Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1973.0 988 100.0
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1811.6 985 91.3
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1801.9 985 90.7
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1783.8 983 89.1
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1783.1 984 89.3
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1782.7 984 89.1
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1778.5 984 90.0
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1772.7 986 88.7
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1762.3 988 88.7
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1762.3 986 89.1
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1761.5 985 88.8
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1760.3 987 88.1
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1756.9 988 87.1
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1756.5 985 88.7
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1756.1 983 88.2
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1756.1 988 87.9
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1754.2 984 88.2
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1752.6 988 88.3
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1751.9 1079 82.9
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1749.6 988 86.6
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1748.4 988 86.7
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1744.6 1012 86.4
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1744.2 1012 86.4
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1736.9 984 87.5
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1733.8 989 86.8
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1729.1 987 86.3
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1729.1 986 86.6
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1728.8 987 86.8
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1727.6 990 86.4
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1726.5 1012 85.5
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1719.1 994 85.7
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1711.8 989 85.6
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1710.7 1011 84.6
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1709.5 987 85.7
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1706.0 991 85.6
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1700.6 984 84.6
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1699.5 987 84.6
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1695.2 993 84.8
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1687.2 985 84.9
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1686.0 988 84.2
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1683.7 992 84.0
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1683.7 1027 82.5
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1682.5 979 84.1
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1681.8 999 84.0
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1678.3 979 84.1
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1677.1 990 83.5
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1676.4 986 84.6
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1675.6 1073 79.4
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1674.8 990 83.2
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1671.0 989 83.0
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1669.4 989 84.0
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1669.4 984 82.6
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1667.1 989 84.4
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1666.7 989 82.8
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1666.4 991 82.8
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1664.0 990 82.4
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1663.7 989 82.6
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1663.3 988 83.3
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1656.7 984 83.0
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1656.7 984 84.1
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1656.3 1023 83.0
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1655.2 1001 81.6
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1653.6 991 82.3
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1651.3 989 81.8
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1651.3 988 84.1
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1647.1 982 83.8
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1645.6 986 83.4
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1645.2 989 81.9
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1642.1 997 82.1
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1640.6 995 81.7
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1638.6 1004 80.5
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1637.9 933 86.8
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1637.1 980 82.6
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1632.1 1004 80.5
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1626.7 988 82.0
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1622.8 1006 79.8
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1622.8 985 81.5
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1622.4 982 81.8
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1614.0 984 80.9
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1607.4 983 81.1
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1607.4 1016 79.7
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1600.9 936 85.1
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1588.2 1039 76.9
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1584.7 984 79.9
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1579.3 983 80.1
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1575.8 928 84.9
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1539.2 992 76.0
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1521.9 984 77.6
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1511.5 985 78.0
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1484.2 894 81.4
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1466.1 847 85.5
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1460.7 985 73.5
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1443.3 816 88.2
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1426.8 799 89.9
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1413.7 989 72.3
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1388.6 792 87.2
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1362.8 768 87.9
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1347.8 792 85.1
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1345.9 791 84.3
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1344.3 853 79.6
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1342.8 991 71.7
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1338.2 951 71.3
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1327.0 761 86.6
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1291.2 760 84.7
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1229.5 779 80.5
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1193.3 995 61.2
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1178.7 761 79.2
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1176.4 647 92.4
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1172.1 994 59.2
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 5.1e-294 1014.6 558 90.3
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.1e-293 1013.4 606 82.3
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 1.1e-293 1013.4 664 76.5
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 1.3e-292 1010.0 988 52.0
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 2.9e-289 998.8 790 62.8
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.1e-256 890.6 569 78.0
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 3.6e-255 885.6 520 84.2
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 3.5e-250 869.0 607 70.0
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 5.9e-250 868.2 514 84.6
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 3.2e-211 739.6 419 85.0
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 7.7e-173 612.1 336 88.7
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 4.5e-157 559.7 333 82.9
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.3e-145 520.8 282 89.7
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 2.0e-125 454.5 1072 31.5
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 4.9e-119 433.3 249 86.7
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 1.5e-107 395.2 226 82.3
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 2.2e-103 381.3 1266 27.0
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 2.4e-102 377.9 1006 28.7
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 5.4e-102 376.7 225 78.7
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 2.3e-100 371.3 268 71.6
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 6.2e-98 363.2 203 85.7
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 3.0e-92 344.4 208 80.3
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 1.1e-89 335.9 230 70.9
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 3.0e-84 317.8 198 79.8
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 3.1e-81 307.8 178 81.5
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 2.7e-77 294.7 302 53.0
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.3e-76 291.6 212 69.8
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 2.1e-69 268.5 441 37.9
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 6.1e-69 266.9 154 83.1
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 9.7e-59 233.0 152 75.0
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 7.7e-56 223.4 124 83.9
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 1.2e-53 216.1 135 73.3
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 3.8e-47 194.5 119 76.5
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 4.8e-42 177.6 163 59.5
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.1e-38 166.4 129 65.1
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.9e-38 165.6 174 56.9
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.9e-38 165.6 106 75.5
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.2e-36 157.5 94 79.8
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 1.7e-34 152.5 88 79.5
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.5e-30 137.5 73 94.5
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 1.6e-29 136.0 98 68.4
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.2e-27 129.8 131 59.5
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.6e-27 128.6 127 59.8
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 8.3e-26 123.6 75 80.0
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 2.4e-25 122.1 75 78.7
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.0e-24 119.0 81 65.4
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.9e-24 117.5 108 58.3
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.3e-23 116.3 91 65.9
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 7.3e-22 110.5 80 78.8
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 1.4e-17 96.3 52 84.6
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 9.2e-17 93.6 100 53.0
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 2.0e-16 92.4 86 52.3
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.7e-16 92.0 54 79.6
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.0e-15 87.8 117 41.0
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 4.7e-13 81.3 160 35.6
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 2.3e-12 79.0 233 23.6
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.5e-11 76.3 47 66.0
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 5.0e-07 61.2 50 58.0
Actinidia13759 Actinidia chinensis HOM05D002694 ORTHO05D002927 1.9e-06 59.3 35 77.1
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 2.5e-06 58.9 47 63.8


User provided reference genes

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