Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p081050 Quercus lobata HOM05D001100 ORTHO05D007514 3.6e-42 174.5 87 100.0
CiPaw.10G117500 Carya illinoinensis HOM05D001100 ORTHO05D007514 4.9e-31 137.5 87 73.6
Haze_06589 Corylus avellana HOM05D001100 ORTHO05D007514 1.2e-29 132.9 87 74.7
Cfa000342 Carpinus fangiana HOM05D001100 ORTHO05D007514 2.1e-29 132.1 82 76.8
Duzib235G0531 Durio zibethinus HOM05D001100 ORTHO05D007514 4.6e-29 131.0 87 72.4
Lj6g0001591 Lotus japonicus HOM05D001100 ORTHO05D007514 1.7e-28 129.0 84 73.8
Nn1g06802 Nelumbo nucifera HOM05D001100 ORTHO05D007514 5.1e-28 127.5 87 73.6
Potri.004G033200 Populus trichocarpa HOM05D001100 ORTHO05D007514 8.6e-28 126.7 84 71.4
TAR629G1200 Trochodendron aralioides HOM05D001100 ORTHO05D007514 8.6e-28 126.7 87 70.1
Oeu038207.1 Olea europaea HOM05D001100 ORTHO05D007514 1.1e-27 126.3 82 70.7
Eucgr.E03818 Eucalyptus grandis HOM05D001100 ORTHO05D007514 3.3e-27 124.8 87 66.7
TWI63G1131 Tripterygium wilfordii HOM05D001100 ORTHO05D007514 4.3e-27 124.4 85 67.1
Aqoxy1G03915 Aquilegia oxysepala HOM05D001100 ORTHO05D007514 5.6e-27 124.0 85 67.1
Gohir.A05G166200 Gossypium hirsutum HOM05D001100 ORTHO05D007514 5.6e-27 124.0 87 69.0
Thecc.06G201200 Theobroma cacao HOM05D001100 ORTHO05D007514 5.6e-27 124.0 87 70.1
Gorai.009G174400 Gossypium raimondii HOM05D001100 ORTHO05D007514 7.3e-27 123.6 87 69.0
Medtr2g011680 Medicago truncatula HOM05D001100 ORTHO05D007514 9.5e-27 123.2 84 69.0
Glyma.15G066900 Glycine max HOM05D001100 ORTHO05D007514 1.2e-26 122.9 84 70.2
Gohir.D05G169200 Gossypium hirsutum HOM05D001100 ORTHO05D007514 1.2e-26 122.9 87 67.8
VMungo0540G1113 Vigna mungo HOM05D001100 ORTHO05D007514 1.2e-26 122.9 80 71.2
Prupe.4G035200 Prunus persica HOM05D001100 ORTHO05D007514 1.6e-26 122.5 87 67.8
COL.COLO4_31601 Corchorus olitorius HOM05D001100 ORTHO05D007514 2.8e-26 121.7 85 65.9
TPR.G30449 Trifolium pratense HOM05D001100 ORTHO05D007514 2.8e-26 121.7 84 67.9
AUR62014703 Chenopodium quinoa HOM05D001100 ORTHO05D007514 3.6e-26 121.3 87 71.3
Sabra04G0019000 Salix brachista HOM05D001100 ORTHO05D007514 3.6e-26 121.3 82 72.0
CANSAT56G3927 Cannabis sativa HOM05D001100 ORTHO05D007514 4.7e-26 120.9 81 69.1
PSO423G0128 Papaver somniferum HOM05D001100 ORTHO05D007514 4.7e-26 120.9 83 65.1
Hund23599 Selenicereus undatus HOM05D001100 ORTHO05D007514 4.7e-26 120.9 84 65.5
SGA_v2.0_scaffold7G03928 Striga asiatica HOM05D001100 ORTHO05D007514 4.7e-26 120.9 82 67.1
AUR62012491 Chenopodium quinoa HOM05D001100 ORTHO05D007514 6.2e-26 120.6 87 70.1
PSO079G0027 Papaver somniferum HOM05D001100 ORTHO05D007514 6.2e-26 120.6 83 65.1
Ca_00249_v3 Cicer arietinum L. HOM05D001100 ORTHO05D007514 8.1e-26 120.2 81 70.4
RcHm_v2.0_Chr5g0006041 Rosa chinensis HOM05D001100 ORTHO05D007514 8.1e-26 120.2 87 67.8
Sc06g0010650 Simmondsia chinensis HOM05D001100 ORTHO05D007514 8.1e-26 120.2 84 69.0
Solyc02g079250.4 Solanum lycopersicum HOM05D001100 ORTHO05D007514 8.1e-26 120.2 85 67.1
EL10Ac8g20544 Beta vulgaris HOM05D001100 ORTHO05D007514 1.1e-25 119.8 85 67.1
