Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 0.0e+00 1213.4 592 100.0
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 0.0e+00 1114.0 592 89.9
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 1.1e-304 1049.3 594 84.0
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 2.9e-300 1034.6 596 83.1
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 2.9e-300 1034.6 592 83.4
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 8.4e-300 1033.1 592 82.6
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 1.4e-299 1032.3 595 82.9
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 1.9e-299 1031.9 592 82.8
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 1.9e-296 1021.9 592 82.4
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 5.6e-296 1020.4 592 81.2
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 1.1e-294 1016.1 592 82.3
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 3.1e-294 1014.6 592 81.1
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 1.5e-293 1012.3 592 81.1
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 2.9e-292 1008.1 596 81.2
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 6.4e-292 1006.9 592 80.6
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 1.6e-290 1002.3 592 79.9
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 4.6e-290 1000.7 593 79.8
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 1.0e-289 999.6 592 80.4
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 6.6e-289 996.9 592 79.4
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 1.5e-288 995.7 592 79.4
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 3.3e-288 994.6 592 80.4
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 4.3e-288 994.2 592 79.7
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 1.8e-286 988.8 595 80.3
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 9.9e-285 983.0 600 79.3
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 2.3e-281 971.8 633 74.9
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 1.1e-280 969.5 593 78.2
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 1.9e-280 968.8 593 78.8
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 6.9e-278 960.3 629 74.7
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 5.8e-277 957.2 594 76.9
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 9.9e-277 956.4 594 76.4
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 2.9e-276 954.9 631 72.7
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 7.1e-275 950.3 594 76.6
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 4.6e-274 947.6 595 76.1
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 6.0e-274 947.2 597 76.2
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 6.7e-273 943.7 668 69.9
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 8.7e-273 943.3 594 76.3
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 3.3e-272 941.4 592 76.5
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 7.4e-272 940.3 579 77.9
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 2.1e-271 938.7 554 82.1
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 4.8e-271 937.6 604 75.2
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 4.8e-271 937.6 592 76.0
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 1.8e-270 935.6 592 75.0
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 2.6e-269 931.8 592 75.5
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 1.0e-268 929.9 553 81.6
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 1.3e-268 929.5 592 75.2
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 8.4e-268 926.8 591 76.1
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 2.5e-267 925.2 592 74.2
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 7.1e-267 923.7 594 74.6
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 6.7e-265 917.1 614 73.3
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 5.7e-264 914.1 595 74.5
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 6.3e-263 910.6 593 75.7
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 2.0e-261 905.6 652 71.5
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.1e-259 899.8 594 73.7
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.1e-259 899.8 594 73.9
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 2.1e-258 895.6 590 73.2
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 2.3e-257 892.1 645 69.6
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 5.1e-257 891.0 569 74.2
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 3.4e-253 878.2 596 72.1
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 1.1e-251 873.2 597 72.2
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 2.5e-251 872.1 592 69.8
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 9.4e-251 870.2 594 70.4
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 1.4e-249 866.3 592 71.8
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 1.8e-249 865.9 594 70.0
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 2.4e-246 855.5 533 76.9
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 6.5e-244 847.4 585 72.3
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 1.4e-243 846.3 594 71.5
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 5.5e-243 844.3 595 71.4
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 6.1e-242 840.9 592 70.9
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 3.3e-240 835.1 546 74.0
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 7.4e-240 833.9 600 70.2
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 6.3e-239 830.9 594 66.3
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 9.1e-238 827.0 605 69.8
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 1.2e-237 826.6 530 74.2
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 8.5e-236 820.5 594 66.0
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 5.2e-233 811.2 578 69.6
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 2.0e-232 809.3 518 76.1
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 1.7e-231 806.2 592 65.5
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 5.3e-230 801.2 592 65.7
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 1.6e-229 799.7 598 67.9
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 5.9e-229 797.7 597 65.2
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 5.9e-229 797.7 528 72.9
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 7.7e-229 797.3 686 60.8
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 2.2e-228 795.8 597 63.8
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 8.5e-228 793.9 599 64.9
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 2.1e-226 789.3 597 64.7
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 1.4e-225 786.6 593 64.9
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 1.4e-225 786.6 509 74.9
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 8.8e-225 783.9 483 78.5
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 6.3e-223 777.7 596 63.6
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 2.4e-222 775.8 595 63.5
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 3.8e-220 768.5 598 62.7
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 7.5e-216 754.2 594 62.1
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 1.7e-215 753.1 573 66.8
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 1.7e-215 753.1 614 62.4
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 9.5e-211 737.3 556 64.0
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 3.2e-182 642.5 531 61.8
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 1.7e-167 593.6 379 74.9
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 2.2e-146 523.5 391 65.5
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 2.5e-142 510.0 609 46.3
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 1.1e-137 494.6 530 52.3
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 1.1e-131 474.6 436 54.6
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 2.7e-125 453.4 599 42.2
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 1.0e-108 398.3 244 76.2
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 2.9e-95 353.6 204 81.9
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 5.0e-87 326.2 251 60.6
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 1.8e-84 317.8 291 56.0
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-76 290.8 617 33.7
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 2.2e-66 257.7 175 67.4
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 6.4e-50 203.0 160 64.4
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 3.8e-42 177.2 134 64.2
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 4.8e-37 160.2 121 62.8
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 1.7e-34 151.8 110 73.6
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 3.8e-34 150.6 80 81.2
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 1.9e-25 121.7 69 78.3
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 6.9e-20 103.2 83 62.7
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 6.1e-16 90.1 52 86.5
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 1.8e-15 88.6 315 24.1
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 1.5e-14 85.5 55 65.5
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 7.7e-11 73.2 45 66.7
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 5.0e-10 70.5 82 45.1
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 1.9e-09 68.6 33 97.0
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 1.6e-08 65.5 44 65.9


User provided reference genes

Program Settings