Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 3.5e-210 734.9 441 100.0
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 3.1e-158 562.4 448 78.3
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.0e-145 520.8 454 73.1
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 1.4e-145 520.4 442 70.1
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 1.6e-141 506.9 443 68.4
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 1.1e-139 500.7 453 66.7
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 5.5e-139 498.4 455 64.4
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 4.4e-136 488.8 443 67.9
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 2.2e-135 486.5 443 66.8
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.8e-135 486.1 453 69.5
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 8.5e-132 474.6 453 66.2
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.5e-131 473.0 442 69.7
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.5e-131 471.9 494 62.3
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 9.4e-131 471.1 452 62.4
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.6e-130 470.3 493 60.4
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 2.7e-130 469.5 493 61.1
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 1.4e-129 467.2 445 65.6
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 4.0e-129 465.7 494 59.9
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.2e-129 465.3 494 59.9
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 2.6e-128 463.0 452 63.3
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 2.2e-127 459.9 501 59.9
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.8e-127 459.5 443 60.9
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 3.7e-127 459.1 493 61.1
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 8.3e-127 458.0 448 60.3
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 1.6e-125 453.8 477 64.2
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 7.7e-125 451.4 452 66.2
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.0e-124 451.1 493 61.1
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 5.0e-124 448.7 475 56.8
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 6.6e-124 448.4 449 66.1
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 1.9e-123 446.8 508 57.7
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 4.2e-123 445.7 482 62.4
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 9.5e-123 444.5 471 57.1
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.2e-122 444.1 471 57.1
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.1e-122 443.4 441 58.7
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 3.6e-122 442.6 450 60.9
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.3e-121 439.9 450 59.3
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 3.0e-121 439.5 457 59.3
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.0e-120 436.8 471 56.5
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 7.5e-120 434.9 444 61.9
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 9.8e-120 434.5 480 55.4
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.3e-119 434.1 449 61.5
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 1.7e-119 433.7 461 56.6
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 2.2e-119 433.3 453 57.6
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.2e-119 433.3 443 62.1
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 4.9e-119 432.2 490 55.5
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.8e-118 430.3 456 55.7
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 2.4e-118 429.9 512 56.2
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 7.0e-118 428.3 449 64.6
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.2e-117 427.6 483 54.0
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 1.2e-117 427.6 460 60.9
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.5e-117 425.6 452 62.8
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 4.5e-117 425.6 451 63.2
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 5.9e-117 425.2 455 62.4
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 7.8e-117 424.9 491 54.4
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 6.6e-116 421.8 489 57.7
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.5e-115 420.6 457 57.1
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.9e-115 420.2 451 63.0
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 1.9e-115 420.2 475 61.7
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 3.3e-115 419.5 502 54.0
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 3.6e-114 416.0 453 61.1
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 4.7e-114 415.6 520 55.0
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.7e-111 407.1 450 62.7
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.4e-110 404.1 447 57.3
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.4e-110 404.1 447 64.4
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 3.2e-110 402.9 444 64.6
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 9.2e-110 401.4 455 54.7
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 2.7e-109 399.8 459 56.6
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 6.0e-109 398.7 450 57.6
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.0e-108 397.9 451 59.6
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 1.3e-108 397.5 439 55.1
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.7e-108 397.1 473 56.4
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 2.3e-108 396.7 452 53.3
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 1.6e-106 390.6 501 49.5
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 3.6e-106 389.4 461 55.1
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 5.2e-105 385.6 520 49.2
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.5e-104 384.0 463 62.9
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 3.4e-104 382.9 503 48.9
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 4.4e-104 382.5 448 52.5
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 9.8e-104 381.3 459 52.9
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 3.7e-103 379.4 459 56.6
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 1.1e-102 377.9 497 56.3
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.4e-102 377.5 472 51.9
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 3.5e-101 372.9 519 57.2
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 1.0e-100 371.3 459 55.8
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.3e-100 370.9 468 53.8
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 8.6e-100 368.2 458 52.2
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 3.3e-99 366.3 458 54.8
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 3.3e-99 366.3 465 54.6
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 9.5e-99 364.8 444 52.0
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 2.1e-98 363.6 454 55.7
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 2.8e-98 363.2 458 51.7
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 3.6e-98 362.8 453 58.7
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 1.5e-96 357.5 427 60.2
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 2.2e-95 353.6 453 60.5
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 2.9e-95 353.2 443 52.6
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 3.7e-95 352.8 435 55.4
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 5.4e-94 349.0 471 51.8
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 2.7e-93 346.7 415 54.9
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.6e-93 345.9 439 52.8
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.2e-90 337.8 478 48.7
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 1.1e-89 334.7 499 48.9
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 4.4e-88 329.3 487 44.8
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 1.3e-87 327.8 198 84.3
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 4.2e-86 322.8 456 54.4
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 2.1e-85 320.5 494 45.5
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 1.7e-84 317.4 496 45.6
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 9.6e-83 311.6 460 46.1
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 1.1e-78 298.1 164 90.2
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 2.1e-77 293.9 440 48.4
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.0e-76 291.6 408 48.0
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 3.9e-76 289.7 498 42.2
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 3.6e-74 283.1 435 46.4
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.1e-73 281.6 499 51.3
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 4.0e-73 279.6 192 77.6
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 7.6e-72 275.4 405 45.9
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 9.9e-72 275.0 167 83.2
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 3.8e-71 273.1 457 43.3
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 1.8e-68 264.2 469 43.3
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 1.1e-67 261.5 390 48.2
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 6.9e-57 225.7 128 86.7
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.2e-56 224.9 379 44.6
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 7.6e-56 222.2 328 45.4
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 2.5e-54 217.2 386 45.1
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 6.3e-50 202.6 166 66.3
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.9e-46 191.0 388 39.2
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 4.2e-46 189.9 492 34.1
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 2.2e-39 167.5 158 55.7
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.8e-36 157.9 425 40.9
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 4.4e-35 153.3 411 33.6
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 1.7e-34 151.4 165 51.5
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 4.2e-30 136.7 147 47.6
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 4.8e-26 123.2 65 93.8
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.8e-25 121.3 94 69.1
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.7e-23 114.8 73 79.5
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 8.0e-21 105.9 106 56.6
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 2.2e-18 97.8 97 57.7
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 7.7e-16 89.4 161 42.2
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 1.0e-15 89.0 107 48.6
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.0e-15 89.0 107 48.6
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 1.2e-13 82.0 204 32.8
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 6.1e-13 79.7 49 79.6
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 8.0e-13 79.3 55 67.3
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 1.4e-12 78.6 415 28.0
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 1.4e-12 78.6 415 28.0
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 1.3e-07 62.0 160 38.1


User provided reference genes

Program Settings