Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 6.5e-230 800.4 422 100.0
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 1.2e-175 620.2 429 78.3
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 3.9e-174 615.1 425 76.9
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 1.1e-173 613.6 412 78.4
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 3.4e-170 602.1 407 76.2
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 2.8e-164 582.4 419 73.3
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 1.1e-163 580.5 427 70.3
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 1.1e-163 580.5 417 71.5
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 1.8e-163 579.7 428 70.1
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 2.0e-162 576.2 417 68.6
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 4.4e-162 575.1 417 71.0
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 7.6e-162 574.3 420 70.0
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 1.3e-161 573.5 382 76.4
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 1.3e-161 573.5 415 71.8
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 2.9e-161 572.4 420 69.5
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 2.9e-161 572.4 426 68.8
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 8.4e-161 570.9 416 70.4
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.9e-160 569.7 417 71.5
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 3.2e-160 568.9 417 70.5
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 4.2e-160 568.5 417 71.2
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 1.2e-159 567.0 423 70.4
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 6.0e-159 564.7 427 69.8
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 6.0e-159 564.7 373 75.3
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 7.8e-159 564.3 419 70.6
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 8.7e-158 560.8 375 73.9
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 4.3e-157 558.5 372 76.9
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 7.3e-157 557.8 429 69.2
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 2.1e-156 556.2 409 69.9
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 3.6e-156 555.4 397 70.8
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 4.8e-156 555.1 418 67.5
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 1.4e-155 553.5 377 74.0
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 5.3e-155 551.6 380 73.2
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 6.9e-155 551.2 376 74.2
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 9.9e-154 547.4 371 72.5
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 2.2e-153 546.2 420 66.4
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 2.9e-153 545.8 389 70.7
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 3.8e-153 545.4 399 68.4
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 4.9e-153 545.0 468 60.5
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 6.4e-153 544.7 395 71.1
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 6.4e-153 544.7 393 70.7
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 1.1e-152 543.9 378 71.2
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 3.2e-152 542.3 365 75.6
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 7.1e-152 541.2 426 66.0
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 7.1e-152 541.2 392 67.3
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 9.3e-152 540.8 420 66.4
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 1.2e-151 540.4 406 68.0
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.2e-151 540.4 417 68.3
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.2e-151 540.4 417 68.3
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 2.1e-151 539.7 392 67.1
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 6.0e-151 538.1 424 68.4
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 6.0e-151 538.1 408 66.2
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 7.9e-151 537.7 415 66.5
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 1.3e-150 537.0 422 65.4
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 2.3e-150 536.2 389 70.7
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 3.0e-150 535.8 389 68.1
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 3.9e-150 535.4 384 70.1
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 3.9e-150 535.4 376 71.8
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 6.7e-150 534.6 396 68.4
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 8.7e-150 534.3 410 67.8
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.1e-149 533.9 429 64.1
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 2.5e-149 532.7 417 66.7
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 2.5e-149 532.7 385 69.9
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 3.3e-149 532.3 414 66.7
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 3.3e-149 532.3 414 66.7
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.3e-148 530.4 402 67.2
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 1.6e-148 530.0 376 70.5
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 2.8e-148 529.3 428 65.9
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.7e-148 528.9 374 70.1
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 6.2e-148 528.1 391 68.5
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 6.2e-148 528.1 377 68.4
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 8.1e-148 527.7 378 70.9
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 1.4e-147 526.9 414 66.4
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 1.8e-147 526.6 408 64.7
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 2.4e-147 526.2 426 65.5
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 5.3e-147 525.0 385 69.4
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 5.3e-147 525.0 382 68.8
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 6.9e-147 524.6 374 75.7
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 6.9e-147 524.6 407 66.3
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 2.6e-146 522.7 376 68.4
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 3.4e-146 522.3 439 63.1
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 3.4e-146 522.3 403 67.7
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.5e-146 521.9 385 69.9
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 7.6e-146 521.2 417 65.2
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 2.9e-145 519.2 404 65.6
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 2.4e-144 516.2 403 66.3
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 2.7e-143 512.7 387 66.4
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 1.0e-142 510.8 353 71.7
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 1.1e-139 500.7 374 70.6
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 1.5e-138 496.9 376 65.4
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 3.0e-134 482.6 386 62.7
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 1.1e-133 480.7 378 66.4
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 1.5e-133 480.3 370 65.9
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 1.5e-133 480.3 378 66.1
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 2.2e-129 466.5 418 63.9
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 4.2e-128 462.2 364 64.6
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 9.3e-128 461.1 371 64.2
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 6.7e-126 454.9 415 60.0
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 2.0e-122 443.4 386 58.8
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 1.2e-119 434.1 389 60.2
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 2.3e-118 429.9 377 59.9
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 3.0e-118 429.5 386 58.5
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 4.4e-117 425.6 377 58.6
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 1.5e-114 417.2 384 57.0
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 2.1e-111 406.8 390 55.1
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 4.7e-111 405.6 392 54.8
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 1.5e-109 400.6 380 56.6
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 3.1e-107 392.9 379 55.9
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 4.2e-104 382.5 383 52.0
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 2.0e-101 373.6 387 50.9
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 3.2e-96 356.3 322 59.0
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 7.5e-93 345.1 299 63.2
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 6.3e-92 342.0 383 50.7
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.0e-90 337.0 223 72.6
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 1.0e-89 334.7 272 62.9
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 2.3e-86 323.6 322 55.3
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 5.6e-80 302.4 179 79.9
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 5.6e-80 302.4 179 79.9
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 2.2e-76 290.4 399 42.6
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 9.2e-59 231.9 379 40.6
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 3.0e-57 226.9 168 65.5
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 4.9e-52 209.5 442 36.0
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 2.7e-50 203.8 149 69.8
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 5.4e-35 152.9 153 58.2
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 4.6e-34 149.8 397 32.2
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 7.9e-34 149.1 123 61.8
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.5e-32 144.8 146 54.1
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 1.5e-32 144.8 83 80.7
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 2.4e-30 137.5 396 32.8
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.3e-12 78.6 73 53.4
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.3e-12 78.6 73 53.4
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 2.7e-10 70.9 85 50.6
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 2.8e-07 60.8 107 35.5
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 4.1e-06 57.0 317 24.6
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 5.3e-06 56.6 384 23.4


User provided reference genes

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