Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 1.9e-190 669.1 359 100.0
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 2.8e-165 585.5 362 87.3
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 4.9e-162 574.7 363 85.7
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 7.9e-152 540.8 361 80.9
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 5.3e-148 528.1 361 79.2
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 1.2e-147 526.9 367 78.5
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 7.2e-145 517.7 360 76.9
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 9.4e-145 517.3 359 78.3
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 2.1e-144 516.2 359 76.3
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 1.0e-143 513.8 360 78.1
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 1.8e-143 513.1 359 79.1
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.5e-142 510.0 361 75.9
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 2.5e-142 509.2 359 78.6
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 2.8e-141 505.8 316 86.1
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 1.8e-140 503.1 312 90.7
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 3.1e-140 502.3 359 74.7
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 4.1e-140 501.9 360 76.9
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 4.1e-140 501.9 327 82.9
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 5.3e-140 501.5 359 74.7
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 2.6e-139 499.2 362 77.3
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 1.0e-138 497.3 363 75.8
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 1.1e-137 493.8 329 83.3
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.9e-137 493.0 382 72.8
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 2.5e-137 492.7 348 78.2
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 4.2e-137 491.9 386 72.0
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 1.2e-136 490.3 386 71.5
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 2.7e-136 489.2 360 75.6
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 1.8e-135 486.5 359 74.9
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 2.6e-134 482.6 363 75.2
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 4.4e-134 481.9 316 82.6
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 1.3e-133 480.3 359 74.1
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 2.8e-133 479.2 360 74.7
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 3.7e-133 478.8 365 72.6
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 8.2e-133 477.6 358 72.6
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 1.1e-132 477.2 361 74.0
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 1.4e-132 476.9 361 74.0
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 2.4e-132 476.1 362 73.2
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 7.0e-132 474.6 361 71.7
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 7.0e-132 474.6 363 73.3
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 2.6e-131 472.6 361 73.7
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 2.6e-131 472.6 361 72.3
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 7.7e-131 471.1 363 73.3
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 2.9e-130 469.2 360 72.2
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 5.0e-130 468.4 337 74.5
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 6.5e-130 468.0 358 73.2
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 4.2e-129 465.3 337 74.5
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 1.2e-128 463.8 337 74.5
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 1.4e-127 460.3 263 91.6
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.4e-127 460.3 327 76.1
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.4e-127 460.3 327 76.5
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 2.3e-127 459.5 292 83.2
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 5.2e-127 458.4 327 76.1
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 2.0e-126 456.4 360 71.1
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 5.7e-126 454.9 354 70.3
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 7.4e-126 454.5 354 69.8
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 7.4e-126 454.5 298 81.9
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 9.7e-126 454.1 266 89.5
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 1.7e-125 453.4 370 71.4
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 3.7e-125 452.2 353 70.3
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 4.8e-125 451.8 265 89.8
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 1.8e-124 449.9 365 70.7
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 3.1e-124 449.1 350 71.4
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 1.6e-123 446.8 369 69.6
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 2.6e-123 446.0 365 69.9
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 2.6e-123 446.0 339 72.3
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 2.6e-123 446.0 336 73.2
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 7.7e-123 444.5 325 74.5
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 1.0e-122 444.1 362 70.4
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 3.8e-122 442.2 366 70.2
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 6.5e-122 441.4 364 68.4
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 8.5e-122 441.0 295 82.4
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 1.1e-121 440.7 304 79.6
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 3.2e-121 439.1 362 70.2
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 4.2e-121 438.7 300 79.3
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 4.2e-121 438.7 296 81.4
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 9.4e-121 437.6 366 69.4
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 2.7e-120 436.0 366 69.1
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.0e-119 434.1 282 83.7
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 1.4e-119 433.7 370 68.9
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 2.3e-119 433.0 365 68.8
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 2.3e-119 433.0 285 81.1
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 3.0e-119 432.6 287 80.8
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 2.0e-118 429.9 264 87.1
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 7.5e-118 427.9 264 86.7
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 9.1e-116 421.0 307 72.6
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 2.9e-114 416.0 402 60.2
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 1.1e-113 414.1 324 71.0
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 4.2e-113 412.1 316 72.5
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 9.4e-113 411.0 281 78.6
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 2.7e-112 409.5 394 63.2
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 8.0e-112 407.9 289 77.5
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 1.0e-111 407.5 259 84.2
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 1.8e-111 406.8 304 73.0
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 2.3e-111 406.4 394 62.9
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 1.2e-110 404.1 327 71.9
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 8.3e-109 397.9 266 80.5
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 5.9e-107 391.7 330 67.3
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 1.8e-103 380.2 269 77.0
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 2.8e-101 372.9 283 73.9
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.3e-98 364.0 223 86.5
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 2.5e-97 359.8 254 75.2
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 8.9e-95 351.3 253 73.9
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 1.7e-93 347.1 312 65.7
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 4.6e-91 339.0 195 90.3
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 1.0e-90 337.8 290 67.2
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 8.6e-90 334.7 291 64.9
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 2.6e-86 323.2 239 74.1
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 3.3e-81 306.2 259 63.7
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.1e-79 301.2 301 59.8
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 4.1e-76 289.3 247 66.8
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 5.2e-71 272.3 274 56.2
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 5.8e-70 268.9 245 61.6
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 9.0e-63 245.0 239 63.6
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 2.0e-62 243.8 270 56.3
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 6.4e-61 238.8 281 52.0
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 1.9e-57 227.3 230 62.6
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 9.6e-57 224.9 171 73.1
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 1.6e-48 197.6 139 81.3
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 2.4e-47 193.7 135 80.0
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 4.3e-41 172.9 98 91.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 2.6e-38 163.7 142 70.4
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 2.9e-37 160.2 204 54.9
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 3.0e-34 150.2 93 83.9
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 4.8e-32 142.9 157 56.1
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 1.4e-31 141.4 157 55.4
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.2e-30 138.3 112 68.8
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 2.7e-19 100.5 80 66.2
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 9.7e-17 92.0 96 59.4
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 2.4e-15 87.4 60 76.7
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 5.5e-12 76.3 225 31.6
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 2.7e-11 73.9 47 83.0
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 2.6e-06 57.4 41 73.2
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 4.5e-06 56.6 29 100.0
RcHm_v2.0_Chr5g0035691 Rosa chinensis HOM05D005990 ORTHO05D347831 4.5e-06 56.6 64 51.6


User provided reference genes

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