Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p042225 Quercus lobata HOM05D004351 ORTHO05D005196 1.3e-31 139.0 67 100.0
QL03p008751 Quercus lobata HOM05D004351 ORTHO05D005196 7.3e-27 123.2 62 95.2
QL01p016827 Quercus lobata HOM05D004351 ORTHO05D005196 1.5e-11 72.4 35 94.3
Cfa009891 Carpinus fangiana HOM05D004351 ORTHO05D005196 7.4e-11 70.1 35 88.6
Cfa009892 Carpinus fangiana HOM05D004351 ORTHO05D005196 7.4e-11 70.1 35 88.6
Haze_23254 Corylus avellana HOM05D004351 ORTHO05D005196 7.4e-11 70.1 35 88.6
TWI79G1476 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 9.6e-11 69.7 35 91.4
FvH4_3g27770 Fragaria vesca HOM05D004351 ORTHO05D005196 1.3e-10 69.3 35 85.7
FAN11G3899 Fragaria x ananassa HOM05D004351 ORTHO05D005196 1.3e-10 69.3 35 85.7
FAN21G2561 Fragaria x ananassa HOM05D004351 ORTHO05D005196 1.3e-10 69.3 35 85.7
TWI31G0625 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 1.3e-10 69.3 35 88.6
TAR636G2603 Trochodendron aralioides HOM05D004351 ORTHO05D005196 1.3e-10 69.3 35 88.6
CSS0023003 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 1.6e-10 68.9 35 88.6
AUR62000207 Chenopodium quinoa HOM05D004351 ORTHO05D005196 1.6e-10 68.9 41 75.6
ClCG02G022760 Citrullus lanatus HOM05D004351 ORTHO05D005196 1.6e-10 68.9 35 88.6
Dinv15025 Davidia involucrata HOM05D004351 ORTHO05D005196 1.6e-10 68.9 35 85.7
Dinv36161 Davidia involucrata HOM05D004351 ORTHO05D005196 1.6e-10 68.9 35 85.7
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 1.6e-10 68.9 35 88.6
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 1.6e-10 68.9 35 88.6
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 1.6e-10 68.9 35 88.6
Hma1.2p1_0460F.1_g157460 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 1.6e-10 68.9 35 85.7
QL05p016402 Quercus lobata HOM05D004351 ORTHO05D005196 1.6e-10 68.9 35 88.6
Sc09g0001080 Simmondsia chinensis HOM05D004351 ORTHO05D005196 1.6e-10 68.9 37 86.5
CiPaw.14G111600 Carya illinoinensis HOM05D004351 ORTHO05D005196 2.1e-10 68.6 35 85.7
Hma1.2p1_0460F.1_g157450 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 2.1e-10 68.6 35 82.9
Prupe.4G264000 Prunus persica HOM05D004351 ORTHO05D005196 2.1e-10 68.6 35 88.6
Prupe.4G264100 Prunus persica HOM05D004351 ORTHO05D005196 2.1e-10 68.6 35 88.6
RcHm_v2.0_Chr5g0050371 Rosa chinensis HOM05D004351 ORTHO05D005196 2.1e-10 68.6 35 85.7
vmacro04976 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 2.1e-10 68.6 35 85.7
Ah.06g194690 Amaranthus hybridus HOM05D004351 ORTHO05D005196 2.8e-10 68.2 39 76.9
TAR633G2420 Trochodendron aralioides HOM05D004351 ORTHO05D005196 2.8e-10 68.2 35 85.7
Actinidia06976 Actinidia chinensis HOM05D004351 ORTHO05D005196 3.7e-10 67.8 35 85.7
MSTRG.18468 Avicennia marina HOM05D004351 ORTHO05D005196 3.7e-10 67.8 35 85.7
