Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p013313 Quercus lobata HOM05D003177 ORTHO05D003481 3.6e-220 768.1 419 100.0
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 1.3e-137 493.8 418 65.3
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 1.3e-132 477.2 422 61.8
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 1.1e-125 454.1 424 61.6
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 4.5e-122 442.2 417 58.8
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 9.3e-112 407.9 422 54.7
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 6.7e-110 401.7 413 53.8
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 6.7e-110 401.7 422 53.1
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 1.5e-109 400.6 419 54.2
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 6.9e-107 391.7 416 57.7
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 2.0e-106 390.2 418 53.1
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 4.5e-106 389.0 418 52.6
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 3.6e-103 379.4 422 51.9
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 6.1e-103 378.6 418 53.3
Duzib213G0184 Durio zibethinus HOM05D003177 ORTHO05D003481 8.7e-102 374.8 416 52.9
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 1.4e-99 367.5 418 51.0
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 1.8e-99 367.1 429 50.1
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 4.2e-96 355.9 308 59.1
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 1.8e-94 350.5 430 49.1
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.8e-94 350.5 378 50.5
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 1.1e-93 347.8 419 48.0
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 7.4e-93 345.1 415 48.0
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 4.8e-92 342.4 338 56.8
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 8.2e-92 341.7 436 51.1
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 8.2e-92 341.7 415 48.4
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 1.8e-91 340.5 415 46.7
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 2.0e-90 337.0 414 45.4
CsaV3_UNG228980 Cucumis sativus L. HOM05D003177 ORTHO05D003481 8.5e-89 331.6 356 50.6
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 1.1e-88 331.3 340 52.4
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 1.4e-88 330.9 362 49.7
Potri.011G133100 Populus trichocarpa HOM05D003177 ORTHO05D003481 9.4e-88 328.2 418 46.7
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 1.4e-86 324.3 376 49.5
Sabra16G0283700 Salix brachista HOM05D003177 ORTHO05D003481 6.7e-86 322.0 323 51.7
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 5.7e-85 318.9 377 47.7
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 7.4e-85 318.5 281 55.2
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 7.4e-85 318.5 430 47.2
RcHm_v2.0_Chr5g0037541 Rosa chinensis HOM05D003177 ORTHO05D003481 6.3e-84 315.5 311 56.3
Ciclev10008519m.g Citrus clementina HOM05D003177 ORTHO05D003481 8.2e-84 315.1 405 46.4
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 1.4e-83 314.3 325 49.8
Ciclev10008319m.g Citrus clementina HOM05D003177 ORTHO05D003481 2.0e-82 310.5 405 45.9
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.0e-81 308.1 305 52.8
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 1.0e-81 308.1 342 48.5
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 1.7e-81 307.4 415 43.6
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 2.2e-81 307.0 385 47.3
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 3.8e-81 306.2 415 43.4
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 5.0e-81 305.8 281 53.4
VMungo1080G1398 Vigna mungo HOM05D003177 ORTHO05D003481 5.0e-81 305.8 372 46.5
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 9.4e-80 301.6 370 45.4
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 1.6e-79 300.8 281 50.9
Medtr2g082940 Medicago truncatula HOM05D003177 ORTHO05D003481 1.4e-78 297.7 337 47.5
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 1.8e-78 297.4 323 49.8
Ca_01752_v3 Cicer arietinum L. HOM05D003177 ORTHO05D003481 3.3e-77 293.1 298 50.0
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 1.3e-76 291.2 424 40.6
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 2.2e-76 290.4 369 45.5
TPR.G36746 Trifolium pratense HOM05D003177 ORTHO05D003481 3.7e-76 289.7 335 46.9
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 6.3e-76 288.9 359 45.7
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 8.2e-76 288.5 298 53.4
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 1.1e-75 288.1 315 52.4
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 1.4e-75 287.7 418 41.6
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.8e-75 287.3 335 46.3
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.1e-75 286.6 335 46.3
VMungo1127G0088 Vigna mungo HOM05D003177 ORTHO05D003481 3.1e-75 286.6 295 50.8
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 4.1e-75 286.2 363 44.9
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 9.1e-75 285.0 335 46.0
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 1.6e-74 284.3 418 40.7
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 2.0e-74 283.9 385 43.6
Psat5g251840 Pisum sativum HOM05D003177 ORTHO05D003481 2.7e-74 283.5 337 44.2
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.0e-73 281.6 315 51.7
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.8e-73 279.6 349 47.9
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.5e-72 277.7 335 50.4
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 1.5e-72 277.7 228 61.0
Sc19g0005960 Simmondsia chinensis HOM05D003177 ORTHO05D003481 1.5e-72 277.7 337 49.6
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 1.9e-72 277.3 335 45.1
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 1.9e-72 277.3 316 47.2
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 4.2e-72 276.2 281 50.9
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 7.2e-72 275.4 335 49.9
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 7.2e-72 275.4 302 51.7
arahy.Tifrunner.gnm1.ann1.2UU78P Arachis hypogaea HOM05D003177 ORTHO05D003481 9.4e-72 275.0 358 43.6
arahy.Tifrunner.gnm1.ann1.JSI4TH Arachis hypogaea HOM05D003177 ORTHO05D003481 1.6e-71 274.2 349 44.4
CAN.G337.89 Capsicum annuum HOM05D003177 ORTHO05D003481 4.7e-71 272.7 420 40.0
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.1e-71 272.3 303 50.5
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 1.4e-70 271.2 416 40.9
