Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p010315 Quercus lobata HOM05D006187 ORTHO05D007621 8.0e-109 397.1 203 100.0
LjContig00272g0005891 Lotus japonicus HOM05D006187 ORTHO05D007621 1.4e-17 94.0 43 100.0
arahy.Tifrunner.gnm1.ann1.KHU2SV Arachis hypogaea HOM05D006187 ORTHO05D007621 1.9e-17 93.6 43 97.7
arahy.Tifrunner.gnm1.ann1.YIAG1Z Arachis hypogaea HOM05D006187 ORTHO05D007621 1.9e-17 93.6 43 97.7
CiPaw.11G189300 Carya illinoinensis HOM05D006187 ORTHO05D007621 3.2e-17 92.8 43 97.7
Gohir.D01G066500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 3.2e-17 92.8 43 97.7
Gorai.002G088500 Gossypium raimondii HOM05D006187 ORTHO05D007621 3.2e-17 92.8 43 97.7
Ca_06320_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 5.5e-17 92.0 43 97.7
Ca_30809_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 5.5e-17 92.0 43 97.7
Psat2g010920 Pisum sativum HOM05D006187 ORTHO05D007621 9.4e-17 91.3 43 95.3
PGR083G2749 Punica granatum HOM05D006187 ORTHO05D007621 9.4e-17 91.3 43 95.3
TPR.G1184 Trifolium pratense HOM05D006187 ORTHO05D007621 1.2e-16 90.9 43 95.3
CAN.G337.132 Capsicum annuum HOM05D006187 ORTHO05D007621 1.6e-16 90.5 43 95.3
Cfa020345 Carpinus fangiana HOM05D006187 ORTHO05D007621 1.6e-16 90.5 43 95.3
COL.COLO4_09662 Corchorus olitorius HOM05D006187 ORTHO05D007621 1.6e-16 90.5 43 95.3
Haze_09689 Corylus avellana HOM05D006187 ORTHO05D007621 1.6e-16 90.5 43 95.3
Gohir.A01G079500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 1.6e-16 90.5 43 95.3
RhsimUnG0250600 Rhododendron simsii HOM05D006187 ORTHO05D007621 1.6e-16 90.5 43 95.3
TWI39G1048 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 1.6e-16 90.5 43 95.3
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 2.1e-16 90.1 43 93.0
ClCG09G010800 Citrullus lanatus HOM05D006187 ORTHO05D007621 2.1e-16 90.1 43 95.3
CsaV3_7G021800 Cucumis sativus L. HOM05D006187 ORTHO05D007621 2.1e-16 90.1 43 95.3
Manes.15G071900 Manihot esculenta HOM05D006187 ORTHO05D007621 2.1e-16 90.1 43 93.0
Os02g0164800 Oryza sativa ssp. japonica HOM05D006187 ORTHO05D007621 2.1e-16 90.1 45 91.1
Sed0017183 Sechium edule HOM05D006187 ORTHO05D007621 2.1e-16 90.1 43 95.3
Carub.0001s3971 Capsella rubella HOM05D006187 ORTHO05D007621 2.7e-16 89.7 61 73.8
Cc05_g13690 Coffea canephora HOM05D006187 ORTHO05D007621 2.7e-16 89.7 43 95.3
Thhalv10011780m.g Eutrema salsugineum HOM05D006187 ORTHO05D007621 2.7e-16 89.7 61 73.8
Sabra11G0125500 Salix brachista HOM05D006187 ORTHO05D007621 2.7e-16 89.7 60 75.0
GSVIVG01037647001 Vitis vinifera HOM05D006187 ORTHO05D007621 2.7e-16 89.7 43 93.0
Aa31LG10G3660 Aethionema arabicum HOM05D006187 ORTHO05D007621 3.6e-16 89.4 43 93.0
AL1G58340 Arabidopsis lyrata HOM05D006187 ORTHO05D007621 3.6e-16 89.4 43 93.0
AT1G50670 Arabidopsis thaliana HOM05D006187 ORTHO05D007621 3.6e-16 89.4 43 93.0
CSS0049447 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 3.6e-16 89.4 43 93.0
CARHR040720 Cardamine hirsuta HOM05D006187 ORTHO05D007621 3.6e-16 89.4 43 93.0
Ciclev10009486m.g Citrus clementina HOM05D006187 ORTHO05D007621 3.6e-16 89.4 43 93.0