AUR62006553 Chenopodium quinoa HOM05D004351 ORTHO05D005196 3.7e-10 67.8 39 76.9
Ciclev10014772m.g Citrus clementina HOM05D004351 ORTHO05D005196 3.7e-10 67.8 35 85.7
CsaV3_6G038890 Cucumis sativus L. HOM05D004351 ORTHO05D005196 3.7e-10 67.8 35 85.7
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 3.7e-10 67.8 35 85.7
HanXRQChr13g0418801 Helianthus annuus HOM05D004351 ORTHO05D005196 3.7e-10 67.8 35 85.7
Oeu013460.1 Olea europaea HOM05D004351 ORTHO05D005196 3.7e-10 67.8 35 85.7
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 3.7e-10 67.8 35 85.7
Actinidia24469 Actinidia chinensis HOM05D004351 ORTHO05D005196 4.8e-10 67.4 35 82.9
CiPaw.13G149200 Carya illinoinensis HOM05D004351 ORTHO05D005196 4.8e-10 67.4 35 85.7
Cc00_g05700 Coffea canephora HOM05D004351 ORTHO05D005196 4.8e-10 67.4 35 82.9
LjContig00564g0010016 Lotus japonicus HOM05D004351 ORTHO05D005196 4.8e-10 67.4 35 82.9
Peaxi162Scf00004g04314 Petunia axillaris HOM05D004351 ORTHO05D005196 4.8e-10 67.4 35 85.7
Sed0012563 Sechium edule HOM05D004351 ORTHO05D005196 4.8e-10 67.4 35 85.7
EL10Ac4g10103 Beta vulgaris HOM05D004351 ORTHO05D005196 6.2e-10 67.0 39 76.9
CANSAT80G2609 Cannabis sativa HOM05D004351 ORTHO05D005196 6.2e-10 67.0 35 82.9
Ca_06202_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 6.2e-10 67.0 35 82.9
Ca_06205_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 6.2e-10 67.0 35 82.9
COL.COLO4_24484 Corchorus olitorius HOM05D004351 ORTHO05D005196 6.2e-10 67.0 35 85.7
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 6.2e-10 67.0 35 85.7
Glyma.02G278600 Glycine max HOM05D004351 ORTHO05D005196 6.2e-10 67.0 35 82.9
Glyma.14G036000 Glycine max HOM05D004351 ORTHO05D005196 6.2e-10 67.0 35 82.9
Glyma.15G055500 Glycine max HOM05D004351 ORTHO05D005196 6.2e-10 67.0 35 82.9
Medtr5g089280 Medicago truncatula HOM05D004351 ORTHO05D005196 6.2e-10 67.0 35 82.9
Phvul.006G204400 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 6.2e-10 67.0 35 80.0
Aqoxy2G00403 Aquilegia oxysepala HOM05D004351 ORTHO05D005196 8.2e-10 66.6 35 80.0
A10p25600 Brassica napus HOM05D004351 ORTHO05D005196 8.2e-10 66.6 35 85.7
TPR.G16412 Trifolium pratense HOM05D004351 ORTHO05D005196 8.2e-10 66.6 35 80.0
VMungo0540G1132 Vigna mungo HOM05D004351 ORTHO05D005196 8.2e-10 66.6 35 80.0
GSVIVG01037327001 Vitis vinifera HOM05D004351 ORTHO05D005196 8.2e-10 66.6 35 85.7
MELO3C014554.2 Cucumis melo HOM05D004351 ORTHO05D005196 1.1e-09 66.2 35 82.9
Migut.D00673 Erythranthe guttata HOM05D004351 ORTHO05D005196 1.1e-09 66.2 35 80.0
Nitab4.5_0006764g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 1.1e-09 66.2 35 82.9
Nitab4.5_0009266g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 1.1e-09 66.2 35 82.9
SalBow6G0501 Salvia bowleyana HOM05D004351 ORTHO05D005196 1.1e-09 66.2 35 80.0
