Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 5.7e-264 913.7 456 100.0
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 1.3e-223 779.6 459 84.1
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 9.5e-219 763.5 459 81.7
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 1.9e-214 749.2 458 80.8
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 1.9e-195 686.0 459 74.9
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 7.3e-195 684.1 460 73.9
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 1.7e-191 672.9 453 73.1
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 2.2e-191 672.5 456 72.4
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 8.4e-191 670.6 452 74.3
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 5.4e-190 667.9 454 72.2
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 9.3e-190 667.2 452 72.8
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.6e-189 666.4 454 72.0
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 6.0e-189 664.5 448 72.8
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 7.9e-189 664.1 454 73.1
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 1.8e-188 662.9 456 72.8
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 5.1e-188 661.4 432 75.5
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 8.7e-188 660.6 439 74.0
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 8.1e-186 654.1 458 72.7
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 8.1e-186 654.1 463 70.8
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 1.1e-185 653.7 430 76.3
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 3.1e-185 652.1 459 69.7
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 6.9e-185 651.0 458 71.6
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 2.2e-183 646.0 453 70.6
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 4.2e-182 641.7 450 71.1
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 3.5e-181 638.6 450 70.7
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 3.0e-180 635.6 419 74.0
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 3.3e-179 632.1 443 69.1
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 6.9e-177 624.4 458 66.4
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 7.6e-176 620.9 458 65.3
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 7.6e-176 620.9 436 67.7
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 7.6e-176 620.9 443 68.8
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 2.2e-175 619.4 442 69.0
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 2.9e-175 619.0 458 64.8
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 1.4e-174 616.7 432 67.6
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 1.9e-174 616.3 448 67.0
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 3.9e-172 608.6 446 69.3
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 5.1e-172 608.2 434 67.7
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 1.1e-171 607.1 439 67.4
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 1.9e-171 606.3 452 65.7
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 4.3e-171 605.1 432 68.8
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 4.3e-171 605.1 459 64.5
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 1.6e-170 603.2 446 65.2
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 6.3e-170 601.3 446 66.8
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 1.2e-168 597.0 441 67.6
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 1.2e-168 597.0 459 65.4
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 3.4e-168 595.5 459 65.6
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 1.0e-167 594.0 454 65.2
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 2.9e-167 592.4 444 67.1
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.4e-166 590.1 443 67.7
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.9e-166 589.7 456 64.7
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 6.1e-165 584.7 456 64.9
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.8e-164 583.2 465 65.4
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 5.1e-164 581.6 444 64.9
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 5.1e-164 581.6 444 64.9
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 1.1e-163 580.5 452 65.9
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 4.3e-163 578.6 458 64.8
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 7.4e-163 577.8 467 63.4
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 9.7e-163 577.4 450 65.3
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 6.3e-162 574.7 460 64.6
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 8.2e-162 574.3 448 65.2
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 3.1e-161 572.4 426 65.0
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 2.0e-160 569.7 449 65.3
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 2.6e-160 569.3 451 65.4
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 2.6e-160 569.3 399 70.9
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 2.9e-159 565.8 452 65.5
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 2.9e-159 565.8 432 66.0
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 2.9e-159 565.8 450 65.1
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 3.8e-159 565.5 429 66.0
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 1.9e-158 563.1 452 65.5
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 1.6e-157 560.1 441 65.8
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 2.1e-157 559.7 395 70.4
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 6.7e-156 554.7 452 64.6
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 2.6e-155 552.7 461 61.2
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 1.1e-153 547.4 485 60.8
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 1.4e-153 547.0 446 62.8
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.4e-150 537.0 458 61.6
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 1.2e-149 533.9 510 56.3
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 1.8e-148 530.0 418 62.9
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 1.3e-143 513.8 356 71.6
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.1e-142 510.8 452 61.7
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 9.1e-137 491.1 431 56.6
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 1.2e-136 490.7 329 73.3
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 1.3e-135 487.3 443 54.0
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 3.8e-135 485.7 447 56.8
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 7.2e-134 481.5 730 41.1
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 1.8e-129 466.8 437 52.9
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 5.9e-128 461.8 301 72.4
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 1.4e-124 450.7 386 62.2
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 5.2e-124 448.7 317 71.0
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 9.2e-121 438.0 312 67.6
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 5.2e-116 422.2 325 63.1
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 2.9e-114 416.4 441 47.4
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 6.2e-109 398.7 364 53.3
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 1.5e-107 394.0 318 61.9
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 9.2e-105 384.8 310 62.3
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 9.2e-105 384.8 432 49.5
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 7.8e-104 381.7 369 48.8
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 1.1e-102 377.9 317 59.9
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 8.1e-101 371.7 314 60.8
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 7.1e-97 358.6 233 76.0
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 9.2e-97 358.2 400 51.2
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 6.0e-96 355.5 402 46.5
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.1e-85 320.5 243 67.5
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 1.1e-84 318.2 352 50.9
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 9.6e-78 295.0 215 69.8
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 1.6e-77 294.3 215 66.0
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.1e-76 291.6 450 41.3
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 2.1e-69 267.3 215 63.7
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 7.6e-67 258.8 174 69.0
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 5.8e-59 232.6 208 60.1
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 2.7e-56 223.8 144 77.8
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 7.9e-48 195.7 244 45.1
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 3.3e-46 190.3 133 69.9
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.8e-44 184.5 169 55.0
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 1.1e-41 175.3 142 64.1
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 8.8e-39 165.6 136 62.5
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 4.2e-33 146.7 132 58.3
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 5.5e-33 146.4 109 64.2
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 2.1e-24 117.9 141 43.3
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 5.2e-23 113.2 402 25.6
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 2.6e-22 110.9 391 24.3
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 2.2e-21 107.8 374 25.9
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 6.3e-21 106.3 75 68.0
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 2.2e-18 97.8 135 43.0
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 3.6e-16 90.5 67 65.7
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 2.0e-11 74.7 398 22.6
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 6.1e-08 63.2 46 63.0


User provided reference genes

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