Ciclev10015399m.g Citrus clementina HOM05D001100 ORTHO05D007514 1.1e-25 119.8 85 68.2
CsaV3_6G049640 Cucumis sativus L. HOM05D001100 ORTHO05D007514 1.4e-25 119.4 87 66.7
Sed0027927 Sechium edule HOM05D001100 ORTHO05D007514 1.4e-25 119.4 87 66.7
arahy.Tifrunner.gnm1.ann1.F2LMP4 Arachis hypogaea HOM05D001100 ORTHO05D007514 1.8e-25 119.0 81 69.1
arahy.Tifrunner.gnm1.ann1.Y92ER0 Arachis hypogaea HOM05D001100 ORTHO05D007514 1.8e-25 119.0 81 69.1
Sopen02g024070 Solanum pennellii HOM05D001100 ORTHO05D007514 1.8e-25 119.0 85 67.1
GSVIVG01003661001 Vitis vinifera HOM05D001100 ORTHO05D007514 1.8e-25 119.0 82 65.9
Lj1A1214T67 Lonicera japonica HOM05D001100 ORTHO05D007514 2.3e-25 118.6 85 63.5
Nitab4.5_0000649g0030 Nicotiana tabacum HOM05D001100 ORTHO05D007514 2.3e-25 118.6 85 65.9
MBI18_g26906_MAGBIO Magnolia biondii HOM05D001100 ORTHO05D007514 5.2e-25 117.5 94 63.8
Nitab4.5_0011268g0010 Nicotiana tabacum HOM05D001100 ORTHO05D007514 5.2e-25 117.5 85 65.9
Manes.17G033700 Manihot esculenta HOM05D001100 ORTHO05D007514 6.8e-25 117.1 87 64.4
ECA234G0676 Erigeron canadensis HOM05D001100 ORTHO05D007514 8.9e-25 116.7 87 63.2
PGR042G3840 Punica granatum HOM05D001100 ORTHO05D007514 8.9e-25 116.7 85 64.7
MSTRG.15941 Avicennia marina HOM05D001100 ORTHO05D007514 1.5e-24 115.9 82 63.4
CAN.G424.26 Capsicum annuum HOM05D001100 ORTHO05D007514 1.5e-24 115.9 85 64.7
FvH4_3g03790 Fragaria vesca HOM05D001100 ORTHO05D007514 1.5e-24 115.9 87 64.4
FAN11G0383 Fragaria x ananassa HOM05D001100 ORTHO05D007514 1.5e-24 115.9 87 64.4
Sp6g03900 Schrenkiella parvula HOM05D001100 ORTHO05D007514 1.5e-24 115.9 84 59.5
Phvul.006G192800 Phaseolus vulgaris HOM05D001100 ORTHO05D007514 2.0e-24 115.5 80 67.5
THA.LOC104806271 Tarenaya hassleriana HOM05D001100 ORTHO05D007514 2.0e-24 115.5 84 61.9
AT4G05090 Arabidopsis thaliana HOM05D001100 ORTHO05D007514 2.6e-24 115.2 84 61.9
CSS0027676 Camellia sinensis var. sinensis HOM05D001100 ORTHO05D007514 2.6e-24 115.2 87 63.2
Lalb_Chr20g0122331 Lupinus albus HOM05D001100 ORTHO05D007514 2.6e-24 115.2 85 61.2
Cc02_g12340 Coffea canephora HOM05D001100 ORTHO05D007514 4.4e-24 114.4 82 68.3
CARHR252470 Cardamine hirsuta HOM05D001100 ORTHO05D007514 5.8e-24 114.0 84 61.9
FAN21G0538 Fragaria x ananassa HOM05D001100 ORTHO05D007514 7.5e-24 113.6 87 64.4
Gorai.011G023700 Gossypium raimondii HOM05D001100 ORTHO05D007514 9.9e-24 113.2 87 62.1
MD10G1304500 Malus domestica HOM05D001100 ORTHO05D007514 9.9e-24 113.2 87 62.1
Thhalv10028719m.g Eutrema salsugineum HOM05D001100 ORTHO05D007514 1.3e-23 112.8 84 60.7
ATR0693G145 Amborella trichopoda HOM05D001100 ORTHO05D007514 1.7e-23 112.5 87 62.1
Gohir.D10G022600 Gossypium hirsutum HOM05D001100 ORTHO05D007514 1.7e-23 112.5 87 62.1
ClCG01G022470 Citrullus lanatus HOM05D001100 ORTHO05D007514 2.9e-23 111.7 83 62.7
HanXRQChr17g0552591 Helianthus annuus HOM05D001100 ORTHO05D007514 3.7e-23 111.3 85 61.2
MELO3C007329.2 Cucumis melo HOM05D001100 ORTHO05D007514 6.4e-23 110.5 102 55.9
Gohir.A10G021800 Gossypium hirsutum HOM05D001100 ORTHO05D007514 6.4e-23 110.5 87 62.1
A09p25750 Brassica napus HOM05D001100 ORTHO05D007514 8.3e-23 110.2 84 58.3
