Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 3.6e-132 474.9 240 100.0
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 8.8e-107 390.6 240 82.5
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 8.8e-107 390.6 243 82.3
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 1.3e-105 386.7 240 82.1
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 1.2e-103 380.2 243 78.6
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 4.5e-103 378.3 243 78.2
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 4.0e-99 365.2 243 76.1
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 4.0e-99 365.2 243 76.1
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 5.2e-99 364.8 243 76.1
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 8.8e-99 364.0 243 76.5
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 9.8e-98 360.5 243 76.5
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 1.3e-97 360.1 240 77.1
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 2.2e-97 359.4 243 76.1
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 3.7e-97 358.6 243 76.5
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 8.3e-97 357.5 212 81.6
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 1.1e-96 357.1 212 82.5
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 5.4e-96 354.8 242 74.8
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 7.0e-96 354.4 243 76.5
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 7.0e-96 354.4 240 75.0
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 2.0e-95 352.8 246 75.6
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 2.7e-95 352.4 240 75.4
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 3.5e-95 352.1 241 74.7
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 4.5e-95 351.7 241 74.3
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 1.0e-94 350.5 245 75.9
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 1.3e-94 350.1 243 74.5
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 2.9e-94 349.0 240 72.5
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 2.9e-94 349.0 208 80.3
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 6.6e-94 347.8 242 72.7
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 8.6e-94 347.4 244 73.8
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 1.5e-93 346.7 243 73.7
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 1.9e-93 346.3 240 73.3
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 4.3e-93 345.1 241 73.9
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 2.8e-92 342.4 239 72.0
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 3.6e-92 342.0 244 74.2
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 8.0e-92 340.9 246 71.1
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 3.0e-91 339.0 246 69.5
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 3.0e-91 339.0 240 70.4
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 4.0e-91 338.6 245 73.1
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 4.0e-91 338.6 236 70.8
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 5.2e-91 338.2 251 68.9
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 5.2e-91 338.2 227 75.3
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 5.2e-91 338.2 246 73.6
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.0e-90 336.3 242 69.8
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 2.6e-90 335.9 253 70.8
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 4.4e-90 335.1 221 74.2
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 4.4e-90 335.1 240 69.2
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 5.7e-90 334.7 240 72.5
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 7.5e-90 334.3 246 72.8
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 7.5e-90 334.3 246 73.2
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 1.3e-89 333.6 226 72.1
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 1.7e-89 333.2 219 73.5
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 1.7e-89 333.2 233 72.1
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 2.2e-89 332.8 211 74.9
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 6.4e-89 331.3 245 71.8
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 6.4e-89 331.3 245 68.6
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 1.4e-88 330.1 240 70.0
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 1.8e-88 329.7 187 84.0
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 2.4e-88 329.3 186 80.6
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 2.4e-88 329.3 186 80.6
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 2.4e-88 329.3 266 66.5
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 2.4e-88 329.3 239 69.0
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 2.4e-88 329.3 240 68.8
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 4.1e-88 328.6 241 67.2
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 5.4e-88 328.2 211 73.5
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 5.4e-88 328.2 243 67.9
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 5.4e-88 328.2 243 67.9
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 5.4e-88 328.2 221 73.8
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 7.0e-88 327.8 186 80.1
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 9.2e-88 327.4 186 80.6
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 9.2e-88 327.4 221 73.3
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 1.2e-87 327.0 242 68.2
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 1.2e-87 327.0 242 68.6
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 1.2e-87 327.0 249 67.5
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.2e-87 327.0 264 68.6
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 1.2e-87 327.0 244 68.9
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 1.6e-87 326.6 242 68.2
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 1.6e-87 326.6 242 68.2
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.6e-87 326.6 266 67.7
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 1.6e-87 326.6 240 67.9
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 2.0e-87 326.2 213 73.2
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 2.0e-87 326.2 265 65.7
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 2.0e-87 326.2 240 67.1
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 3.5e-87 325.5 218 72.9
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 4.6e-87 325.1 240 70.0
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 5.9e-87 324.7 186 79.6
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 7.8e-87 324.3 234 73.1
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 7.8e-87 324.3 223 71.7
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 7.8e-87 324.3 240 67.9
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 1.0e-86 323.9 242 66.9
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 1.7e-86 323.2 241 66.0
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 2.5e-85 319.3 245 64.5
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 3.3e-85 318.9 229 68.6
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 7.3e-85 317.8 255 64.3
