e-179 632.1 429 74.6
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 1.7e-177 626.3 435 72.9
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 6.6e-177 624.4 434 73.0
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.5e-176 623.2 435 72.0
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 5.2e-174 614.8 432 71.1
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 1.9e-171 606.3 419 72.8
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 5.1e-169 598.2 424 72.6
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 4.3e-168 595.1 414 71.3
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 6.9e-166 587.8 430 68.6
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 9.0e-166 587.4 423 71.4
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.3e-164 583.6 407 73.2
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 7.8e-162 574.3 422 68.2
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 2.1e-159 566.2 377 76.1
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 3.6e-159 565.5 421 68.6
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 2.0e-157 559.7 387 74.7
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 2.9e-156 555.8 393 73.0
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 1.4e-155 553.5 433 66.3
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 1.6e-154 550.1 372 75.0
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 2.1e-154 549.7 427 65.3
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 4.6e-154 548.5 431 66.4
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 1.0e-153 547.4 400 69.8
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 1.3e-153 547.0 431 64.3
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 9.6e-152 540.8 437 63.8
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 1.6e-151 540.0 431 64.0
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 2.8e-151 539.3 370 73.0
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 6.9e-150 534.6 421 64.1
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 2.6e-149 532.7 433 62.8
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 4.5e-149 531.9 420 64.8
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 3.8e-148 528.9 443 63.7
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 5.5e-147 525.0 421 63.4
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 3.5e-146 522.3 422 62.8
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 4.6e-146 521.9 423 62.2
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 7.9e-146 521.2 428 61.4
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 5.1e-145 518.5 429 61.5
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 2.8e-143 512.7 419 62.3
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 2.7e-138 496.1 422 61.8
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 1.1e-134 484.2 336 74.1
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 3.1e-134 482.6 435 60.0
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 7.7e-133 478.0 428 60.3
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 2.5e-131 473.0 425 58.1
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 3.6e-130 469.2 443 60.5
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 6.1e-130 468.4 347 70.3
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 1.1e-126 457.6 446 54.7
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.8e-126 456.8 371 62.8
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 2.6e-125 453.0 444 55.0
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 2.2e-124 449.9 447 54.1
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 2.5e-123 446.4 429 56.4
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 1.8e-121 440.3 419 56.1
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 7.0e-118 428.3 407 54.1
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 2.6e-117 426.4 318 69.5
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 9.7e-112 407.9 380 59.5
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 3.7e-111 406.0 430 51.9
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 1.1e-110 404.4 426 51.6
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 2.6e-109 399.8 390 60.5
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.2e-106 391.0 377 55.4
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 1.6e-106 390.6 280 69.3
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 8.3e-103 378.3 378 55.0
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 9.4e-99 364.8 227 74.0
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 4.1e-94 349.4 385 53.8
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 1.4e-86 324.3 173 88.4
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 8.6e-84 315.1 303 56.1
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 3.9e-76 289.7 251 61.8
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 2.6e-72 276.9 245 61.6
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.2e-62 243.4 205 57.6
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.2e-62 243.4 205 57.6
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.5e-61 240.0 198 59.1
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.5e-61 240.0 198 59.1
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.5e-61 240.0 198 59.1
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 5.4e-54 216.1 115 87.8
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 7.1e-54 215.7 219 57.1
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 7.1e-54 215.7 219 57.1
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 7.1e-54 215.7 219 57.1
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 3.9e-52 209.9 113 85.8
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 9.0e-41 172.2 99 80.8
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 2.9e-39 167.2 88 87.5
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.2e-38 163.7 88 85.2
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 2.7e-37 160.6 162 58.0
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 7.4e-35 152.5 92 76.1
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.3e-34 151.8 135 60.0
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 1.2e-32 145.2 138 55.8
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 6.5e-31 139.4 76 82.9
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 4.3e-27 126.7 148 50.7
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.8e-25 121.3 71 80.3
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 1.7e-23 114.8 81 65.4
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 1.7e-23 114.8 64 79.7
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 8.4e-23 112.5 57 89.5
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 9.3e-22 109.0 56 89.3
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.5e-19 100.9 140 50.0
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 2.5e-19 100.9 115 50.4
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 3.2e-14 84.0 345 25.8
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 6.1e-13 79.7 43 83.7
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 3.3e-11 73.9 42 76.2


User provided reference genes

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