HanXRQChr08g0233871 Helianthus annuus HOM05D006187 ORTHO05D007621 3.6e-16 89.4 43 93.0
Oeu005532.1 Olea europaea HOM05D006187 ORTHO05D007621 3.6e-16 89.4 43 93.0
Potri.001G435500 Populus trichocarpa HOM05D006187 ORTHO05D007621 3.6e-16 89.4 43 93.0
Solyc07g064590.3 Solanum lycopersicum HOM05D006187 ORTHO05D007621 3.6e-16 89.4 43 93.0
Sopen07g032780 Solanum pennellii HOM05D006187 ORTHO05D007621 3.6e-16 89.4 43 93.0
PGSC0003DMG400022319 Solanum tuberosum HOM05D006187 ORTHO05D007621 3.6e-16 89.4 43 93.0
THA.LOC104816937 Tarenaya hassleriana HOM05D006187 ORTHO05D007621 3.6e-16 89.4 43 93.0
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 4.6e-16 89.0 43 90.7
Duzib170G0579 Durio zibethinus HOM05D006187 ORTHO05D007621 4.6e-16 89.0 43 90.7
FAN11G0395 Fragaria x ananassa HOM05D006187 ORTHO05D007621 4.6e-16 89.0 56 78.6
Hma1.2p1_0673F.1_g201350 Hydrangea macrophylla HOM05D006187 ORTHO05D007621 4.6e-16 89.0 43 93.0
MD11G1218600 Malus domestica HOM05D006187 ORTHO05D007621 4.6e-16 89.0 43 88.4
Peaxi162Scf00964g00021 Petunia axillaris HOM05D006187 ORTHO05D007621 4.6e-16 89.0 43 90.7
Potri.011G139500 Populus trichocarpa HOM05D006187 ORTHO05D007621 4.6e-16 89.0 43 93.0
Prupe.4G212700 Prunus persica HOM05D006187 ORTHO05D007621 4.6e-16 89.0 43 88.4
Thecc.07G036900 Theobroma cacao HOM05D006187 ORTHO05D007621 4.6e-16 89.0 43 90.7
TWI38G1854 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 4.6e-16 89.0 43 93.0
MSTRG.26280 Avicennia marina HOM05D006187 ORTHO05D007621 6.1e-16 88.6 43 90.7
BcaB07g33507 Brassica carinata HOM05D006187 ORTHO05D007621 6.1e-16 88.6 42 95.2
BcaC08g43245 Brassica carinata HOM05D006187 ORTHO05D007621 6.1e-16 88.6 42 95.2
A06p02950 Brassica napus HOM05D006187 ORTHO05D007621 6.1e-16 88.6 42 95.2
C06p05930 Brassica napus HOM05D006187 ORTHO05D007621 6.1e-16 88.6 42 95.2
BraA06t23501Z Brassica rapa HOM05D006187 ORTHO05D007621 6.1e-16 88.6 42 95.2
Sp1g37520 Schrenkiella parvula HOM05D006187 ORTHO05D007621 6.1e-16 88.6 42 95.2
CiPaw.12G129700 Carya illinoinensis HOM05D006187 ORTHO05D007621 7.9e-16 88.2 43 88.4
FAN25G1478 Fragaria x ananassa HOM05D006187 ORTHO05D007621 7.9e-16 88.2 56 73.2
Glyma.02G291000 Glycine max HOM05D006187 ORTHO05D007621 7.9e-16 88.2 43 90.7
Glyma.14G023700 Glycine max HOM05D006187 ORTHO05D007621 7.9e-16 88.2 43 90.7
PSO210G0259 Papaver somniferum HOM05D006187 ORTHO05D007621 7.9e-16 88.2 43 90.7
PSO832G1277 Papaver somniferum HOM05D006187 ORTHO05D007621 7.9e-16 88.2 43 90.7
HanXRQChr05g0159371 Helianthus annuus HOM05D006187 ORTHO05D007621 1.0e-15 87.8 43 90.7
Zm00001eb207490 Zea mays HOM05D006187 ORTHO05D007621 1.0e-15 87.8 43 90.7
FvH4_3g22670 Fragaria vesca HOM05D006187 ORTHO05D007621 1.4e-15 87.4 57 71.9
FAN16G3112 Fragaria x ananassa HOM05D006187 ORTHO05D007621 1.4e-15 87.4 57 71.9
Nitab4.5_0001913g0160 Nicotiana tabacum HOM05D006187 ORTHO05D007621 1.4e-15 87.4 43 88.4
Nitab4.5_0011129g0020 Nicotiana tabacum HOM05D006187 ORTHO05D007621 1.4e-15 87.4 43 88.4
SalBow5G2755 Salvia bowleyana HOM05D006187 ORTHO05D007621 1.4e-15 87.4 43 88.4
Aqoxy1G03401 Aquilegia oxysepala HOM05D006187 ORTHO05D007621 1.8e-15 87.0 43 88.4
