Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1297.0 647 100.0
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1176.8 647 92.4
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1084.7 643 85.7
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1082.4 643 84.9
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 3.1e-311 1071.2 647 83.8
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 2.6e-310 1068.1 643 83.8
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 9.7e-310 1066.2 643 84.0
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 6.3e-309 1063.5 688 79.8
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 4.1e-308 1060.8 643 83.4
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 4.5e-307 1057.4 643 82.7
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 2.9e-306 1054.7 642 82.1
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 4.2e-305 1050.8 643 81.3
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 2.7e-304 1048.1 643 82.3
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 3.0e-303 1044.6 643 81.5
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 5.2e-303 1043.9 643 82.1
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 8.8e-303 1043.1 642 81.6
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 2.0e-302 1042.0 643 82.3
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 2.6e-302 1041.6 643 81.2
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 4.4e-302 1040.8 643 81.3
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 6.3e-301 1036.9 647 81.6
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 8.3e-301 1036.6 643 80.7
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.2e-299 1032.7 643 80.7
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 1.2e-299 1032.7 643 79.9
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 1.2e-299 1032.7 648 81.3
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 1.2e-299 1032.7 642 80.8
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 2.7e-299 1031.6 647 80.1
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 5.9e-299 1030.4 647 81.0
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 7.7e-299 1030.0 647 81.0
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 1.3e-298 1029.2 642 80.8
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.7e-298 1028.9 643 80.1
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 6.5e-298 1026.9 643 79.6
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 1.1e-297 1026.2 643 79.8
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 1.9e-297 1025.4 644 80.1
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 5.5e-297 1023.8 652 79.4
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 5.5e-297 1023.8 643 79.8
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 7.2e-297 1023.5 644 80.3
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 7.2e-297 1023.5 647 80.4
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 8.0e-296 1020.0 671 78.4
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 1.4e-295 1019.2 671 78.4
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 4.4e-294 1014.2 671 77.8
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 5.4e-292 1007.3 643 78.2
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 5.4e-292 1007.3 642 77.9
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 2.0e-291 1005.4 667 76.9
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 2.0e-291 1005.4 659 77.4
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 1.7e-290 1002.3 643 78.1
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 3.8e-290 1001.1 643 78.5
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 3.8e-290 1001.1 647 77.4
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 1.9e-289 998.8 643 78.2
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 7.3e-289 996.9 643 77.9
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 3.6e-288 994.6 651 76.8
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 3.6e-288 994.6 640 77.3
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 4.7e-288 994.2 640 77.3
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 1.0e-287 993.0 643 77.6
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 3.0e-287 991.5 643 77.6
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 6.8e-287 990.3 644 78.1
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 1.2e-286 989.6 643 77.4
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 1.5e-286 989.2 643 77.3
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 4.4e-286 987.6 645 77.2
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 4.4e-286 987.6 651 76.2
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 9.8e-286 986.5 647 75.7
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 3.7e-285 984.6 643 76.8
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 6.4e-285 983.8 642 78.3
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 8.3e-285 983.4 643 76.7
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 1.1e-284 983.0 645 77.1
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 1.8e-284 982.2 650 76.5
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 1.8e-284 982.2 645 76.9
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 4.1e-284 981.1 684 74.1
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 7.0e-284 980.3 642 76.5
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 2.0e-283 978.8 649 76.7
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 2.7e-283 978.4 647 76.0
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 6.0e-283 977.2 643 76.2
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 1.0e-282 976.5 655 75.4
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 1.9e-281 972.2 650 75.5
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 9.5e-281 969.9 641 76.3
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 3.6e-280 968.0 658 74.2
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 1.4e-279 966.1 647 75.9
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 3.1e-279 964.9 642 76.6
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 3.1e-279 964.9 642 77.1
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 4.0e-279 964.5 642 75.9
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 5.8e-278 960.7 662 74.0
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 9.8e-278 959.9 647 75.4
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 1.3e-277 959.5 647 75.0
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 3.7e-277 958.0 642 75.7
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 7.0e-276 953.7 642 74.9
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 2.0e-275 952.2 660 73.2
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 1.7e-274 949.1 644 75.2
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 3.9e-274 948.0 643 75.4
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 4.7e-272 941.0 646 74.3
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 5.2e-271 937.6 663 72.7
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 8.3e-269 930.2 592 78.9
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 3.0e-266 921.8 644 73.8
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 4.0e-263 911.4 674 70.8
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 2.2e-261 905.6 650 69.2
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 1.9e-260 902.5 647 72.0
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 3.5e-259 898.3 593 77.1
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 2.6e-254 882.1 642 71.5
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 7.6e-246 854.0 650 66.8
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.1e-244 850.1 604 72.0
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 1.9e-241 839.3 551 77.1
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 2.6e-238 828.9 642 65.1
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 1.0e-234 817.0 605 68.6
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 8.2e-232 807.4 648 64.7
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 3.6e-211 738.8 415 85.3
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 2.3e-210 736.1 474 79.7
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.6e-206 722.6 649 62.2
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 4.2e-204 715.3 474 77.6
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 9.1e-199 697.6 647 56.1
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 3.5e-198 695.7 645 55.5
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 7.2e-196 688.0 650 53.1
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 1.7e-189 666.8 450 76.7
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 1.5e-185 653.7 429 78.3
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 4.4e-177 625.5 419 76.8
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 5.0e-173 612.1 336 88.7
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 1.9e-172 610.1 644 50.0
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 3.6e-171 605.9 420 74.8
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 6.0e-158 562.0 439 68.8
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 1.5e-145 520.8 408 67.6
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 9.3e-111 405.2 336 64.6
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 9.7e-108 395.2 226 82.3
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 3.6e-102 376.7 225 78.7
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 5.3e-98 362.8 201 86.6
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 7.4e-92 342.4 204 80.4
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 9.1e-90 335.5 228 71.5
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 2.5e-87 327.4 303 60.1
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 2.1e-86 324.3 216 78.7
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 2.0e-81 307.8 178 81.5
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.5e-68 265.0 154 82.5
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 4.2e-63 246.9 421 37.1
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 8.9e-61 239.2 708 28.0
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 6.3e-59 233.0 152 75.0
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 1.8e-58 231.5 139 82.7
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 5.0e-56 223.4 124 83.9
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 2.0e-49 201.4 842 24.9
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 2.7e-49 201.1 648 26.4
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 3.2e-42 177.6 163 59.5
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.4e-36 157.5 94 79.8
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 6.2e-30 136.7 141 56.7
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 5.4e-26 123.6 75 80.0
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 1.2e-25 122.5 75 78.7
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 5.1e-24 117.1 70 81.4
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 8.7e-24 116.3 93 64.5
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.1e-23 115.9 91 65.9
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 4.2e-18 97.4 52 86.5
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.4e-18 97.1 63 68.3
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 6.0e-17 93.6 100 53.0
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 6.6e-16 90.1 45 91.1
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.9e-12 76.3 47 66.0
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 4.2e-10 70.9 44 77.3
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 3.3e-07 61.2 50 58.0
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 1.6e-06 58.9 47 63.8


User provided reference genes

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