Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 2.0e-235 818.9 469 100.0
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 1.6e-181 639.8 452 71.5
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 2.9e-178 629.0 472 71.2
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 6.7e-159 564.7 463 61.3
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.8e-156 556.6 464 60.8
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 7.6e-155 551.2 453 61.4
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 1.3e-154 550.4 461 59.9
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 2.9e-154 549.3 464 61.2
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.6e-152 543.5 484 59.1
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.1e-152 543.1 456 60.5
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 7.9e-152 541.2 468 59.8
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 1.6e-149 533.5 467 71.7
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 1.6e-149 533.5 452 61.9
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 4.8e-149 531.9 459 67.5
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 1.4e-148 530.4 469 59.1
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 1.4e-148 530.4 467 58.5
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.9e-146 522.7 428 62.1
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.7e-144 516.2 428 61.4
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 2.5e-142 509.6 466 56.4
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 4.3e-142 508.8 467 65.5
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 7.4e-142 508.1 460 57.2
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 7.4e-142 508.1 467 65.5
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 2.8e-141 506.1 462 66.0
Sc19g0005940 Simmondsia chinensis HOM05D003177 ORTHO05D003481 4.8e-141 505.4 452 68.1
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 1.1e-140 504.2 455 67.0
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 1.8e-140 503.4 467 65.1
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 3.1e-140 502.7 457 66.5
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.9e-140 501.5 557 50.6
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 5.9e-139 498.4 454 57.7
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 2.9e-138 496.1 463 64.4
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 9.4e-137 491.1 465 54.2
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 6.1e-136 488.4 455 60.4
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 1.0e-135 487.6 467 61.7
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 7.4e-134 481.5 450 55.8
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 1.7e-133 480.3 465 61.3
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 3.7e-133 479.2 438 66.4
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 4.8e-133 478.8 468 63.9
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 4.8e-133 478.8 467 52.0
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 8.2e-133 478.0 462 55.8
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 1.4e-132 477.2 455 54.3
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 5.3e-132 475.3 451 54.3
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 7.0e-132 474.9 466 53.6
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 1.0e-130 471.1 468 62.8
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 6.5e-130 468.4 460 52.8
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 4.2e-129 465.7 493 51.9
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 2.1e-128 463.4 464 56.9
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 2.7e-128 463.0 450 60.9
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 3.6e-128 462.6 445 54.4
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 6.1e-128 461.8 468 53.8
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 6.7e-127 458.4 463 59.2
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 5.7e-126 455.3 467 60.8
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 1.3e-125 454.1 461 61.8
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 3.7e-125 452.6 459 60.3
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 8.2e-125 451.4 468 60.5
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 4.1e-124 449.1 469 52.0
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 7.7e-123 444.9 411 56.2
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 1.3e-122 444.1 466 52.8
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 3.8e-122 442.6 467 60.2
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 3.8e-122 442.6 463 50.3
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 3.8e-122 442.6 518 55.0
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 1.1e-121 441.0 465 48.6
PGSC0003DMG400019225 Solanum tuberosum HOM05D003177 ORTHO05D003481 1.6e-120 437.2 421 58.2
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 4.7e-120 435.6 460 49.1
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 6.8e-119 431.8 463 53.3