DCAR_022562 Daucus carota HOM05D006187 ORTHO05D007621 1.8e-15 87.0 43 88.4
Nn1g03532 Nelumbo nucifera HOM05D006187 ORTHO05D007621 1.8e-15 87.0 43 88.4
RcHm_v2.0_Chr5g0039431 Rosa chinensis HOM05D006187 ORTHO05D007621 1.8e-15 87.0 43 86.0
ECA246G0646 Erigeron canadensis HOM05D006187 ORTHO05D007621 2.3e-15 86.7 43 88.4
Lalb_Chr10g0106971 Lupinus albus HOM05D006187 ORTHO05D007621 2.3e-15 86.7 43 88.4
Oeu062696.2 Olea europaea HOM05D006187 ORTHO05D007621 2.3e-15 86.7 43 88.4
Phvul.008G266900 Phaseolus vulgaris HOM05D006187 ORTHO05D007621 2.3e-15 86.7 43 88.4
TAR626G1058 Trochodendron aralioides HOM05D006187 ORTHO05D007621 2.3e-15 86.7 43 90.7
unitig_746.g26546 Utricularia gibba HOM05D006187 ORTHO05D007621 2.3e-15 86.7 43 88.4
ATR0794G016 Amborella trichopoda HOM05D006187 ORTHO05D007621 3.0e-15 86.3 57 68.4
Eucgr.F00764 Eucalyptus grandis HOM05D006187 ORTHO05D007621 3.0e-15 86.3 43 88.4
VMungo0647G0583 Vigna mungo HOM05D006187 ORTHO05D007621 3.0e-15 86.3 43 86.0
SGA_v2.0_scaffold347G49550 Striga asiatica HOM05D006187 ORTHO05D007621 3.9e-15 85.9 43 88.4
Dinv40753 Davidia involucrata HOM05D006187 ORTHO05D007621 5.1e-15 85.5 43 88.4
FAN21G2137 Fragaria x ananassa HOM05D006187 ORTHO05D007621 6.7e-15 85.1 57 70.2
AUR62015764 Chenopodium quinoa HOM05D006187 ORTHO05D007621 8.8e-15 84.7 41 92.7
AUR62020447 Chenopodium quinoa HOM05D006187 ORTHO05D007621 8.8e-15 84.7 41 92.7
CANSAT11G0252 Cannabis sativa HOM05D006187 ORTHO05D007621 2.0e-14 83.6 43 86.0
HPP92_016292 Vanilla planifolia HOM05D006187 ORTHO05D007621 2.5e-14 83.2 43 83.7
HPP92_016312 Vanilla planifolia HOM05D006187 ORTHO05D007621 2.5e-14 83.2 43 83.7
Ah.06g186030 Amaranthus hybridus HOM05D006187 ORTHO05D007621 3.3e-14 82.8 43 81.4
EL10Ac4g07806 Beta vulgaris HOM05D006187 ORTHO05D007621 7.4e-14 81.6 43 81.4
Mapoly0105s0022 Marchantia polymorpha HOM05D006187 ORTHO05D007621 9.7e-14 81.3 42 83.3
CSS0042680 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 2.2e-13 80.1 43 81.4
Migut.K00331 Erythranthe guttata HOM05D006187 ORTHO05D007621 3.7e-13 79.3 43 81.4
CDE05G0514 Ceratophyllum demersum HOM05D006187 ORTHO05D007621 6.3e-13 78.6 43 79.1
SMO201G0052 Selaginella moellendorffii HOM05D006187 ORTHO05D007621 6.3e-13 78.6 42 78.6
Cre09.g409050 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 8.2e-13 78.2 41 82.9
Pp3c26_11120 Physcomitrium patens HOM05D006187 ORTHO05D007621 1.4e-12 77.4 41 80.5
SEGI_20110 Sequoiadendron giganteum HOM05D006187 ORTHO05D007621 1.8e-12 77.0 44 77.3
Sc16g0006050 Simmondsia chinensis HOM05D006187 ORTHO05D007621 2.0e-11 73.6 43 81.4
MCO07G461 Micromonas commoda HOM05D006187 ORTHO05D007621 7.7e-11 71.6 41 75.6
AagrBONN_evm.TU.Sc2ySwM_344.4367 Anthoceros agrestis HOM05D004720 ORTHO05D007621 1.1e-09 67.8 41 63.4
PRCOL_00006206 Prasinoderma coloniale HOM05D006187 ORTHO05D007621 6.1e-08 62.0 41 63.4
Medtr5g092720 Medicago truncatula HOM05D006187 ORTHO05D007621 2.0e-06 57.0 25 100.0
MELO3C013167.2 Cucumis melo HOM05D006187 ORTHO05D007621 9.7e-06 54.7 24 95.8


User provided reference genes

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