Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p033823 Quercus lobata HOM05D001891 ORTHO05D005832 0.0e+00 1143.3 572 100.0
CiPaw.03G162900 Carya illinoinensis HOM05D001891 ORTHO05D005832 9.1e-235 817.0 567 71.6
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 1.3e-233 813.1 567 72.3
Haze_12897 Corylus avellana HOM05D001891 ORTHO05D005832 3.8e-233 811.6 574 72.0
Dinv39687 Davidia involucrata HOM05D001891 ORTHO05D005832 2.2e-220 769.2 564 67.2
Nn1g03668 Nelumbo nucifera HOM05D001891 ORTHO05D005832 6.4e-204 714.5 566 61.7
Ciclev10015025m.g Citrus clementina HOM05D001891 ORTHO05D005832 8.3e-204 714.1 567 64.2
CSS0020073 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D005832 1.2e-202 710.3 567 63.1
TAR624G1196 Trochodendron aralioides HOM05D001891 ORTHO05D005832 7.5e-197 691.0 542 64.0
Thecc.02G162300 Theobroma cacao HOM05D001891 ORTHO05D005832 8.3e-196 687.6 568 61.1
Manes.13G073100 Manihot esculenta HOM05D001891 ORTHO05D005832 1.4e-195 686.8 568 61.1
Prupe.3G220400 Prunus persica HOM05D001891 ORTHO05D005832 1.9e-195 686.4 571 62.5
MD09G1105100 Malus domestica HOM05D001891 ORTHO05D005832 7.0e-195 684.5 569 62.4
GSVIVG01030624001 Vitis vinifera HOM05D001891 ORTHO05D005832 2.1e-194 682.9 565 62.7
CsaV3_2G035180 Cucumis sativus L. HOM05D001891 ORTHO05D005832 1.7e-193 679.9 564 60.5
TWI18G0733 Tripterygium wilfordii HOM05D001891 ORTHO05D005832 1.1e-192 677.2 567 61.6
PSO541G2722 Papaver somniferum HOM05D001891 ORTHO05D005832 5.6e-192 674.9 563 59.5
Duzib052G0092 Durio zibethinus HOM05D001891 ORTHO05D005832 1.2e-191 673.7 567 60.0
Glyma.12G195700 Glycine max HOM05D001891 ORTHO05D005832 4.0e-190 668.7 568 60.7
Medtr2g088820 Medicago truncatula HOM05D001891 ORTHO05D005832 4.4e-189 665.2 569 59.2
TPR.G4158 Trifolium pratense HOM05D001891 ORTHO05D005832 7.5e-189 664.5 567 60.1
VMungo1080G1248 Vigna mungo HOM05D001891 ORTHO05D005832 9.9e-189 664.1 568 60.6
Phvul.005G113700 Phaseolus vulgaris HOM05D001891 ORTHO05D005832 1.1e-187 660.6 568 60.2
RcHm_v2.0_Chr2g0160071 Rosa chinensis HOM05D001891 ORTHO05D005832 1.4e-187 660.2 569 60.5
Actinidia12502 Actinidia chinensis HOM05D001891 ORTHO05D005832 3.2e-187 659.1 592 58.3
Aqoxy4G02100 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 3.2e-187 659.1 564 59.2
arahy.Tifrunner.gnm1.ann1.XAPR04 Arachis hypogaea HOM05D001891 ORTHO05D005832 3.5e-186 655.6 569 59.1
Gorai.002G016300 Gossypium raimondii HOM05D001891 ORTHO05D005832 6.0e-186 654.8 569 58.2
Eucgr.K00860 Eucalyptus grandis HOM05D001891 ORTHO05D005832 7.8e-186 654.4 566 58.0
Psat5g265280 Pisum sativum HOM05D001891 ORTHO05D005832 5.1e-185 651.7 567 59.6
Lalb_Chr24g0393071 Lupinus albus HOM05D001891 ORTHO05D005832 8.6e-185 651.0 566 59.4
Solyc07g052570.4 Solanum lycopersicum HOM05D001891 ORTHO05D005832 1.9e-184 649.8 566 58.7
Gohir.D01G014600 Gossypium hirsutum HOM05D001891 ORTHO05D005832 2.5e-184 649.4 569 58.0
Lj3g0012140 Lotus japonicus HOM05D001891 ORTHO05D005832 9.5e-184 647.5 567 58.4
FAN09G1075 Fragaria x ananassa HOM05D001891 ORTHO05D005832 3.6e-183 645.6 568 59.5
Gohir.A01G013300 Gossypium hirsutum HOM05D001891 ORTHO05D005832 3.6e-183 645.6 567 57.7
Rhsim06G0158100 Rhododendron simsii HOM05D001891 ORTHO05D005832 6.2e-183 644.8 542 60.5
Eucgr.K00822 Eucalyptus grandis HOM05D001891 ORTHO05D005832 2.4e-182 642.9 566 57.8
arahy.Tifrunner.gnm1.ann1.IG5XIH Arachis hypogaea HOM05D001891 ORTHO05D005832 4.0e-182 642.1 569 58.3
