Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p008309 Quercus lobata HOM05D000399 ORTHO05D000304 1.1e-60 236.5 120 100.0
QL08p008239 Quercus lobata HOM05D000399 ORTHO05D000304 2.4e-20 102.4 102 58.8
QL08p006916 Quercus lobata HOM05D000399 ORTHO05D000304 9.1e-20 100.5 100 56.0
QL09p024256 Quercus lobata HOM05D000399 ORTHO05D000304 9.1e-20 100.5 100 56.0
QL08p008192 Quercus lobata HOM05D000399 ORTHO05D000304 2.7e-19 99.0 89 59.6
QL08p006924 Quercus lobata HOM05D000399 ORTHO05D000304 7.7e-19 97.4 101 51.5
QL09p024268 Quercus lobata HOM05D000399 ORTHO05D000304 7.7e-19 97.4 101 51.5
Potri.011G086700 Populus trichocarpa HOM05D000399 ORTHO05D000304 2.2e-18 95.9 89 56.2
CiPaw.12G132200 Carya illinoinensis HOM05D000399 ORTHO05D000304 3.8e-18 95.1 89 56.2
ClCG10G005250 Citrullus lanatus HOM05D000399 ORTHO05D000304 2.5e-17 92.4 101 50.5
Nn1g03450 Nelumbo nucifera HOM05D000399 ORTHO05D000304 2.5e-17 92.4 89 52.8
Haze_09717 Corylus avellana HOM05D000399 ORTHO05D000304 3.2e-17 92.0 88 55.7
Thecc.07G031500 Theobroma cacao HOM05D000399 ORTHO05D000304 4.2e-17 91.7 101 51.5
CANSAT01G2756 Cannabis sativa HOM05D000399 ORTHO05D000304 5.5e-17 91.3 101 49.5
Cfa020304 Carpinus fangiana HOM05D000399 ORTHO05D000304 5.5e-17 91.3 88 54.5
Ciclev10008694m.g Citrus clementina HOM05D000399 ORTHO05D000304 8.0e-16 87.4 88 53.4
QL08p008278 Quercus lobata HOM05D000399 ORTHO05D000304 8.0e-16 87.4 91 58.2
Atru.chr2.3497 Acer truncatum HOM05D000399 ORTHO05D000304 1.0e-15 87.0 101 47.5
MELO3C014194.2 Cucumis melo HOM05D000399 ORTHO05D000304 1.4e-15 86.7 101 48.5
Duzib213G0551 Durio zibethinus HOM05D000399 ORTHO05D000304 1.4e-15 86.7 89 51.7
Sed0023956 Sechium edule HOM05D000399 ORTHO05D000304 1.8e-15 86.3 95 52.6
RcHm_v2.0_Chr5g0040931 Rosa chinensis HOM05D000399 ORTHO05D000304 4.0e-15 85.1 97 49.5
CsaV3_3G004960 Cucumis sativus L. HOM05D000399 ORTHO05D000304 5.2e-15 84.7 101 47.5
CsaV3_4G013380 Cucumis sativus L. HOM05D000399 ORTHO05D000304 5.2e-15 84.7 101 47.5
Manes.15G068000 Manihot esculenta HOM05D000399 ORTHO05D000304 5.2e-15 84.7 88 54.5
TAR624G0323 Trochodendron aralioides HOM05D000399 ORTHO05D000304 6.8e-15 84.3 89 50.6
Ca_06337_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 8.8e-15 84.0 86 53.5
MD03G1196200 Malus domestica HOM05D000399 ORTHO05D000304 8.8e-15 84.0 93 50.5
Medtr8g058930 Medicago truncatula HOM05D000399 ORTHO05D000304 1.2e-14 83.6 86 51.2
GSVIVG01037698001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.5e-14 83.2 93 51.6
Gohir.D05G373200 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.4e-14 82.0 89 50.6
Gorai.009G441900 Gossypium raimondii HOM05D000399 ORTHO05D000304 3.4e-14 82.0 89 50.6
MD11G1212500 Malus domestica HOM05D000399 ORTHO05D000304 3.4e-14 82.0 93 48.4
COL.COLO4_09700 Corchorus olitorius HOM05D001348 ORTHO05D000304 4.4e-14 81.6 89 51.7
MELO3C014193.2 Cucumis melo HOM05D000399 ORTHO05D000304 4.4e-14 81.6 89 51.7
