Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 6.0e-135 484.2 247 100.0
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 8.9e-70 267.7 211 70.6
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 1.2e-55 220.7 119 94.1
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.5e-53 213.8 211 55.9
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 1.7e-52 210.3 211 56.4
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 1.4e-51 207.2 211 55.5
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 7.1e-43 178.3 122 69.7
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 2.1e-42 176.8 210 49.0
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 8.7e-41 171.4 122 65.6
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.5e-40 169.9 122 64.8
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 2.5e-40 169.9 122 64.8
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 3.3e-40 169.5 211 46.4
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 3.3e-40 169.5 122 63.9
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.1e-39 166.8 122 63.1
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.8e-39 166.4 211 46.0
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 2.8e-39 166.4 211 45.5
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.6e-39 166.0 211 45.5
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 6.2e-39 165.2 122 65.6
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.1e-38 164.5 122 60.7
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.1e-38 164.5 122 61.5
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.4e-38 164.1 123 60.2
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 2.4e-38 163.3 122 63.9
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 5.3e-38 162.2 121 60.3
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 5.3e-38 162.2 122 60.7
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 6.9e-38 161.8 201 46.8
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.2e-37 161.0 211 43.6
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 3.4e-37 159.5 204 44.6
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.4e-37 159.5 122 63.1
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 4.4e-37 159.1 122 59.8
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 5.8e-37 158.7 122 59.8
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 9.9e-37 157.9 123 62.6
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 1.7e-36 157.1 122 59.0
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 1.7e-36 157.1 122 62.3
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.7e-36 157.1 215 44.2
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.2e-36 156.8 122 63.1
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.2e-36 156.8 122 63.1
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 2.2e-36 156.8 122 59.0
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.9e-36 156.4 122 58.2
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.9e-36 156.4 122 58.2
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 3.8e-36 156.0 204 44.1
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 3.8e-36 156.0 123 61.8
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.1e-35 154.5 122 59.0
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.1e-35 154.5 122 59.8
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 1.4e-35 154.1 122 59.0
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.4e-35 153.3 122 60.7
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 4.6e-34 149.1 203 40.4
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 4.6e-34 149.1 122 59.8
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 7.9e-34 148.3 122 55.7
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 7.9e-34 148.3 122 52.5
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 1.0e-33 147.9 122 58.2
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.7e-33 144.8 122 55.7
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 8.7e-33 144.8 122 55.7
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 1.1e-32 144.4 122 55.7
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-32 144.4 122 55.7
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-32 144.4 122 55.7
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.1e-32 144.4 122 57.4
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.9e-32 143.7 122 54.9
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.5e-32 143.3 123 53.7
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 2.5e-32 143.3 123 54.5
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 3.3e-32 142.9 122 54.9
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 5.6e-32 142.1 121 54.5
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 5.6e-32 142.1 122 54.1
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 7.3e-32 141.7 122 52.5
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 9.6e-32 141.4 122 54.1
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 2.8e-31 139.8 121 56.2
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 4.8e-31 139.0 122 54.1
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.4e-30 137.5 123 55.3
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 1.8e-30 137.1 123 56.9
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 2.4e-30 136.7 123 55.3
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.1e-30 136.3 123 55.3
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 4.0e-30 136.0 122 54.1
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 5.3e-30 135.6 122 53.3
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 6.9e-30 135.2 122 50.8
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 6.9e-30 135.2 123 55.3
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.2e-29 134.4 122 54.1
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.5e-29 134.0 122 54.9
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.5e-29 134.0 122 54.9
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.0e-29 133.7 122 53.3
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 2.6e-29 133.3 115 53.9
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 3.4e-29 132.9 122 51.6
QL01p011562 Quercus lobata HOM05D003034 ORTHO05D029951 4.5e-29 132.5 78 87.2
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 7.6e-29 131.7 123 49.6
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 7.6e-29 131.7 123 53.7
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.3e-28 131.0 143 48.3
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.7e-28 130.6 157 49.0
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 2.2e-28 130.2 121 51.2
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.9e-28 129.8 122 49.2
