Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p010320 Quercus lobata HOM05D006187 ORTHO05D007621 3.7e-151 538.1 257 100.0
Prupe.4G212700 Prunus persica HOM05D006187 ORTHO05D007621 1.6e-85 320.1 202 78.7
MD11G1218600 Malus domestica HOM05D006187 ORTHO05D007621 2.7e-85 319.3 202 78.7
CiPaw.11G189300 Carya illinoinensis HOM05D006187 ORTHO05D007621 7.8e-85 317.8 186 85.5
CiPaw.12G129700 Carya illinoinensis HOM05D006187 ORTHO05D007621 5.6e-83 311.6 186 83.3
COL.COLO4_09662 Corchorus olitorius HOM05D006187 ORTHO05D007621 1.6e-82 310.1 197 77.7
Haze_09689 Corylus avellana HOM05D006187 ORTHO05D007621 4.7e-82 308.5 197 77.2
RcHm_v2.0_Chr5g0039431 Rosa chinensis HOM05D006187 ORTHO05D007621 6.2e-82 308.1 196 77.6
Gohir.D01G066500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 4.0e-81 305.4 187 80.7
Nn1g03532 Nelumbo nucifera HOM05D006187 ORTHO05D007621 4.0e-81 305.4 197 75.6
Gorai.002G088500 Gossypium raimondii HOM05D006187 ORTHO05D007621 5.2e-81 305.1 187 80.7
TAR626G1058 Trochodendron aralioides HOM05D006187 ORTHO05D007621 5.2e-81 305.1 197 76.1
Lalb_Chr17g0348481 Lupinus albus HOM05D006187 ORTHO05D007621 6.8e-81 304.7 193 79.3
PGR083G2749 Punica granatum HOM05D006187 ORTHO05D007621 8.9e-81 304.3 197 76.1
Ciclev10009486m.g Citrus clementina HOM05D006187 ORTHO05D007621 1.2e-80 303.9 187 80.2
Lalb_Chr10g0106971 Lupinus albus HOM05D006187 ORTHO05D007621 1.2e-80 303.9 203 74.9
arahy.Tifrunner.gnm1.ann1.KHU2SV Arachis hypogaea HOM05D006187 ORTHO05D007621 1.5e-80 303.5 197 76.6
arahy.Tifrunner.gnm1.ann1.YIAG1Z Arachis hypogaea HOM05D006187 ORTHO05D007621 1.5e-80 303.5 197 76.6
Sed0017183 Sechium edule HOM05D006187 ORTHO05D007621 2.6e-80 302.8 197 74.1
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 3.4e-80 302.4 197 75.1
Thecc.07G036900 Theobroma cacao HOM05D006187 ORTHO05D007621 3.4e-80 302.4 197 75.6
CANSAT11G0252 Cannabis sativa HOM05D006187 ORTHO05D007621 4.4e-80 302.0 203 74.4
Gohir.A01G079500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 4.4e-80 302.0 187 79.7
MSTRG.26280 Avicennia marina HOM05D006187 ORTHO05D007621 5.8e-80 301.6 197 75.6
Eucgr.F00764 Eucalyptus grandis HOM05D006187 ORTHO05D007621 5.8e-80 301.6 187 80.2
Cfa020345 Carpinus fangiana HOM05D006187 ORTHO05D007621 7.5e-80 301.2 197 75.1
Dinv40753 Davidia involucrata HOM05D006187 ORTHO05D007621 7.5e-80 301.2 196 74.5
FvH4_3g22670 Fragaria vesca HOM05D006187 ORTHO05D007621 7.5e-80 301.2 196 76.0
Potri.001G435500 Populus trichocarpa HOM05D006187 ORTHO05D007621 2.2e-79 299.7 197 75.1
LjContig00272g0005891 Lotus japonicus HOM05D006187 ORTHO05D007621 3.7e-79 298.9 197 74.1
Aqoxy1G03401 Aquilegia oxysepala HOM05D006187 ORTHO05D007621 6.4e-79 298.1 203 72.4