Sc07g0002840 Simmondsia chinensis HOM05D000399 ORTHO05D000304 5.7e-14 81.3 84 51.2
TAR626G0927 Trochodendron aralioides HOM05D000399 ORTHO05D000304 7.5e-14 80.9 81 53.1
Dinv40784 Davidia involucrata HOM05D000399 ORTHO05D000304 9.8e-14 80.5 81 54.3
Lalb_Chr04g0248271 Lupinus albus HOM05D000399 ORTHO05D000304 9.8e-14 80.5 88 48.9
TPR.G13409 Trifolium pratense HOM05D000399 ORTHO05D000304 9.8e-14 80.5 89 48.3
TPR.G17891 Trifolium pratense HOM05D001608 ORTHO05D002070 9.8e-14 80.5 90 47.8
TWI39G0857 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 9.8e-14 80.5 102 47.1
Migut.M01731 Erythranthe guttata HOM05D000399 ORTHO05D000304 1.3e-13 80.1 81 51.9
MBI10_g29392_MAGBIO Magnolia biondii HOM05D000399 ORTHO05D000304 1.3e-13 80.1 98 50.0
Eucgr.F00717 Eucalyptus grandis HOM05D000399 ORTHO05D000304 1.7e-13 79.7 86 51.2
Gohir.A04G012700 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.7e-13 79.7 81 54.3
FAN11G3687 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.8e-13 79.0 97 46.4
Psat2g012440 Pisum sativum HOM05D000399 ORTHO05D000304 2.8e-13 79.0 86 48.8
Prupe.4G219200 Prunus persica HOM05D000399 ORTHO05D000304 2.8e-13 79.0 89 49.4
TPR.G1198 Trifolium pratense HOM05D000399 ORTHO05D000304 2.8e-13 79.0 87 48.3
FvH4_3g23250 Fragaria vesca HOM05D000399 ORTHO05D000304 3.7e-13 78.6 97 46.4
Medtr3g096700 Medicago truncatula HOM05D000399 ORTHO05D000304 3.7e-13 78.6 90 44.4
Actinidia35365 Actinidia chinensis HOM05D000399 ORTHO05D000304 4.8e-13 78.2 81 51.9
FAN25G1948 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.8e-13 78.2 97 46.4
LjContig00272g0000787 Lotus japonicus HOM05D000399 ORTHO05D000304 4.8e-13 78.2 88 46.6
PGR083G1485 Punica granatum HOM05D000399 ORTHO05D000304 4.8e-13 78.2 98 43.9
CSS0004286 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 6.3e-13 77.8 81 51.9
FAN25G2496 Fragaria x ananassa HOM05D000399 ORTHO05D000304 8.3e-13 77.4 97 45.4
FAN16G0322 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.4e-12 76.6 97 44.3
Lj5g0016531 Lotus japonicus HOM05D000399 ORTHO05D000304 1.4e-12 76.6 88 45.5
CSS0028681 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.4e-12 75.9 81 50.6
MSTRG.6943 Avicennia marina HOM05D000399 ORTHO05D000304 3.1e-12 75.5 101 42.6
Lj1C878T5 Lonicera japonica HOM05D000399 ORTHO05D000304 4.1e-12 75.1 93 46.2
SGA_v2.0_scaffold36G14385 Striga asiatica HOM05D000399 ORTHO05D000304 4.1e-12 75.1 81 53.1
THA.LOC104817859 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 4.1e-12 75.1 97 44.3
Phvul.008G269800 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 7.0e-12 74.3 89 43.8
arahy.Tifrunner.gnm1.ann1.7RWM6D Arachis hypogaea HOM05D000399 ORTHO05D000304 9.1e-12 73.9 88 46.6
Oeu005523.2 Olea europaea HOM05D000399 ORTHO05D000304 9.1e-12 73.9 93 44.1
VMungo0647G2567 Vigna mungo HOM05D000399 ORTHO05D000304 9.1e-12 73.9 87 44.8
PSO541G6031 Papaver somniferum HOM05D000399 ORTHO05D000304 1.2e-11 73.6 90 50.0
