Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p044083 Quercus lobata HOM05D006785 ORTHO05D006259 7.7e-133 477.6 337 100.0
Cfa021376 Carpinus fangiana HOM05D006785 ORTHO05D006259 1.1e-70 271.2 342 69.6
Haze_13495 Corylus avellana HOM05D006785 ORTHO05D006259 2.8e-66 256.5 340 68.2
ClCG02G018390 Citrullus lanatus HOM05D006785 ORTHO05D006259 3.7e-58 229.6 333 54.7
Sed0007746 Sechium edule HOM05D006785 ORTHO05D006259 3.1e-57 226.5 328 61.0
CiPaw.03G189000 Carya illinoinensis HOM05D006785 ORTHO05D006259 1.0e-55 221.5 327 56.3
CsaV3_6G015830 Cucumis sativus L. HOM05D006785 ORTHO05D006259 1.0e-55 221.5 340 49.1
MELO3C019688.2 Cucumis melo HOM05D006785 ORTHO05D006259 6.0e-53 212.2 340 56.5
TWI59G0461 Tripterygium wilfordii HOM05D006785 ORTHO05D006259 2.4e-49 200.3 345 51.9
PGR042G2728 Punica granatum HOM05D006785 ORTHO05D006259 3.4e-48 196.4 329 49.8
Sed0020726 Sechium edule HOM05D006785 ORTHO05D006259 1.6e-45 187.6 338 39.6
MD09G1151900 Malus domestica HOM05D006785 ORTHO05D006259 5.1e-44 182.6 248 56.9
Manes.02G084200 Manihot esculenta HOM05D006785 ORTHO05D006259 2.0e-40 170.6 338 41.1
CANSAT64G1891 Cannabis sativa HOM05D006785 ORTHO05D006259 5.9e-40 169.1 335 49.9
MD17G1139500 Malus domestica HOM05D006785 ORTHO05D006259 3.8e-39 166.4 248 53.2
Cpa.g.sc50.80 Carica papaya HOM05D006785 ORTHO05D006259 1.9e-38 164.1 331 53.5
Dinv07090 Davidia involucrata HOM05D006785 ORTHO05D006259 9.4e-38 161.8 367 46.0
Lalb_Chr10g0106721 Lupinus albus HOM05D006785 ORTHO05D006259 1.4e-36 157.9 295 53.9
AT1G06530 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 2.3e-36 157.1 333 38.1
Lalb_Chr17g0348301 Lupinus albus HOM05D006785 ORTHO05D006259 2.3e-36 157.1 297 56.6
Prupe.3G172600 Prunus persica HOM05D006785 ORTHO05D006259 3.9e-36 156.4 338 50.3
FAN09G1973 Fragaria x ananassa HOM05D006785 ORTHO05D006259 1.1e-35 154.8 327 45.6
Manes.01G127500 Manihot esculenta HOM05D006785 ORTHO05D006259 3.7e-34 149.8 342 37.1
Actinidia32516 Actinidia chinensis HOM05D006785 ORTHO05D006259 4.8e-34 149.4 364 36.3
Carub.0001s0590 Capsella rubella HOM05D006785 ORTHO05D006259 4.8e-34 149.4 341 34.9
FAN02G2853 Fragaria x ananassa HOM05D006785 ORTHO05D006259 6.3e-34 149.1 319 47.3
Atru.chr6.2094 Acer truncatum HOM05D006785 ORTHO05D006259 1.4e-33 147.9 331 45.9
FAN05G2931 Fragaria x ananassa HOM05D006785 ORTHO05D006259 1.4e-33 147.9 319 44.8
CSS0028256 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 4.1e-33 146.4 368 36.7
CSS0047125 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 4.1e-33 146.4 368 36.7
FAN14G2666 Fragaria x ananassa HOM05D006785 ORTHO05D006259 1.2e-32 144.8 328 46.6
arahy.Tifrunner.gnm1.ann1.PX2Y9B Arachis hypogaea HOM05D006785 ORTHO05D006259 1.5e-32 144.4 293 49.1
Medtr5g091710 Medicago truncatula HOM05D006785 ORTHO05D006259 4.5e-32 142.9 296 53.4
THA.LOC104802276 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 7.7e-32 142.1 340 50.3
Ca_06284_v3 Cicer arietinum L. HOM05D006785 ORTHO05D006259 1.3e-31 141.4 289 53.3
RcHm_v2.0_Chr2g0151481 Rosa chinensis HOM05D006785 ORTHO05D006259 5.0e-31 139.4 313 48.2