Sopen07g026180 Solanum pennellii HOM05D001891 ORTHO05D005832 4.0e-182 642.1 583 57.1
vmacro12227 Vaccinium macrocarpon HOM05D001891 ORTHO05D005832 4.0e-182 642.1 518 62.2
PGR142G2396 Punica granatum HOM05D001891 ORTHO05D005832 1.5e-181 640.2 565 58.8
MBI18_g23508_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.7e-180 636.7 575 56.9
CANSAT64G2761 Cannabis sativa HOM05D001891 ORTHO05D005832 3.2e-179 632.5 555 59.1
THA.LOC104821752 Tarenaya hassleriana HOM05D001891 ORTHO05D005832 7.1e-179 631.3 568 57.9
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 2.7e-178 629.4 598 56.5
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 7.8e-178 627.9 566 57.2
Potri.017G038700 Populus trichocarpa HOM05D001891 ORTHO05D005832 1.5e-176 623.6 567 56.8
MELO3C019236.2 Cucumis melo HOM05D001891 ORTHO05D005832 4.3e-176 622.1 446 67.0
Ah.15g093450 Amaranthus hybridus HOM05D001891 ORTHO05D005832 1.2e-175 620.5 569 55.4
EL10Ac7g17313 Beta vulgaris HOM05D001891 ORTHO05D005832 4.7e-175 618.6 567 55.7
Sp3g19820 Schrenkiella parvula HOM05D001891 ORTHO05D005832 4.7e-175 618.6 564 56.9
FAN05G1073 Fragaria x ananassa HOM05D001891 ORTHO05D005832 8.1e-175 617.8 570 57.7
Peaxi162Scf00007g01229 Petunia axillaris HOM05D001891 ORTHO05D005832 4.0e-174 615.5 600 54.7
AL3G35970 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 2.2e-172 609.8 564 56.6
Cc05_g05050 Coffea canephora HOM05D001891 ORTHO05D005832 2.2e-172 609.8 570 55.4
Thhalv10020639m.g Eutrema salsugineum HOM05D001891 ORTHO05D005832 4.9e-172 608.6 552 56.9
Carub.0003s2190 Capsella rubella HOM05D001891 ORTHO05D005832 7.1e-171 604.7 566 55.3
Oeu041941.2 Olea europaea HOM05D001891 ORTHO05D005832 3.5e-170 602.4 541 56.6
SalBow7G4184 Salvia bowleyana HOM05D001891 ORTHO05D005832 6.0e-170 601.7 563 55.6
AT3G21820 Arabidopsis thaliana HOM05D001891 ORTHO05D005832 3.9e-169 599.0 564 55.9
Aa31LG8G8410 Aethionema arabicum HOM05D001891 ORTHO05D005832 5.1e-169 598.6 564 56.2
Sabra17G0025700 Salix brachista HOM05D001891 ORTHO05D005832 1.1e-168 597.4 559 56.0
MBI18_g19140_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 7.3e-168 594.7 550 56.2
Migut.M00395 Erythranthe guttata HOM05D001891 ORTHO05D005832 1.6e-167 593.6 564 54.8
ECA238G0562 Erigeron canadensis HOM05D001891 ORTHO05D005832 1.1e-166 590.9 568 54.2
ClCG02G008450 Citrullus lanatus HOM05D001891 ORTHO05D005832 2.4e-166 589.7 448 65.4
CAN.G921.8 Capsicum annuum HOM05D001891 ORTHO05D005832 3.8e-164 582.4 515 59.4
CARHR097810 Cardamine hirsuta HOM05D001891 ORTHO05D005832 1.1e-163 580.9 560 54.5
C05p41560 Brassica napus HOM05D001891 ORTHO05D005832 1.4e-163 580.5 566 54.1
BolC5t32893H Brassica oleracea HOM05D001891 ORTHO05D005832 1.4e-163 580.5 566 54.1
Nitab4.5_0001176g0150 Nicotiana tabacum HOM05D001891 ORTHO05D005832 2.4e-163 579.7 513 59.3
BcaC05g28122 Brassica carinata HOM05D001891 ORTHO05D005832 9.3e-163 577.8 564 53.7
HanXRQChr10g0297501 Helianthus annuus HOM05D001891 ORTHO05D005832 6.0e-162 575.1 568 53.2
Atru.chr6.3148 Acer truncatum HOM05D001891 ORTHO05D005832 6.7e-161 571.6 420 67.1
Cpa.g.sc8.235 Carica papaya HOM05D001891 ORTHO05D005832 2.5e-160 569.7 568 54.0
A05p26920 Brassica napus HOM05D001891 ORTHO05D005832 1.6e-159 567.0 538 55.6
BraA05t21572Z Brassica rapa HOM05D001891 ORTHO05D005832 1.6e-159 567.0 538 55.6
Eucgr.K00839 Eucalyptus grandis HOM05D001891 ORTHO05D005832 4.9e-156 555.4 427 62.5