Sed0015579 Sechium edule HOM05D000399 ORTHO05D000304 1.2e-11 73.6 89 46.1
CsaV3_3G004950 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.6e-11 73.2 89 46.1
Lsat_1_v5_gn_7_114480 Lactuca sativa HOM05D000399 ORTHO05D000304 1.6e-11 73.2 81 45.7
TPR.G10756 Trifolium pratense HOM05D000399 ORTHO05D000304 1.6e-11 73.2 87 46.0
Hund23862 Selenicereus undatus HOM05D000399 ORTHO05D000304 2.0e-11 72.8 98 45.9
AT3G20420 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 2.7e-11 72.4 111 41.4
Cc05_g14090 Coffea canephora HOM05D000399 ORTHO05D000304 2.7e-11 72.4 81 49.4
Lsat_1_v5_gn_3_14921 Lactuca sativa HOM05D000399 ORTHO05D000304 2.7e-11 72.4 81 46.9
TAR629G3020 Trochodendron aralioides HOM05D000399 ORTHO05D000304 2.7e-11 72.4 81 48.1
Cpa.g.sc12.267 Carica papaya HOM05D000399 ORTHO05D000304 3.5e-11 72.0 78 52.6
PSO675G6810 Papaver somniferum HOM05D000399 ORTHO05D000304 3.5e-11 72.0 90 50.0
Glyma.14G021600 Glycine max HOM05D000399 ORTHO05D000304 5.9e-11 71.2 99 39.4
Nitab4.5_0005265g0030 Nicotiana tabacum HOM05D000399 ORTHO05D000304 5.9e-11 71.2 81 45.7
RcHm_v2.0_Chr5g0040941 Rosa chinensis HOM05D000399 ORTHO05D000304 7.7e-11 70.9 89 44.9
arahy.Tifrunner.gnm1.ann1.U657KI Arachis hypogaea HOM05D000399 ORTHO05D000304 1.0e-10 70.5 88 44.3
AUR62015826 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.0e-10 70.5 90 45.6
AUR62020392 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.0e-10 70.5 90 45.6
Nitab4.5_0000981g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.0e-10 70.5 81 44.4
AL3G34140 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 1.3e-10 70.1 111 39.6
Rhsim13G0151000 Rhododendron simsii HOM05D000399 ORTHO05D000304 1.3e-10 70.1 81 48.1
Hund23225 Selenicereus undatus HOM05D000399 ORTHO05D000304 1.3e-10 70.1 98 44.9
CDE11G1088 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 1.7e-10 69.7 89 41.6
Prupe.4G219400 Prunus persica HOM05D000399 ORTHO05D000304 1.7e-10 69.7 88 47.7
vmacro09696 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 1.7e-10 69.7 81 48.1
EL10Ac4g07760 Beta vulgaris HOM05D000399 ORTHO05D000304 2.3e-10 69.3 82 50.0
Eucgr.F00718 Eucalyptus grandis HOM05D000399 ORTHO05D000304 2.3e-10 69.3 89 44.9
Thhalv10020929m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 2.9e-10 68.9 98 39.8
VMungo1309G1448 Vigna mungo HOM05D000399 ORTHO05D000304 2.9e-10 68.9 95 41.1
HanXRQChr17g0546431 Helianthus annuus HOM05D000399 ORTHO05D000304 3.8e-10 68.6 82 41.5
HPP92_005298 Vanilla planifolia HOM05D000399 ORTHO05D000304 3.8e-10 68.6 93 43.0
DCAR_016850 Daucus carota HOM05D000399 ORTHO05D000304 5.0e-10 68.2 78 46.2
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 6.6e-10 67.8 83 44.6
BcaC01g01692 Brassica carinata HOM05D000399 ORTHO05D000304 8.6e-10 67.4 78 46.2
BcaC05g28326 Brassica carinata HOM05D000399 ORTHO05D000304 8.6e-10 67.4 78 46.2
C05p43940 Brassica napus HOM05D000399 ORTHO05D000304 8.6e-10 67.4 78 46.2