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 8.8e-119 431.4 471 50.1
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 5.7e-118 428.7 461 50.1
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 6.3e-117 425.2 461 54.2
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 8.3e-117 424.9 461 57.3
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 1.1e-116 424.5 467 47.1
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 4.1e-116 422.5 465 55.1
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 4.1e-116 422.5 457 47.5
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 5.3e-116 422.2 444 57.2
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 1.6e-115 420.6 457 47.9
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 4.5e-115 419.1 457 48.6
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 5.9e-115 418.7 462 46.8
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 5.9e-115 418.7 462 47.4
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 7.7e-115 418.3 464 47.6
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 6.5e-114 415.2 468 55.1
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 1.5e-113 414.1 466 47.2
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 1.9e-113 413.7 462 47.8
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 3.2e-113 412.9 464 45.7
Ciclev10008545m.g Citrus clementina HOM05D003177 ORTHO05D003481 5.5e-113 412.1 377 66.0
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 9.4e-113 411.4 482 44.8
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 1.6e-112 410.6 462 55.6
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 1.6e-112 410.6 477 47.2
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 2.7e-112 409.8 453 49.0
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 3.6e-112 409.5 462 46.3
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 1.8e-111 407.1 473 46.5
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 1.8e-111 407.1 473 46.5
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 2.3e-111 406.8 462 55.4
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 8.8e-111 404.8 469 55.4
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.5e-110 404.1 462 55.0
Lj1C863T22 Lonicera japonica HOM05D003177 ORTHO05D003481 3.4e-110 402.9 292 70.9
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 4.4e-110 402.5 483 45.5
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 9.8e-110 401.4 467 46.5
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 5.9e-107 392.1 339 72.9
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 1.7e-106 390.6 414 58.2
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 2.9e-106 389.8 391 64.7
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 8.6e-106 388.3 478 44.4
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 2.5e-105 386.7 387 52.7
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 5.2e-103 379.0 471 44.6
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 6.8e-103 378.6 387 52.2
CDE12G0546 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 8.9e-103 378.3 464 45.0
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 4.4e-102 375.9 411 46.7
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 1.3e-101 374.4 392 52.8
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 6.3e-101 372.1 395 56.7
Glyma.13G287400 Glycine max HOM05D003177 ORTHO05D003481 3.5e-99 366.3 390 52.6
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 1.2e-94 351.3 467 48.8
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 1.4e-92 344.4 454 52.2
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 4.1e-92 342.8 404 47.5
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 5.4e-92 342.4 404 47.5
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 7.0e-92 342.0 404 47.5
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.6e-91 340.9 405 46.7
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 1.0e-90 338.2 441 41.3
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 1.2e-88 331.3 342 51.2
CsaV3_UNG229000 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.2e-88 331.3 332 54.8
RcHm_v2.0_Chr5g0037561 Rosa chinensis HOM05D003177 ORTHO05D003481 5.8e-86 322.4 250 66.4
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 6.6e-82 308.9 450 50.0
Actinidia35317 Actinidia chinensis HOM05D003177 ORTHO05D003481 4.3e-81 306.2 466 41.0
Glyma.12G135500 Glycine max HOM05D003177 ORTHO05D003481 5.6e-81 305.8 265 60.8
Eucgr.G00523 Eucalyptus grandis HOM05D003177 ORTHO05D003481 5.2e-79 299.3 284 58.1
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 6.0e-75 285.8 318 48.7
VMungo1127G0069 Vigna mungo HOM05D003177 ORTHO05D003481 8.6e-74 282.0 259 58.7
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 2.1e-72 277.3 247 60.3
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 2.9e-61 240.4 450 35.1
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 5.1e-58 229.6 474 33.3
arahy.Tifrunner.gnm1.ann1.P5VPT7 Arachis hypogaea HOM05D003177 ORTHO05D003481 4.5e-54 216.5 236 50.0