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 2.9e-28 129.8 125 52.0
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 1.9e-27 127.1 122 50.8
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 3.2e-27 126.3 122 52.5
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 3.2e-27 126.3 122 49.2
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 3.2e-27 126.3 122 49.2
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.2e-27 125.9 154 46.8
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 4.2e-27 125.9 143 47.6
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 5.5e-27 125.6 151 44.4
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 7.1e-27 125.2 121 49.6
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.6e-26 124.0 122 50.8
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 1.6e-26 124.0 211 38.4
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.1e-26 123.6 122 49.2
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 2.7e-26 123.2 103 53.4
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 3.5e-26 122.9 124 50.0
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 6.0e-26 122.1 124 49.2
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 7.9e-26 121.7 137 46.7
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.0e-25 121.3 122 49.2
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 6.7e-25 118.6 124 47.6
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 8.7e-25 118.2 124 50.8
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 1.1e-24 117.9 121 46.3
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 1.1e-24 117.9 122 45.9
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.5e-24 117.5 122 46.7
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.5e-24 116.7 122 46.7
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 3.3e-24 116.3 144 40.3
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 7.4e-24 115.2 129 45.7
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 9.6e-24 114.8 122 44.3
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 2.8e-23 113.2 127 45.7
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 3.7e-23 112.8 121 46.3
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 3.7e-23 112.8 122 45.9
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 4.8e-23 112.5 121 47.9
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 6.2e-23 112.1 155 41.3
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 6.2e-23 112.1 123 42.3
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 8.1e-23 111.7 123 46.3
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.8e-22 110.5 124 43.5
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 2.4e-22 110.2 124 45.2
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 6.9e-22 108.6 124 46.8
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 1.2e-21 107.8 120 45.0
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.2e-21 107.8 122 42.6
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.6e-21 106.7 121 43.0
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.5e-21 105.9 122 43.4
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 4.5e-21 105.9 89 60.7
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 5.8e-21 105.5 124 42.7
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 7.6e-21 105.1 151 40.4
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 1.0e-20 104.8 124 44.4
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 1.3e-20 104.4 126 46.0
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 1.7e-20 104.0 124 46.0
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 2.9e-20 103.2 124 43.5
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 2.9e-20 103.2 124 39.5
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 2.9e-20 103.2 124 39.5
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 2.9e-20 103.2 124 39.5
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 3.8e-20 102.8 124 39.5
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 3.8e-20 102.8 124 39.5
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 6.5e-20 102.1 124 43.5
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 8.4e-20 101.7 152 38.2
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 1.1e-19 101.3 125 42.4
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 1.4e-19 100.9 124 37.9
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.9e-19 100.5 122 41.0
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.5e-19 100.1 123 44.7
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 3.2e-19 99.8 124 44.4
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 4.2e-19 99.4 89 50.6
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 7.9e-18 95.1 154 39.0
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 7.9e-18 95.1 82 50.0
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 3.0e-17 93.2 125 42.4
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 3.0e-17 93.2 125 42.4
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 3.0e-17 93.2 77 59.7
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 6.7e-17 92.0 122 39.3
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-16 91.3 119 39.5
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.1e-16 91.3 97 47.4
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.5e-16 90.9 96 47.9
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 2.5e-16 90.1 122 40.2
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 9.6e-16 88.2 122 36.1
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 4.8e-15 85.9 75 52.0
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 1.4e-14 84.3 124 39.5
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 1.4e-14 84.3 119 37.8
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 3.1e-14 83.2 122 38.5
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 5.3e-14 82.4 121 37.2
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 3.4e-13 79.7 143 32.2
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.3e-12 77.8 88 40.9
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 2.2e-12 77.0 99 38.4
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 2.1e-10 70.5 95 40.0
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.1e-09 65.9 61 47.5
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 6.7e-09 65.5 65 50.8
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 8.7e-09 65.1 51 62.7
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 3.3e-08 63.2 51 60.8
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 5.7e-08 62.4 143 28.7
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.6e-07 60.8 68 36.8
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.1e-06 58.2 93 39.8


User provided reference genes

Program Settings