Cc05_g13690 Coffea canephora HOM05D006187 ORTHO05D007621 6.4e-79 298.1 187 79.1
DCAR_022562 Daucus carota HOM05D006187 ORTHO05D007621 6.4e-79 298.1 197 73.6
Manes.15G071900 Manihot esculenta HOM05D006187 ORTHO05D007621 1.1e-78 297.4 197 75.1
AUR62020447 Chenopodium quinoa HOM05D006187 ORTHO05D007621 1.4e-78 297.0 185 78.9
VMungo0647G0583 Vigna mungo HOM05D006187 ORTHO05D007621 1.4e-78 297.0 197 74.6
Duzib170G0579 Durio zibethinus HOM05D006187 ORTHO05D007621 1.9e-78 296.6 197 75.1
Potri.011G139500 Populus trichocarpa HOM05D006187 ORTHO05D007621 1.9e-78 296.6 197 74.6
RhsimUnG0250600 Rhododendron simsii HOM05D006187 ORTHO05D007621 1.9e-78 296.6 197 73.6
Medtr5g092720 Medicago truncatula HOM05D006187 ORTHO05D007621 2.4e-78 296.2 204 72.1
Phvul.008G266900 Phaseolus vulgaris HOM05D006187 ORTHO05D007621 2.4e-78 296.2 197 74.6
Sc16g0006050 Simmondsia chinensis HOM05D006187 ORTHO05D007621 2.4e-78 296.2 185 77.8
TWI39G1048 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 2.4e-78 296.2 197 72.1
MELO3C013167.2 Cucumis melo HOM05D006187 ORTHO05D007621 4.1e-78 295.4 187 76.5
ECA246G0646 Erigeron canadensis HOM05D006187 ORTHO05D007621 9.2e-78 294.3 197 74.1
vmacro09715 Vaccinium macrocarpon HOM05D006187 ORTHO05D007621 9.2e-78 294.3 197 75.1
PSO210G0259 Papaver somniferum HOM05D006187 ORTHO05D007621 1.2e-77 293.9 197 72.6
Peaxi162Scf00964g00021 Petunia axillaris HOM05D006187 ORTHO05D007621 1.2e-77 293.9 197 73.6
THA.LOC104816937 Tarenaya hassleriana HOM05D006187 ORTHO05D007621 1.2e-77 293.9 197 73.6
Ah.06g186030 Amaranthus hybridus HOM05D006187 ORTHO05D007621 2.7e-77 292.7 185 76.2
Migut.K00331 Erythranthe guttata HOM05D006187 ORTHO05D007621 2.7e-77 292.7 166 83.7
CAN.G337.132 Capsicum annuum HOM05D006187 ORTHO05D007621 3.5e-77 292.4 197 72.6
Ca_06320_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 1.0e-76 290.8 197 73.6
Ca_30809_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 1.0e-76 290.8 197 73.6
CsaV3_7G021800 Cucumis sativus L. HOM05D006187 ORTHO05D007621 1.0e-76 290.8 187 75.4
PSO832G1277 Papaver somniferum HOM05D006187 ORTHO05D007621 1.0e-76 290.8 197 71.6
AUR62015764 Chenopodium quinoa HOM05D006187 ORTHO05D007621 1.3e-76 290.4 185 76.8
Oeu005532.1 Olea europaea HOM05D006187 ORTHO05D007621 1.7e-76 290.0 197 72.1
EL10Ac4g07806 Beta vulgaris HOM05D006187 ORTHO05D007621 2.3e-76 289.7 197 73.1
Solyc07g064590.3 Solanum lycopersicum HOM05D006187 ORTHO05D007621 2.3e-76 289.7 197 72.1
CSS0049447 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 3.0e-76 289.3 196 72.4
FAN16G3112 Fragaria x ananassa HOM05D006187 ORTHO05D007621 3.0e-76 289.3 208 71.2
PGSC0003DMG400022319 Solanum tuberosum HOM05D006187 ORTHO05D007621 3.0e-76 289.3 197 71.6
Lsat_1_v5_gn_5_3960 Lactuca sativa HOM05D006187 ORTHO05D007621 3.9e-76 288.9 199 72.4
