Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 7.8e-129 463.8 228 100.0
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 4.4e-47 192.2 120 84.2
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 8.0e-41 171.4 120 72.5
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.0e-40 171.0 127 70.1
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 2.3e-40 169.9 120 72.5
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 4.0e-40 169.1 127 70.1
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 4.0e-40 169.1 120 72.5
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 4.0e-40 169.1 120 72.5
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 1.5e-39 167.2 120 71.7
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 2.6e-39 166.4 120 71.7
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 2.6e-39 166.4 120 70.0
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 5.7e-39 165.2 120 70.8
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 7.5e-39 164.9 120 69.2
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 7.5e-39 164.9 120 70.0
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 9.8e-39 164.5 120 70.8
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 9.8e-39 164.5 120 70.8
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 9.8e-39 164.5 120 70.0
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 1.3e-38 164.1 120 68.3
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 1.3e-38 164.1 120 68.3
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 1.7e-38 163.7 109 77.1
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 2.8e-38 162.9 120 67.5
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 2.8e-38 162.9 120 70.0
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 2.8e-38 162.9 120 67.5
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 3.7e-38 162.5 120 69.2
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 8.3e-38 161.4 120 67.5
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 8.3e-38 161.4 120 70.0
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 1.1e-37 161.0 119 68.9
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 1.1e-37 161.0 125 64.8
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 1.1e-37 161.0 120 68.3
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 1.8e-37 160.2 120 68.3
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 2.4e-37 159.8 116 70.7
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 3.1e-37 159.5 120 65.0
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 4.1e-37 159.1 120 68.3
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 4.1e-37 159.1 116 71.6
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 4.1e-37 159.1 120 67.5
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 5.4e-37 158.7 119 68.9
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 5.4e-37 158.7 116 69.8
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 7.0e-37 158.3 120 69.2
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 7.0e-37 158.3 120 69.2
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 7.0e-37 158.3 120 67.5
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 9.1e-37 157.9 120 64.2
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 9.1e-37 157.9 119 66.4
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 1.2e-36 157.5 120 66.7
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.2e-36 157.5 120 66.7
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.2e-36 157.5 120 64.2
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.2e-36 157.5 120 64.2
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 2.0e-36 156.8 119 63.9
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 4.5e-36 155.6 123 68.3
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 4.5e-36 155.6 123 68.3
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 7.7e-36 154.8 119 65.5
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 1.0e-35 154.5 120 64.2
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 1.0e-35 154.5 120 64.2
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 1.0e-35 154.5 119 62.2
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.3e-35 154.1 120 62.5
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.3e-35 154.1 120 62.5
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 1.7e-35 153.7 119 63.9
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 2.9e-35 152.9 119 64.7
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 2.9e-35 152.9 119 64.7
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 5.0e-35 152.1 119 63.0
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 5.0e-35 152.1 116 67.2
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 6.6e-35 151.8 119 63.9
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 6.6e-35 151.8 119 63.9
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 6.6e-35 151.8 119 63.9
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 8.6e-35 151.4 119 63.0
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 8.6e-35 151.4 119 64.7
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 8.6e-35 151.4 120 64.2
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 1.1e-34 151.0 119 63.0
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 1.1e-34 151.0 119 63.9
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 1.1e-34 151.0 120 62.5
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 1.1e-34 151.0 120 63.3
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 1.5e-34 150.6 123 66.7
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 2.5e-34 149.8 122 64.8
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 7.2e-34 148.3 120 61.7
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 9.5e-34 147.9 119 61.3
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 4.7e-33 145.6 116 63.8