VMungo0647G2253 Vigna mungo HOM05D004351 ORTHO05D005196 1.1e-09 66.2 45 64.4
Atru.chr3.3000 Acer truncatum HOM05D004351 ORTHO05D005196 1.4e-09 65.9 35 82.9
Lalb_Chr17g0347771 Lupinus albus HOM05D004351 ORTHO05D005196 1.4e-09 65.9 35 80.0
Nn7g36761 Nelumbo nucifera HOM05D004351 ORTHO05D005196 1.4e-09 65.9 35 82.9
Phvul.008G202200 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 1.4e-09 65.9 35 82.9
Psat0s6670g0080 Pisum sativum HOM05D004351 ORTHO05D005196 1.4e-09 65.9 35 80.0
Psat6g063440 Pisum sativum HOM05D004351 ORTHO05D005196 1.4e-09 65.9 35 80.0
AL6G22990 Arabidopsis lyrata HOM05D004351 ORTHO05D005196 1.8e-09 65.5 35 82.9
BcaNung06879 Brassica carinata HOM05D004351 ORTHO05D005196 1.8e-09 65.5 35 82.9
C09p64690 Brassica napus HOM05D004351 ORTHO05D005196 1.8e-09 65.5 35 82.9
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 1.8e-09 65.5 35 82.9
BraA10t44627Z Brassica rapa HOM05D004351 ORTHO05D005196 1.8e-09 65.5 35 82.9
CAN.G468.6 Capsicum annuum HOM05D004351 ORTHO05D005196 1.8e-09 65.5 35 82.9
Cc00_g05720 Coffea canephora HOM05D004351 ORTHO05D005196 1.8e-09 65.5 35 80.0
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 1.8e-09 65.5 35 82.9
PSO339G1418 Papaver somniferum HOM05D004351 ORTHO05D005196 1.8e-09 65.5 35 77.1
PGR119G0622 Punica granatum HOM05D004351 ORTHO05D005196 1.8e-09 65.5 35 80.0
Solyc11g064920.2 Solanum lycopersicum HOM05D004351 ORTHO05D005196 1.8e-09 65.5 35 82.9
Sopen11g024720 Solanum pennellii HOM05D004351 ORTHO05D005196 1.8e-09 65.5 35 82.9
TPR.G16392 Trifolium pratense HOM05D004351 ORTHO05D005196 1.8e-09 65.5 35 80.0
Eucgr.J00683 Eucalyptus grandis HOM05D004351 ORTHO05D005196 2.4e-09 65.1 39 74.4
Rhsim13G0210300 Rhododendron simsii HOM05D004351 ORTHO05D005196 2.4e-09 65.1 35 82.9
Thecc.09G247500 Theobroma cacao HOM05D004351 ORTHO05D005196 2.4e-09 65.1 35 82.9
HPP92_018205 Vanilla planifolia HOM05D004351 ORTHO05D005196 2.4e-09 65.1 43 65.1
MD03G1164800 Malus domestica HOM05D004351 ORTHO05D005196 3.1e-09 64.7 35 82.9
unitig_62.g23874 Utricularia gibba HOM05D004351 ORTHO05D005196 3.1e-09 64.7 35 77.1
AT5G12200 Arabidopsis thaliana HOM05D004351 ORTHO05D005196 4.0e-09 64.3 35 80.0
Cpa.g.sc34.180 Carica papaya HOM05D004351 ORTHO05D005196 4.0e-09 64.3 35 80.0
PGR119G2369 Punica granatum HOM05D004351 ORTHO05D005196 4.0e-09 64.3 35 80.0
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 4.0e-09 64.3 39 74.4
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 4.0e-09 64.3 35 80.0
THA.LOC104811202 Tarenaya hassleriana HOM05D004351 ORTHO05D005196 5.3e-09 63.9 35 80.0
arahy.Tifrunner.gnm1.ann1.3AG2SN Arachis hypogaea HOM05D004351 ORTHO05D005196 6.9e-09 63.5 35 80.0
arahy.Tifrunner.gnm1.ann1.A6ZB5M Arachis hypogaea HOM05D004351 ORTHO05D005196 6.9e-09 63.5 35 80.0