FAN11G0395 Fragaria x ananassa HOM05D006187 ORTHO05D007621 6.6e-76 288.1 175 82.3
Psat2g010920 Pisum sativum HOM05D006187 ORTHO05D007621 8.6e-76 287.7 187 75.9
FAN25G1478 Fragaria x ananassa HOM05D006187 ORTHO05D007621 1.5e-75 287.0 175 81.7
TPR.G1184 Trifolium pratense HOM05D006187 ORTHO05D007621 1.5e-75 287.0 187 76.5
Sopen07g032780 Solanum pennellii HOM05D006187 ORTHO05D007621 2.5e-75 286.2 197 71.1
HPP92_016292 Vanilla planifolia HOM05D006187 ORTHO05D007621 3.3e-75 285.8 197 72.1
CSS0042680 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 5.6e-75 285.0 191 74.3
SalBow5G2755 Salvia bowleyana HOM05D006187 ORTHO05D007621 7.3e-75 284.6 213 68.5
Aa31LG10G3660 Aethionema arabicum HOM05D006187 ORTHO05D007621 9.5e-75 284.3 197 71.1
ATR0794G016 Amborella trichopoda HOM05D006187 ORTHO05D007621 1.2e-74 283.9 196 69.4
GSVIVG01037647001 Vitis vinifera HOM05D006187 ORTHO05D007621 2.1e-74 283.1 203 69.5
FAN21G2137 Fragaria x ananassa HOM05D006187 ORTHO05D007621 1.1e-73 280.8 227 65.6
A06p02950 Brassica napus HOM05D006187 ORTHO05D007621 1.4e-73 280.4 197 69.0
CARHR040720 Cardamine hirsuta HOM05D006187 ORTHO05D007621 4.0e-73 278.9 197 69.0
unitig_746.g26546 Utricularia gibba HOM05D006187 ORTHO05D007621 5.2e-73 278.5 197 69.5
Zm00001eb207490 Zea mays HOM05D006187 ORTHO05D007621 5.2e-73 278.5 190 72.6
AL1G58340 Arabidopsis lyrata HOM05D006187 ORTHO05D007621 2.0e-72 276.6 197 68.0
C06p05930 Brassica napus HOM05D006187 ORTHO05D007621 3.4e-72 275.8 197 68.5
BcaC08g43245 Brassica carinata HOM05D006187 ORTHO05D007621 4.4e-72 275.4 197 68.5
AT1G50670 Arabidopsis thaliana HOM05D006187 ORTHO05D007621 5.8e-72 275.0 197 67.5
BraA06t23501Z Brassica rapa HOM05D006187 ORTHO05D007621 9.9e-72 274.2 198 68.7
SGA_v2.0_scaffold347G49550 Striga asiatica HOM05D006187 ORTHO05D007621 9.9e-72 274.2 196 67.9
BcaB07g33507 Brassica carinata HOM05D006187 ORTHO05D007621 1.7e-71 273.5 197 68.0
Carub.0001s3971 Capsella rubella HOM05D006187 ORTHO05D007621 2.2e-71 273.1 197 68.0
BolC6t35706H Brassica oleracea HOM05D006187 ORTHO05D007621 3.8e-71 272.3 165 79.4
Thhalv10011780m.g Eutrema salsugineum HOM05D006187 ORTHO05D007621 3.8e-71 272.3 197 68.0
Sp1g37520 Schrenkiella parvula HOM05D006187 ORTHO05D007621 6.4e-71 271.6 197 67.0
CDE05G0514 Ceratophyllum demersum HOM05D006187 ORTHO05D007621 1.1e-70 270.8 190 69.5
Lj1A872G52 Lonicera japonica HOM05D006187 ORTHO05D007621 1.4e-70 270.4 151 86.1
SEGI_20110 Sequoiadendron giganteum HOM05D006187 ORTHO05D007621 1.3e-68 263.8 190 70.0
Oeu062696.2 Olea europaea HOM05D006187 ORTHO05D007621 2.3e-68 263.1 231 60.2
TWI38G1854 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 6.6e-68 261.5 171 74.3
Glyma.02G291000 Glycine max HOM05D006187 ORTHO05D007621 9.6e-67 257.7 171 75.4