Glyma.02G287000 Glycine max HOM05D006785 ORTHO05D006259 2.7e-29 133.7 311 46.6
arahy.Tifrunner.gnm1.ann1.W4MS3F Arachis hypogaea HOM05D006785 ORTHO05D006259 8.8e-28 128.6 293 48.5
AL1G16560 Arabidopsis lyrata HOM05D006785 ORTHO05D006259 2.0e-27 127.5 287 47.0
TPR.G12660 Trifolium pratense HOM05D006785 ORTHO05D006259 4.4e-27 126.3 292 47.9
Gohir.A12G079000 Gossypium hirsutum HOM05D006785 ORTHO05D006259 7.0e-25 119.0 337 40.1
Gorai.008G098200 Gossypium raimondii HOM05D006785 ORTHO05D006259 4.5e-24 116.3 337 38.3
Eucgr.A01969 Eucalyptus grandis HOM05D006785 ORTHO05D006259 5.9e-24 115.9 338 38.2
Nn3g20927 Nelumbo nucifera HOM05D006785 ORTHO05D006259 1.0e-23 115.2 365 31.0
Gohir.D12G068400 Gossypium hirsutum HOM05D006785 ORTHO05D006259 5.5e-22 109.4 337 37.4
Ciclev10032336m.g Citrus clementina HOM05D006785 ORTHO05D006259 7.2e-22 109.0 334 43.7
Psat2g015800 Pisum sativum HOM05D006785 ORTHO05D006259 1.2e-21 108.2 296 46.3
vmacro12460 Vaccinium macrocarpon HOM05D006785 ORTHO05D006259 2.7e-21 107.1 325 32.0
VMungo0647G1995 Vigna mungo HOM05D006785 ORTHO05D006259 6.7e-20 102.4 311 37.3
Lj1P620T12 Lonicera japonica HOM05D006785 ORTHO05D006259 1.1e-19 101.7 272 31.6
Thecc.01G161700 Theobroma cacao HOM05D006785 ORTHO05D006259 1.5e-19 101.3 209 50.2
arahy.Tifrunner.gnm1.ann1.SE4LXZ Arachis hypogaea HOM05D006785 ORTHO05D006259 2.0e-19 100.9 241 42.7
Thhalv10009835m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 2.0e-19 100.9 287 36.6
THA.LOC104800823 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 5.7e-19 99.4 209 35.9
BraA05t19307Z Brassica rapa HOM05D006785 ORTHO05D006259 4.8e-18 96.3 236 33.9
Phvul.008G191300 Phaseolus vulgaris HOM05D006785 ORTHO05D006259 6.3e-18 95.9 323 35.6
Potri.005G201400 Populus trichocarpa HOM05D006785 ORTHO05D006259 8.2e-18 95.5 339 40.7
Glyma.14G027900 Glycine max HOM05D006785 ORTHO05D006259 1.1e-17 95.1 312 40.7
Duzib264G0099 Durio zibethinus HOM05D006785 ORTHO05D006259 1.4e-17 94.7 205 53.7
Aa31LG5G5980 Aethionema arabicum HOM05D006785 ORTHO05D006259 1.8e-17 94.4 302 40.4
C04p03820 Brassica napus HOM05D006785 ORTHO05D006259 4.1e-17 93.2 234 33.8
Sp4g24990 Schrenkiella parvula HOM05D006785 ORTHO05D006259 5.3e-17 92.8 339 31.9
Potri.002G060200 Populus trichocarpa HOM05D006785 ORTHO05D006259 2.7e-16 90.5 146 59.6
Sp1g05290 Schrenkiella parvula HOM05D006785 ORTHO05D006259 3.5e-16 90.1 166 48.8
BolC4t22018H Brassica oleracea HOM05D006785 ORTHO05D006259 1.7e-15 87.8 234 32.9
Rhsim06G0116700 Rhododendron simsii HOM05D006785 ORTHO05D006259 1.7e-15 87.8 344 29.7
CARHR006150 Cardamine hirsuta HOM05D006785 ORTHO05D006259 5.0e-15 86.3 211 35.1
Hma1.2p1_0960F.1_g241635 Hydrangea macrophylla HOM05D006785 ORTHO05D006259 5.0e-15 86.3 283 32.2
C05p04790 Brassica napus HOM05D006785 ORTHO05D006259 8.5e-15 85.5 221 42.1
Lalb_Chr05g0211951 Lupinus albus HOM05D006785 ORTHO05D006259 8.5e-15 85.5 134 40.3
Thhalv10006112m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 3.2e-14 83.6 236 33.1
DCAR_013314 Daucus carota HOM05D006785 ORTHO05D006259 9.4e-14 82.0 347 28.2
Sabra02G0048700 Salix brachista HOM05D006785 ORTHO05D006259 9.4e-14 82.0 339 42.8