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 8.0e-33 144.8 119 60.5
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 1.8e-32 143.7 120 57.5
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 1.8e-32 143.7 120 57.5
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 2.3e-32 143.3 120 60.8
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 3.0e-32 142.9 120 60.8
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 5.2e-32 142.1 120 60.0
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 6.8e-32 141.7 108 68.5
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 8.9e-32 141.4 120 59.2
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 8.9e-32 141.4 120 59.2
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 1.2e-31 141.0 120 60.0
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 1.2e-31 141.0 114 58.8
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 3.4e-31 139.4 120 55.8
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 4.4e-31 139.0 119 60.5
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 1.7e-30 137.1 120 57.5
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 1.7e-30 137.1 114 56.1
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 2.2e-30 136.7 120 55.8
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 2.9e-30 136.3 119 58.8
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 2.9e-30 136.3 119 58.8
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 2.9e-30 136.3 121 57.0
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 3.7e-30 136.0 120 55.8
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 6.3e-30 135.2 121 56.2
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 1.1e-29 134.4 108 63.9
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 1.8e-29 133.7 119 57.1
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 1.8e-29 133.7 114 57.9
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 1.2e-28 131.0 119 56.3
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 2.9e-27 126.3 125 53.6
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 5.0e-27 125.6 119 50.4
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 9.5e-26 121.3 114 47.4
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 3.6e-25 119.4 108 60.2
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 6.1e-25 118.6 79 69.6
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 2.3e-24 116.7 112 52.7
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 6.8e-24 115.2 73 75.3
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 3.4e-23 112.8 119 47.1
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 5.8e-23 112.1 104 59.6
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 9.8e-23 111.3 73 75.3
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 2.2e-22 110.2 78 74.4
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 8.3e-22 108.2 112 45.5
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 3.2e-21 106.3 62 79.0
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-20 104.0 62 79.0
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 1.3e-19 100.9 61 78.7
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.3e-19 100.9 72 73.6
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 1.7e-19 100.5 64 73.4
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 1.7e-19 100.5 64 73.4
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 5.0e-19 99.0 52 90.4
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 5.0e-19 99.0 52 90.4
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 1.6e-17 94.0 60 68.3
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 4.7e-17 92.4 78 62.8
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 2.0e-15 87.0 112 35.7
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 2.6e-15 86.7 63 68.3
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 5.8e-15 85.5 53 79.2
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 9.8e-15 84.7 120 45.8
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 1.9e-13 80.5 105 39.0
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 2.7e-12 76.6 77 51.9
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 2.7e-12 76.6 120 40.0
QL04p058624 Quercus lobata HOM05D000003 ORTHO05D000004 4.6e-12 75.9 52 69.2
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 4.6e-12 75.9 120 39.2
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 4.3e-10 69.3 113 31.0
QL05p073919 Quercus lobata HOM05D000003 ORTHO05D000004 4.3e-10 69.3 44 70.5
QL08p036626 Quercus lobata HOM05D000834 ORTHO05D000909 1.2e-09 67.8 44 70.5
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 2.3e-08 63.5 77 45.5
SHI54010 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-07 60.5 34 82.4
Atru.chr6.710 Acer truncatum HOM05D000003 ORTHO05D000004 9.9e-07 58.2 50 44.0
QL07p013368 Quercus lobata HOM05D000003 ORTHO05D000004 9.9e-07 58.2 50 52.0
CSS0031820 Camellia sinensis var. sinensis HOM05D000698 ORTHO05D000004 1.3e-06 57.8 56 50.0
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.3e-06 57.8 42 66.7
QL05p065428 Quercus lobata HOM05D000003 ORTHO05D000004 3.7e-06 56.2 47 57.4
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 3.7e-06 56.2 34 76.5
Atru.chr3.1850 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-06 55.8 42 54.8
Atru.chr6.145 Acer truncatum HOM05D000003 ORTHO05D000167 4.9e-06 55.8 44 45.5
Atru.chr9.913 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-06 55.8 44 45.5
SHI51578 Sapria himalayana HOM05D003729 ORTHO05D004384 4.9e-06 55.8 32 81.2
QL04p056296 Quercus lobata HOM05D000003 ORTHO05D000004 6.4e-06 55.5 67 41.8
QL05p002207 Quercus lobata HOM05D000003 ORTHO05D000167 6.4e-06 55.5 79 40.5
SHI51181 Sapria himalayana HOM05D003729 ORTHO05D004384 8.4e-06 55.1 68 39.7


User provided reference genes

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