arahy.Tifrunner.gnm1.ann1.LTHE3G Arachis hypogaea HOM05D003177 ORTHO05D003481 4.0e-70 269.6 335 44.2
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.0e-70 269.6 303 50.5
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 8.8e-70 268.5 366 41.3
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 1.2e-69 268.1 343 42.3
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 5.7e-69 265.8 343 42.0
AUR62020553 Chenopodium quinoa HOM05D003177 ORTHO05D003481 1.7e-68 264.2 420 40.5
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 4.8e-68 262.7 188 72.3
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.4e-67 261.2 423 39.5
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 9.1e-67 258.5 282 46.8
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 2.0e-66 257.3 434 38.7
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 2.9e-65 253.4 297 48.1
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 6.5e-65 252.3 346 42.2
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 1.9e-64 250.8 268 48.1
Cpa.g.sc97.66 Carica papaya HOM05D003177 ORTHO05D003481 9.5e-64 248.4 336 47.0
Os02g0132600 Oryza sativa ssp. japonica HOM05D003177 ORTHO05D003481 6.1e-63 245.7 383 38.4
SHI50408 Sapria himalayana HOM05D003177 ORTHO05D003481 8.0e-63 245.4 272 48.2
Hma1.2p1_1546F.1_g289980 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 1.0e-62 245.0 208 58.2
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 1.4e-62 244.6 257 49.8
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 3.4e-61 240.0 349 41.0
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 2.2e-60 237.3 342 42.1
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 6.3e-60 235.7 267 45.7
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 2.9e-57 226.9 343 37.9
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 4.3e-56 223.0 273 47.6
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 1.6e-55 221.1 309 40.8
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 1.6e-55 221.1 310 41.9
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 2.8e-55 220.3 274 46.4
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 3.6e-55 219.9 274 47.1
CDE12G0466 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 2.3e-54 217.2 205 51.7
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 5.2e-54 216.1 274 45.3
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 7.5e-53 212.2 356 41.0
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 4.9e-52 209.5 314 42.4
PSO478G2228 Papaver somniferum HOM05D003177 ORTHO05D003481 6.4e-52 209.1 235 48.1
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 4.1e-51 206.5 258 45.3
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 2.0e-50 204.1 321 39.6
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 2.7e-50 203.8 352 38.9
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 6.0e-50 202.6 337 39.2
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 6.0e-50 202.6 337 39.2
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 1.3e-49 201.4 357 38.7
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 1.7e-49 201.1 260 44.2
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 1.7e-49 201.1 260 44.2
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 2.3e-49 200.7 257 44.4
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 3.9e-49 199.9 260 44.2
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.5e-48 198.0 363 38.6
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 1.9e-48 197.6 366 36.9
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 4.3e-48 196.4 316 40.8
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 5.6e-48 196.1 320 40.9
Phvul.005G091800 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 1.2e-47 194.9 346 37.6
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 2.1e-47 194.1 370 37.0
FAN21G2694 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.6e-47 193.4 264 43.9
Medtr4g081210 Medicago truncatula HOM05D003177 ORTHO05D003481 3.6e-47 193.4 251 45.4
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 4.7e-47 193.0 363 37.7
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 1.8e-46 191.0 255 43.9
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 8.9e-46 188.7 347 36.9
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 9.8e-45 185.3 270 38.5
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 1.2e-39 168.3 287 36.2
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 1.6e-39 167.9 150 60.7
FvH4_3g43180 Fragaria vesca HOM05D003177 ORTHO05D003481 1.2e-37 161.8 210 45.7
FvH4_3g43110 Fragaria vesca HOM05D003177 ORTHO05D003481 2.0e-37 161.0 209 44.0
FAN21G1934 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.4e-37 159.8 210 45.2
Glyma.U031231 Glycine max HOM05D003177 ORTHO05D003481 2.4e-35 154.1 194 43.3
FvH4_3g42340 Fragaria vesca HOM05D003177 ORTHO05D003481 1.1e-27 128.6 214 37.4
BcaC09g51195 Brassica carinata HOM05D003177 ORTHO05D003481 1.4e-27 128.3 232 36.6
FAN11G0113 Fragaria x ananassa HOM05D003177 ORTHO05D003481 9.2e-27 125.6 290 31.7
FvH4_3g42560 Fragaria vesca HOM05D003177 ORTHO05D003481 1.2e-26 125.2 325 30.2
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 1.2e-26 125.2 167 45.5
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 1.6e-26 124.8 361 31.3
FAN28G1104 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.1e-26 124.4 302 30.8
SEGI_03301 Sequoiadendron giganteum HOM05D003177 ORTHO05D003481 2.1e-26 124.4 252 30.2
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 2.7e-26 124.0 185 43.2
FAN11G2904 Fragaria x ananassa HOM05D003177 ORTHO05D003481 7.8e-26 122.5 222 35.1
AL1G67350 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 6.6e-25 119.4 205 39.0
Glyma.U031131 Glycine max HOM05D003177 ORTHO05D003481 6.6e-25 119.4 117 52.1
AL1G67370 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 7.3e-24 115.9 234 34.6
FAN16G1316 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.8e-22 111.3 174 35.1
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 9.3e-19 99.0 93 55.9
FvH4_3g41772 Fragaria vesca HOM05D003177 ORTHO05D003481 9.6e-16 89.0 197 29.4
unitig_26.g9968 Utricularia gibba HOM05D003177 ORTHO05D003481 1.8e-14 84.7 129 38.8
Glyma.13G287400 Glycine max HOM05D003177 ORTHO05D003481 4.5e-13 80.1 74 56.8
Sc19g0005950 Simmondsia chinensis HOM05D003177 ORTHO05D003481 5.1e-09 66.6 64 56.2
CARHR228590 Cardamine hirsuta HOM05D003177 ORTHO05D003481 3.3e-08 63.9 88 37.5


User provided reference genes

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