CARHR200920 Cardamine hirsuta HOM05D004351 ORTHO05D005196 6.9e-09 63.5 35 77.1
DCAR_023830 Daucus carota HOM05D004351 ORTHO05D005196 6.9e-09 63.5 35 80.0
Psat0s4007g0120 Pisum sativum HOM05D004351 ORTHO05D005196 6.9e-09 63.5 35 77.1
Sabra09G0050700 Salix brachista HOM05D004351 ORTHO05D005196 6.9e-09 63.5 35 77.1
Eucgr.J00682 Eucalyptus grandis HOM05D004351 ORTHO05D005196 9.0e-09 63.2 35 77.1
LjContig00564g0013946 Lotus japonicus HOM05D004351 ORTHO05D005196 9.0e-09 63.2 35 77.1
Carub.0006s1070 Capsella rubella HOM05D004351 ORTHO05D005196 1.2e-08 62.8 35 80.0
Medtr5g089200 Medicago truncatula HOM05D004351 ORTHO05D005196 1.2e-08 62.8 35 77.1
Potri.001G273400 Populus trichocarpa HOM05D004351 ORTHO05D005196 1.2e-08 62.8 35 77.1
Thhalv10013212m.g Eutrema salsugineum HOM05D004351 ORTHO05D005196 1.5e-08 62.4 35 80.0
Glyma.08G177502 Glycine max HOM05D004351 ORTHO05D005196 1.5e-08 62.4 35 74.3
Sp6g31440 Schrenkiella parvula HOM05D004351 ORTHO05D005196 1.5e-08 62.4 35 80.0
Psat2g020840 Pisum sativum HOM05D004351 ORTHO05D005196 2.0e-08 62.0 35 77.1
CDE09G1005 Ceratophyllum demersum HOM05D004351 ORTHO05D005196 2.6e-08 61.6 35 80.0
Gohir.D08G020300 Gossypium hirsutum HOM05D004351 ORTHO05D005196 2.6e-08 61.6 35 80.0
Gohir.A08G010200 Gossypium hirsutum HOM05D004351 ORTHO05D005196 3.4e-08 61.2 35 80.0
Zm00001eb150370 Zea mays HOM05D004351 ORTHO05D005196 3.4e-08 61.2 42 61.9
Aa31LG3G15030 Aethionema arabicum HOM05D004351 ORTHO05D005196 4.5e-08 60.8 35 74.3
ATR1096G054 Amborella trichopoda HOM05D004351 ORTHO05D005196 4.5e-08 60.8 35 71.4
Potri.009G067700 Populus trichocarpa HOM05D004351 ORTHO05D005196 4.5e-08 60.8 35 77.1
Gorai.004G014900 Gossypium raimondii HOM05D004351 ORTHO05D005196 7.6e-08 60.1 35 77.1
Os01g0807900 Oryza sativa ssp. japonica HOM05D004351 ORTHO05D005196 1.3e-07 59.3 35 74.3
Lj2C622G21 Lonicera japonica HOM05D004351 ORTHO05D005196 1.7e-07 58.9 49 63.3
Lsat_1_v5_gn_3_110020 Lactuca sativa HOM05D004351 ORTHO05D005196 2.2e-07 58.5 35 77.1
Sc09g0005690 Simmondsia chinensis HOM05D004351 ORTHO05D005196 3.8e-07 57.8 32 84.4
SEGI_39462 Sequoiadendron giganteum HOM05D004351 ORTHO05D005196 4.9e-07 57.4 35 65.7
LjContig00564g0001423 Lotus japonicus HOM05D004351 ORTHO05D005196 6.5e-07 57.0 34 67.6
Pp3c24_19320 Physcomitrium patens HOM05D004351 ORTHO05D005196 6.5e-07 57.0 35 68.6
AagrBONN_evm.TU.Sc2ySwM_344.922 Anthoceros agrestis HOM05D004351 ORTHO05D005196 2.5e-06 55.1 35 65.7
SMO351G0214 Selaginella moellendorffii HOM05D004351 ORTHO05D005196 2.5e-06 55.1 65 43.1
Mapoly0086s0068 Marchantia polymorpha HOM05D004351 ORTHO05D005196 3.2e-06 54.7 35 65.7
Lj2A623G23 Lonicera japonica HOM05D004351 ORTHO05D005196 9.3e-06 53.1 35 62.9


User provided reference genes

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