unitig_26.g9659 Utricularia gibba HOM05D001891 ORTHO05D005832 7.1e-155 551.6 568 50.2
BcaB06g26287 Brassica carinata HOM05D001891 ORTHO05D005832 4.6e-154 548.9 552 53.1
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 1.1e-150 537.7 484 59.7
Zm00001eb069580 Zea mays HOM05D001891 ORTHO05D005832 1.1e-147 527.7 565 51.2
Os04g0629100 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D005832 2.2e-143 513.5 567 49.0
SGA_v2.0_scaffold70G23419 Striga asiatica HOM05D001891 ORTHO05D005832 3.8e-140 502.7 569 47.8
Sed0014701 Sechium edule HOM05D001891 ORTHO05D005832 1.9e-139 500.4 366 66.4
ATR0804G013 Amborella trichopoda HOM05D001891 ORTHO05D005832 2.0e-136 490.3 414 58.9
CDE01G0775 Ceratophyllum demersum HOM05D001891 ORTHO05D005832 1.3e-135 487.6 568 44.9
Eucgr.K00818 Eucalyptus grandis HOM05D001891 ORTHO05D005832 5.5e-131 472.2 563 46.0
Eucgr.K00819 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.8e-129 467.2 510 50.2
Hund01107 Selenicereus undatus HOM05D001891 ORTHO05D005832 3.9e-129 466.1 384 60.9
FvH4_6g43540 Fragaria vesca HOM05D001891 ORTHO05D005832 2.7e-122 443.4 365 62.7
MBI18_g07895_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.4e-118 430.3 381 56.7
Aqoxy4G02096 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 3.1e-118 429.9 395 57.2
Lj8A122T61 Lonicera japonica HOM05D001891 ORTHO05D005832 3.1e-118 429.9 371 60.4
Mapoly0057s0093 Marchantia polymorpha HOM05D001891 ORTHO05D005832 1.7e-116 424.1 551 44.3
HPP92_009396 Vanilla planifolia HOM05D001891 ORTHO05D005832 2.0e-112 410.6 540 42.6
Sc12g0002380 Simmondsia chinensis HOM05D001891 ORTHO05D005832 3.4e-112 409.8 334 59.3
Pp3c13_21910 Physcomitrium patens HOM05D001891 ORTHO05D005832 1.3e-111 407.9 556 42.6
AL3G35980 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 1.2e-106 391.3 361 55.7
Glyma.13G306800 Glycine max HOM05D001891 ORTHO05D005832 1.7e-100 370.9 364 55.5
AUR62040522 Chenopodium quinoa HOM05D001891 ORTHO05D005832 4.5e-93 346.3 286 59.8
SMO347G0022 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 8.6e-92 342.0 548 39.1
Eucgr.K00824 Eucalyptus grandis HOM05D001891 ORTHO05D005832 2.3e-89 334.0 563 37.7
DCAR_012956 Daucus carota HOM05D001891 ORTHO05D005832 5.0e-84 316.2 281 58.0
Nitab4.5_0005894g0040 Nicotiana tabacum HOM05D001891 ORTHO05D005832 6.0e-77 292.7 570 34.7
DCAR_012957 Daucus carota HOM05D001891 ORTHO05D005832 1.9e-75 287.7 255 57.3
HPP92_009391 Vanilla planifolia HOM05D001891 ORTHO05D005832 2.1e-74 284.3 361 44.9
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 2.3e-73 280.8 326 50.0
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 2.3e-73 280.8 326 50.0
MCO06G294 Micromonas commoda HOM05D001891 ORTHO05D005832 2.1e-69 267.7 563 32.5
Cre01.g041100 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D005832 6.6e-68 262.7 639 30.4
SMO167G0005 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 5.6e-67 259.6 356 43.0
MBI18_g41217_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.8e-65 254.6 235 57.9
PGSC0003DMG400026174 Solanum tuberosum HOM05D001891 ORTHO05D005832 7.8e-61 239.2 149 75.8
MBI18_g17390_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 6.0e-53 213.0 176 55.7
Psat0s4720g0040 Pisum sativum HOM05D001891 ORTHO05D005832 4.8e-50 203.4 136 69.9
Atru.chr8.690 Acer truncatum HOM05D001891 ORTHO05D005832 2.4e-49 201.1 143 71.3