Glyma.14G023700 Glycine max HOM05D006187 ORTHO05D007621 9.6e-67 257.7 173 74.0
HanXRQChr05g0159371 Helianthus annuus HOM05D006187 ORTHO05D007621 1.2e-66 257.3 175 73.1
ClCG09G010800 Citrullus lanatus HOM05D006187 ORTHO05D007621 1.6e-66 256.9 187 69.0
Sabra11G0125500 Salix brachista HOM05D006187 ORTHO05D007621 2.4e-65 253.1 276 51.4
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 4.0e-65 252.3 197 65.0
SMO201G0052 Selaginella moellendorffii HOM05D006187 ORTHO05D007621 8.9e-65 251.1 186 65.1
HanXRQChr08g0233871 Helianthus annuus HOM05D006187 ORTHO05D007621 2.6e-64 249.6 175 70.9
Pp3c26_11120 Physcomitrium patens HOM05D006187 ORTHO05D007621 1.7e-63 246.9 186 66.1
SHI26611 Sapria himalayana HOM05D006187 ORTHO05D007621 2.2e-63 246.5 163 71.2
Mapoly0105s0022 Marchantia polymorpha HOM05D006187 ORTHO05D007621 2.9e-63 246.1 187 65.2
AagrBONN_evm.TU.Sc2ySwM_344.4367 Anthoceros agrestis HOM05D004720 ORTHO05D007621 3.5e-61 239.2 189 63.5
CBR_g54108 Chara braunii HOM05D006187 ORTHO05D007621 8.7e-60 234.6 185 63.2
PSO675G5262 Papaver somniferum HOM05D006187 ORTHO05D007621 2.0e-56 223.4 197 56.3
Nitab4.5_0011129g0020 Nicotiana tabacum HOM05D006187 ORTHO05D007621 1.3e-55 220.7 148 75.7
Cpa.g.sc97.3 Carica papaya HOM05D006187 ORTHO05D007621 5.1e-52 208.8 150 72.0
Cre09.g409050 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 2.4e-46 189.9 137 64.2
MCO07G461 Micromonas commoda HOM05D006187 ORTHO05D007621 1.8e-44 183.7 137 63.5
Hma1.2p1_0673F.1_g201350 Hydrangea macrophylla HOM05D006187 ORTHO05D007621 8.2e-42 174.9 197 49.7
PSO541G4439 Papaver somniferum HOM05D006187 ORTHO05D007621 1.2e-40 171.0 193 47.7
PRCOL_00006206 Prasinoderma coloniale HOM05D006187 ORTHO05D007621 3.8e-39 166.0 163 52.1
MBI18_g14476_MAGBIO Magnolia biondii HOM05D006187 ORTHO05D007621 1.1e-38 164.5 149 61.7
HPP92_016312 Vanilla planifolia HOM05D006187 ORTHO05D007621 1.1e-35 154.5 124 64.5
Prupe.4G233700 Prunus persica HOM05D006187 ORTHO05D007621 1.5e-35 154.1 168 52.4
Cre06.g274700 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 3.7e-34 149.4 136 51.5
Haze_26155 Corylus avellana HOM05D006187 ORTHO05D007621 7.6e-32 141.7 190 38.9
HPP92_016311 Vanilla planifolia HOM05D006187 ORTHO05D007621 5.7e-27 125.6 74 78.4
PSO675G9324 Papaver somniferum HOM05D006187 ORTHO05D007621 6.9e-25 118.6 124 50.8
Cfa025770 Carpinus fangiana HOM05D006187 ORTHO05D007621 5.1e-20 102.4 184 34.8
AUR62015776 Chenopodium quinoa HOM05D006187 ORTHO05D007621 3.3e-19 99.8 83 63.9
Nitab4.5_0001913g0160 Nicotiana tabacum HOM05D006187 ORTHO05D007621 3.7e-10 69.7 72 51.4
Os02g0164800 Oryza sativa ssp. japonica HOM05D006187 ORTHO05D007621 4.1e-09 66.2 72 47.2


User provided reference genes

Program Settings