BolC5t33112H Brassica oleracea HOM05D000399 ORTHO05D000304 8.6e-10 67.4 78 46.2
CsaV3_4G013400 Cucumis sativus L. HOM05D000399 ORTHO05D000304 8.6e-10 67.4 89 43.8
HanXRQChr17g0546441 Helianthus annuus HOM05D000399 ORTHO05D000304 8.6e-10 67.4 81 39.5
Ah.03g148780 Amaranthus hybridus HOM05D000399 ORTHO05D000304 1.1e-09 67.0 82 47.6
Carub.0003s2036 Capsella rubella HOM05D000399 ORTHO05D000304 1.1e-09 67.0 101 39.6
CARHR096130 Cardamine hirsuta HOM05D000399 ORTHO05D000304 1.1e-09 67.0 93 40.9
PGSC0003DMG400012864 Solanum tuberosum HOM05D000399 ORTHO05D000304 1.1e-09 67.0 82 43.9
QL01p000915 Quercus lobata HOM05D000399 ORTHO05D000304 1.9e-09 66.2 70 51.4
PGSC0003DMG400014420 Solanum tuberosum HOM05D000399 ORTHO05D000304 2.5e-09 65.9 81 40.7
ECA236G2771 Erigeron canadensis HOM05D000399 ORTHO05D000304 3.3e-09 65.5 86 44.2
Sp3g18430 Schrenkiella parvula HOM05D000399 ORTHO05D000304 3.3e-09 65.5 86 39.5
CAN.G952.2 Capsicum annuum HOM05D000399 ORTHO05D000304 4.2e-09 65.1 81 43.2
ECA248G1950 Erigeron canadensis HOM05D000399 ORTHO05D000304 4.2e-09 65.1 86 44.2
HPP92_008857 Vanilla planifolia HOM05D000399 ORTHO05D000304 5.5e-09 64.7 86 39.5
AUR62020393 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.2e-08 63.5 82 46.3
Peaxi162Scf00339g00079 Petunia axillaris HOM05D000399 ORTHO05D000304 1.2e-08 63.5 81 48.1
Sopen12g007270 Solanum pennellii HOM05D000399 ORTHO05D000304 1.2e-08 63.5 88 43.2
A05p28480 Brassica napus HOM05D000399 ORTHO05D000304 1.6e-08 63.2 78 44.9
BraA05t21727Z Brassica rapa HOM05D000399 ORTHO05D000304 1.6e-08 63.2 78 44.9
SalBow8G1530 Salvia bowleyana HOM05D000399 ORTHO05D000304 2.1e-08 62.8 81 45.7
Solyc12g014410.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.1e-08 62.8 88 42.0
RhsimUnG0248400 Rhododendron simsii HOM05D000399 ORTHO05D000304 1.0e-07 60.5 93 40.9
CAN.G492.19 Capsicum annuum HOM05D000399 ORTHO05D000304 1.4e-07 60.1 82 35.4
DCAR_030339 Daucus carota HOM05D000399 ORTHO05D000304 6.8e-07 57.8 74 41.9
Carub.0008s0303 Capsella rubella HOM05D000399 ORTHO05D000304 8.9e-07 57.4 90 38.9
Aa31LG8G7230 Aethionema arabicum HOM05D000399 ORTHO05D000304 1.2e-06 57.0 98 33.7
EL10Ac4g07761 Beta vulgaris HOM05D000399 ORTHO05D000304 1.5e-06 56.6 76 46.1
BcaB06g26107 Brassica carinata HOM05D000399 ORTHO05D000304 1.5e-06 56.6 86 36.0
Aqoxy4G01902 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 2.0e-06 56.2 80 40.0
MD03G1196100 Malus domestica HOM05D000399 ORTHO05D000304 3.4e-06 55.5 87 40.2
AL8G14050 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 5.7e-06 54.7 90 35.6
MD11G1212400 Malus domestica HOM05D000399 ORTHO05D000304 5.7e-06 54.7 97 41.2
SGA_v2.0_scaffold23G10212 Striga asiatica HOM05D000399 ORTHO05D000304 7.5e-06 54.3 71 47.9
Os05g0271300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 9.8e-06 53.9 77 40.3


User provided reference genes

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