Eucgr.K00821 Eucalyptus grandis HOM05D001891 ORTHO05D005832 7.6e-48 196.1 193 52.8
SEGI_20287 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 1.9e-43 181.4 169 53.8
MBI18_g41692_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 4.9e-39 166.8 139 56.1
arahy.Tifrunner.gnm1.ann1.R1IBZY Arachis hypogaea HOM05D001891 ORTHO05D005832 9.3e-30 136.0 74 83.8
AL5G18570 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 4.6e-29 133.7 163 44.8
arahy.Tifrunner.gnm1.ann1.2VZW82 Arachis hypogaea HOM05D001891 ORTHO05D005832 1.0e-28 132.5 75 81.3
ATR0008G001 Amborella trichopoda HOM05D001891 ORTHO05D005832 4.3e-27 127.1 119 54.6
MBI18_g10800_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.1e-25 122.5 236 35.2
Psat1g072160 Pisum sativum HOM05D002713 ORTHO05D008299 1.4e-25 122.1 142 48.6
arahy.Tifrunner.gnm1.ann1.62D34N Arachis hypogaea HOM05D001891 ORTHO05D005832 9.0e-25 119.4 74 74.3
Actinidia32078 Actinidia chinensis HOM05D001891 ORTHO05D005832 1.4e-22 112.1 61 85.2
arahy.Tifrunner.gnm1.ann1.I3MG1X Arachis hypogaea HOM05D001891 ORTHO05D005832 1.9e-22 111.7 74 73.0
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 2.3e-20 104.8 116 51.7
PRCOL_00001357 Prasinoderma coloniale HOM05D001891 ORTHO05D005832 1.7e-18 98.6 542 24.2
Glyma.13G037950 Glycine max HOM05D001891 ORTHO05D005832 2.8e-18 97.8 168 38.7
SEGI_29039 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 1.4e-17 95.5 133 42.9
arahy.Tifrunner.gnm1.ann1.LNA654 Arachis hypogaea HOM05D001891 ORTHO05D005832 4.1e-17 94.0 51 78.4
MBI02_g41952_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.9e-17 93.2 48 85.4
arahy.Tifrunner.gnm1.ann1.I8ZYWJ Arachis hypogaea HOM05D001891 ORTHO05D005832 9.1e-17 92.8 51 78.4
MBI01_g06556_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.6e-16 91.3 62 71.0
AL7G32320 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 2.1e-13 81.6 47 80.9
arahy.Tifrunner.gnm1.ann1.6T7UPN Arachis hypogaea HOM05D003636 ORTHO05D005832 3.6e-13 80.9 65 60.0
arahy.Tifrunner.gnm1.ann1.Q3H55W Arachis hypogaea HOM05D003444 ORTHO05D003963 2.3e-12 78.2 108 44.4
arahy.Tifrunner.gnm1.ann1.WYE7TV Arachis hypogaea HOM05D003444 ORTHO05D003963 2.3e-12 78.2 108 44.4
arahy.Tifrunner.gnm1.ann1.J663RV Arachis hypogaea HOM05D002828 ORTHO05D003457 1.1e-11 75.9 108 44.4
BolC1t04191H Brassica oleracea HOM05D001891 ORTHO05D005832 1.1e-11 75.9 42 76.2
AUR62040523 Chenopodium quinoa HOM05D001891 ORTHO05D005832 4.4e-11 73.9 46 71.7
C01p42360 Brassica napus HOM05D001891 ORTHO05D005832 1.7e-10 72.0 42 73.8
arahy.Tifrunner.gnm1.ann1.FTMH30 Arachis hypogaea HOM05D001891 ORTHO05D005832 4.8e-10 70.5 40 80.0
MBI01_g08957_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 4.8e-10 70.5 48 64.6
MBI09_g25176_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012380 1.6e-08 65.5 41 70.7
MBI02_g40253_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012380 2.0e-08 65.1 41 70.7
MBI03_g41360_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012380 3.5e-08 64.3 41 68.3
Medtr2g088740 Medicago truncatula HOM05D001891 ORTHO05D002335 7.7e-08 63.2 33 75.8
Cre13.g580550 Chlamydomonas reinhardtii HOM05D004492 ORTHO05D005602 1.1e-06 59.3 54 50.0
MCO05G707 Micromonas commoda HOM05D001891 ORTHO05D024999 3.2e-06 57.8 44 56.8
Cre02.g116850 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D009514 9.4e-06 56.2 52 48.1


User provided reference genes

Program Settings