Hma1.2p1_1546F.1_g289990 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 4.5e-54 216.5 198 58.1
Medtr4g133410 Medicago truncatula HOM05D003177 ORTHO05D003481 4.2e-52 209.9 448 33.5
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 3.8e-45 186.8 428 33.9
arahy.Tifrunner.gnm1.ann1.BRX1G6 Arachis hypogaea HOM05D003177 ORTHO05D003481 7.1e-44 182.6 197 50.3
Medtr5g034890 Medicago truncatula HOM05D003177 ORTHO05D003481 1.1e-39 168.7 530 27.7
FvH4_3g43180 Fragaria vesca HOM05D003177 ORTHO05D003481 2.2e-37 161.0 113 68.1
FAN21G1934 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.5e-37 159.5 113 67.3
Potri.011G133100 Populus trichocarpa HOM05D003177 ORTHO05D003481 6.5e-37 159.5 209 60.8
RcHm_v2.0_Chr5g0037541 Rosa chinensis HOM05D003177 ORTHO05D003481 6.5e-37 159.5 107 72.9
FvH4_3g43110 Fragaria vesca HOM05D003177 ORTHO05D003481 8.4e-37 159.1 113 67.3
FvH4_3g42340 Fragaria vesca HOM05D003177 ORTHO05D003481 3.5e-35 153.7 120 63.3
FvH4_3g42560 Fragaria vesca HOM05D003177 ORTHO05D003481 3.9e-34 150.2 120 62.5
FAN11G2904 Fragaria x ananassa HOM05D003177 ORTHO05D003481 5.1e-34 149.8 121 62.0
CsaV3_UNG228990 Cucumis sativus L. HOM05D003177 ORTHO05D003481 6.7e-34 149.4 120 56.7
FAN11G0078 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.7e-34 149.4 120 62.5
Phvul.005G091800 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 5.7e-33 146.4 120 59.2
Eucgr.H00088 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.3e-32 145.2 139 56.8
FAN28G1104 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.3e-32 142.9 121 59.5
AUR62020553 Chenopodium quinoa HOM05D003177 ORTHO05D003481 4.1e-31 140.2 120 57.5
SEGI_25291 Sequoiadendron giganteum HOM05D003177 ORTHO05D003481 9.0e-31 139.0 182 41.2
CSS0025638 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 2.0e-30 137.9 128 58.6
VMungo1127G0088 Vigna mungo HOM05D003177 ORTHO05D003481 4.5e-30 136.7 179 41.9
Medtr8g070020 Medicago truncatula HOM05D003177 ORTHO05D003481 5.9e-30 136.3 330 30.9
arahy.Tifrunner.gnm1.ann1.C6RLDL Arachis hypogaea HOM05D003177 ORTHO05D003481 2.2e-29 134.4 114 60.5
ECA240G3581 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.8e-29 133.7 186 39.8
arahy.Tifrunner.gnm1.ann1.LTHE3G Arachis hypogaea HOM05D003177 ORTHO05D003481 4.6e-27 126.7 120 52.5
Glyma.U031131 Glycine max HOM05D003177 ORTHO05D003481 4.6e-27 126.7 121 53.7
arahy.Tifrunner.gnm1.ann1.PSAJ1X Arachis hypogaea HOM05D003177 ORTHO05D003481 8.2e-24 115.9 108 55.6
ECA240G2036 Erigeron canadensis HOM05D003177 ORTHO05D003481 4.1e-23 113.6 205 29.8
TPR.G36746 Trifolium pratense HOM05D003177 ORTHO05D003481 4.1e-23 113.6 168 44.0
TPR.G36748 Trifolium pratense HOM05D003177 ORTHO05D003481 4.1e-23 113.6 114 48.2
FAN11G0113 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.6e-22 110.9 75 69.3
arahy.Tifrunner.gnm1.ann1.4630L6 Arachis hypogaea HOM05D003177 ORTHO05D003481 7.7e-22 109.4 196 38.8
Medtr2g082940 Medicago truncatula HOM05D003177 ORTHO05D003481 1.0e-21 109.0 142 44.4
CARHR054770 Cardamine hirsuta HOM05D003177 ORTHO05D003481 2.5e-20 104.4 124 43.5
Lju3590A0T11 Lonicera japonica HOM05D003177 ORTHO05D003481 3.2e-20 104.0 87 57.5
Duzib213G0184 Durio zibethinus HOM05D003177 ORTHO05D003481 6.1e-19 99.8 73 63.0
Psat5g251840 Pisum sativum HOM05D003177 ORTHO05D003481 6.1e-19 99.8 119 46.2
CAN.G337.89 Capsicum annuum HOM05D003177 ORTHO05D003481 1.0e-18 99.0 119 46.2
Sabra16G0283700 Salix brachista HOM05D003177 ORTHO05D003481 1.0e-18 99.0 75 61.3
Ca_01752_v3 Cicer arietinum L. HOM05D003177 ORTHO05D003481 6.7e-18 96.3 234 34.6
Lj1A863T65 Lonicera japonica HOM05D003177 ORTHO05D003481 8.8e-18 95.9 75 61.3
DCAR_015959 Daucus carota HOM05D003177 ORTHO05D003481 5.7e-17 93.2 141 41.8
Glyma.12G135400 Glycine max HOM05D003177 ORTHO05D003481 1.7e-16 91.7 145 51.7
RcHm_v2.0_Chr5g0037551 Rosa chinensis HOM05D003177 ORTHO05D003481 2.8e-16 90.9 56 73.2
Nitab4.5_0000743g0080 Nicotiana tabacum HOM05D003177 ORTHO05D003481 8.2e-16 89.4 120 36.7
DCAR_032350 Daucus carota HOM05D003177 ORTHO05D003481 1.4e-15 88.6 108 49.1
Pp3c12_4690 Physcomitrium patens HOM05D015612 ORTHO05D003481 1.4e-15 88.6 228 27.2
SMO170G0018 Selaginella moellendorffii HOM05D003177 ORTHO05D003481 6.5e-13 79.7 430 27.9
Medtr7g025525 Medicago truncatula HOM05D003177 ORTHO05D003481 4.2e-12 77.0 68 52.9
VMungo1080G1398 Vigna mungo HOM05D003177 ORTHO05D003481 2.7e-11 74.3 58 62.1
Pp3c10_3690 Physcomitrium patens HOM05D015612 ORTHO05D003481 2.3e-10 71.2 186 27.4
AagrBONN_evm.TU.Sc2ySwM_369.261 Anthoceros agrestis HOM05D015612 ORTHO05D003481 5.7e-09 66.6 206 24.3
Lju3590A0T10 Lonicera japonica HOM05D003177 ORTHO05D003481 1.4e-07 62.0 201 28.9
SMO147G0336 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 9.1e-07 59.3 170 25.9
AL1G67350 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 2.7e-06 57.8 119 31.1
Eucgr.J00432 Eucalyptus grandis HOM05D003177 ORTHO05D003481 5.9e-06 56.6 58 53.4


User provided reference genes

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