Duzib147G0591 Durio zibethinus HOM05D006785 ORTHO05D006259 1.6e-13 81.3 337 46.0
Gohir.D04G036800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.6e-13 81.3 173 43.9
Gorai.012G041600 Gossypium raimondii HOM05D006785 ORTHO05D006259 1.6e-13 81.3 173 44.5
TAR627G0640 Trochodendron aralioides HOM05D006785 ORTHO05D006259 1.6e-13 81.3 264 40.2
BcaB02g06783 Brassica carinata HOM05D006785 ORTHO05D006259 3.6e-13 80.1 239 43.1
MBI10_g42732_MAGBIO Magnolia biondii HOM05D006785 ORTHO05D006259 3.6e-13 80.1 108 46.3
LjContig00310g0014416 Lotus japonicus HOM05D006785 ORTHO05D006259 1.0e-12 78.6 317 33.4
AT3G58840 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 1.4e-12 78.2 236 40.3
Aa31LG1G7630 Aethionema arabicum HOM05D006785 ORTHO05D006259 5.2e-12 76.3 147 41.5
Gohir.A05G378800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.2e-11 75.1 306 34.3
TAR629G3165 Trochodendron aralioides HOM05D006785 ORTHO05D006259 2.0e-11 74.3 146 37.7
TAR622G1344 Trochodendron aralioides HOM05D006785 ORTHO05D006259 7.5e-11 72.4 111 43.2
Carub.0005s2562 Capsella rubella HOM05D006785 ORTHO05D006259 9.8e-11 72.0 240 35.0
Duzib187G1417 Durio zibethinus HOM05D006785 ORTHO05D006259 1.7e-10 71.2 203 59.1
PSO541G2000 Papaver somniferum HOM05D006785 ORTHO05D006259 1.1e-09 68.6 135 40.0
PSO675G6378 Papaver somniferum HOM05D006785 ORTHO05D006259 1.1e-09 68.6 135 40.0
CARHR169250 Cardamine hirsuta HOM05D006785 ORTHO05D006259 3.1e-09 67.0 146 39.0
BraA07t30085Z Brassica rapa HOM05D006785 ORTHO05D023842 5.4e-09 66.2 182 47.3
Lsat_1_v5_gn_6_18081 Lactuca sativa HOM05D009485 ORTHO05D006259 9.1e-09 65.5 357 31.9
A07p24380 Brassica napus HOM05D006785 ORTHO05D006259 1.6e-08 64.7 246 39.0
Gohir.A11G224802 Gossypium hirsutum HOM05D006785 ORTHO05D006259 2.0e-08 64.3 323 36.2
Actinidia11204 Actinidia chinensis HOM05D006785 ORTHO05D006259 2.7e-08 63.9 369 25.5
Oeu036701.1 Olea europaea HOM05D006851 ORTHO05D008844 5.9e-08 62.8 339 28.0
BcaB02g07495 Brassica carinata HOM05D006785 ORTHO05D006259 1.0e-07 62.0 306 34.6
HanXRQChr08g0227971 Helianthus annuus HOM05D009485 ORTHO05D006259 1.3e-07 61.6 126 31.7
Nitab4.5_0002027g0170 Nicotiana tabacum HOM05D009485 ORTHO05D006259 1.7e-07 61.2 137 49.6
Peaxi162Scf00035g00291 Petunia axillaris HOM05D009485 ORTHO05D006259 1.7e-07 61.2 328 34.8
Migut.M00503 Erythranthe guttata HOM05D009485 ORTHO05D006259 5.0e-07 59.7 355 27.6
ECA233G1175 Erigeron canadensis HOM05D009485 ORTHO05D006259 6.5e-07 59.3 160 31.9
Aa31LG10G13400 Aethionema arabicum HOM05D006785 ORTHO05D006259 8.5e-07 58.9 206 37.4
Nitab4.5_0001402g0020 Nicotiana tabacum HOM05D009485 ORTHO05D006259 1.1e-06 58.5 148 48.0
Ca_25754_v3 Cicer arietinum L. HOM05D021759 ORTHO05D020454 1.9e-06 57.8 145 32.4
MSTRG.6747 Avicennia marina HOM05D009485 ORTHO05D006259 3.2e-06 57.0 135 42.2
BcaB06g29269 Brassica carinata HOM05D006785 ORTHO05D006259 7.2e-06 55.8 67 49.3
Sp5g04020 Schrenkiella parvula HOM05D006785 ORTHO05D006259 7.2e-06 55.8 139 36.0


User provided reference genes

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