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 9.5e-85 317.4 241 66.4
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 1.6e-84 316.6 244 69.3
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 2.1e-84 316.2 243 69.1
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 2.8e-84 315.8 246 63.8
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 3.6e-84 315.5 225 70.7
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 1.8e-83 313.2 220 68.2
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 1.8e-83 313.2 199 72.9
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 6.8e-83 311.2 198 75.3
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 9.8e-82 307.4 244 68.9
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 1.3e-81 307.0 213 70.4
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 6.4e-81 304.7 240 65.4
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 9.2e-80 300.8 197 73.1
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 4.6e-79 298.5 203 75.4
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 1.3e-78 297.0 225 69.8
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 6.6e-78 294.7 240 64.6
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 7.3e-77 291.2 184 76.1
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 2.1e-76 289.7 202 70.8
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.0e-74 283.1 162 82.1
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 3.4e-74 282.3 187 68.4
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 2.9e-73 279.3 306 52.0
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 2.4e-72 276.2 240 59.2
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 7.8e-71 271.2 183 66.1
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 1.0e-70 270.8 222 58.1
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 1.9e-69 266.5 177 74.0
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 1.2e-68 263.8 165 75.2
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 3.8e-65 252.3 360 43.3
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 1.2e-60 237.3 182 61.5
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 3.5e-55 219.2 182 56.6
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 6.6e-54 214.9 133 74.4
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 3.3e-45 186.0 128 65.6
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 7.4e-45 184.9 103 80.6
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 2.0e-42 176.8 103 77.7
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 6.4e-41 171.8 143 65.7
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 9.0e-27 124.8 78 74.4
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 1.9e-24 117.1 166 41.0
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 1.3e-22 110.9 242 28.1
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 1.5e-21 107.5 63 79.4
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 1.3e-20 104.4 182 29.7
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 2.2e-20 103.6 178 29.2
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 6.3e-20 102.1 182 26.4
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 1.4e-19 100.9 181 25.4
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 1.4e-19 100.9 183 29.0
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 5.3e-19 99.0 184 27.7
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 9.1e-19 98.2 183 26.2
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 1.5e-18 97.4 182 28.0
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 1.5e-18 97.4 184 28.3
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 2.0e-18 97.1 182 28.0
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 3.4e-18 96.3 164 29.9
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 4.5e-18 95.9 184 27.7
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 5.9e-18 95.5 224 29.0
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 3.8e-17 92.8 216 25.0
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 5.0e-17 92.4 242 26.4
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 6.5e-17 92.0 223 29.1
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 8.5e-17 91.7 242 28.1
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 1.1e-16 91.3 201 25.9
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 1.4e-16 90.9 180 26.7
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 1.9e-16 90.5 221 24.9
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 4.2e-16 89.4 163 30.1
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 5.5e-16 89.0 180 25.6
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 4.7e-15 85.9 226 26.5
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 6.1e-15 85.5 231 26.8
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 1.0e-14 84.7 181 25.4
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.4e-14 84.3 181 25.4
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 1.4e-14 84.3 182 26.9
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 1.4e-14 84.3 165 28.5
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 1.8e-14 84.0 221 25.8
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 1.1e-13 81.3 240 25.8
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 2.0e-13 80.5 165 24.2
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 2.0e-13 80.5 241 24.1
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 2.6e-13 80.1 165 24.2
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 3.3e-13 79.7 188 25.5
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 4.4e-13 79.3 232 25.0
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 5.7e-13 79.0 180 27.2
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 9.7e-13 78.2 180 23.3
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 1.3e-12 77.8 181 24.9
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 1.7e-12 77.4 183 24.6
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 1.7e-12 77.4 242 26.0
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 2.8e-12 76.6 242 26.0
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 3.7e-12 76.3 248 25.8
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 4.8e-12 75.9 241 24.1
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 6.3e-12 75.5 184 24.5
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 3.1e-11 73.2 148 29.1
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 4.1e-11 72.8 166 24.1
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 1.2e-10 71.2 169 24.9
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 1.5e-10 70.9 135 26.7
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 1.5e-10 70.9 37 81.1
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 2.6e-10 70.1 240 27.5
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 4.5e-10 69.3 184 25.5
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.7e-09 67.4 39 82.1
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 1.1e-08 64.7 178 24.2
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 6.1e-07 58.9 148 23.0
SEGI_12906 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 1.8e-06 57.4 32 78.1


User provided reference genes

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