BraA09t38144Z Brassica rapa HOM05D001100 ORTHO05D007514 8.3e-23 110.2 84 58.3
BcaC04g21369 Brassica carinata HOM05D001100 ORTHO05D007514 1.1e-22 109.8 84 58.3
C09p32620 Brassica napus HOM05D001100 ORTHO05D007514 1.1e-22 109.8 84 58.3
Zm00001eb324080 Zea mays HOM05D001100 ORTHO05D007514 1.1e-22 109.8 81 60.5
Aa31LG9G9380 Aethionema arabicum HOM05D001100 ORTHO05D007514 1.4e-22 109.4 88 56.8
BolC9t56107H Brassica oleracea HOM05D001100 ORTHO05D007514 1.4e-22 109.4 84 58.3
FAN25G0315 Fragaria x ananassa HOM05D001100 ORTHO05D007514 1.4e-22 109.4 87 62.1
Migut.M01223 Erythranthe guttata HOM05D001100 ORTHO05D007514 1.9e-22 109.0 82 59.8
Lsat_1_v5_gn_4_56421 Lactuca sativa HOM05D001100 ORTHO05D007514 1.9e-22 109.0 85 57.6
Carub.0006s3305 Capsella rubella HOM05D001100 ORTHO05D007514 2.4e-22 108.6 84 54.8
vmacro03803 Vaccinium macrocarpon HOM05D001100 ORTHO05D007514 4.1e-22 107.8 82 61.0
MD05G1326400 Malus domestica HOM05D001100 ORTHO05D007514 7.1e-22 107.1 85 60.0
Os07g0558200 Oryza sativa ssp. japonica HOM05D001100 ORTHO05D007514 1.0e-20 103.2 81 58.0
Solyc02g079270.4 Solanum lycopersicum HOM05D001100 ORTHO05D007514 5.1e-20 100.9 89 59.6
Sopen02g024090 Solanum pennellii HOM05D001100 ORTHO05D007514 5.1e-20 100.9 89 59.6
Actinidia05567 Actinidia chinensis HOM05D001100 ORTHO05D007514 5.6e-19 97.4 83 55.4
Os07g0558300 Oryza sativa ssp. japonica HOM05D001100 ORTHO05D007514 7.3e-19 97.1 81 55.6
unitig_37.g12335 Utricularia gibba HOM05D001100 ORTHO05D007514 2.8e-18 95.1 80 50.0
Peaxi162Scf00779g00210 Petunia axillaris HOM05D001100 ORTHO05D007514 1.8e-17 92.4 64 65.6
EL10Ac6g14662 Beta vulgaris HOM05D001397 ORTHO05D007514 8.9e-17 90.1 71 60.6
Actinidia37011 Actinidia chinensis HOM05D001100 ORTHO05D007514 1.3e-15 86.3 72 55.6
Nitab4.5_0000649g0100 Nicotiana tabacum HOM05D001100 ORTHO05D007514 1.3e-15 86.3 118 44.9
Nitab4.5_0001967g0040 Nicotiana tabacum HOM05D001100 ORTHO05D007514 1.7e-15 85.9 70 58.6
BcaB01g01868 Brassica carinata HOM05D001100 ORTHO05D007514 3.8e-15 84.7 61 62.3
Peaxi162Scf00779g00410 Petunia axillaris HOM05D001100 ORTHO05D007514 3.2e-14 81.6 68 57.4
Mapoly0031s0113 Marchantia polymorpha HOM05D001100 ORTHO05D007514 2.8e-10 68.6 82 39.0
Atru.chr10.2023 Acer truncatum HOM05D001100 ORTHO05D007514 5.3e-09 64.3 39 74.4
MCO07G303 Micromonas commoda HOM05D001100 ORTHO05D001503 2.9e-07 58.5 80 42.5
DCAR_028145 Daucus carota HOM05D001100 ORTHO05D007514 3.8e-07 58.2 39 69.2
Dinv40471 Davidia involucrata HOM05D001100 ORTHO05D007514 4.9e-07 57.8 49 61.2
Pp3c14_9660 Physcomitrium patens HOM05D001100 ORTHO05D007514 6.4e-07 57.4 77 37.7
TPR.G32404 Trifolium pratense HOM05D001100 ORTHO05D001503 2.4e-06 55.5 82 36.6
Migut.L00670 Erythranthe guttata HOM05D001100 ORTHO05D001503 3.2e-06 55.1 83 38.6
VMungo0251G1464 Vigna mungo HOM05D001100 ORTHO05D001503 4.2e-06 54.7 82 37.8
CAN.G1181.1 Capsicum annuum HOM05D001100 ORTHO05D001503 5.4e-06 54.3 82 37.8
Lsat_1_v5_gn_7_106201 Lactuca sativa HOM05D001100 ORTHO05D001503 5.4e-06 54.3 80 40.0
Mapoly0068s0099 Marchantia polymorpha HOM05D001100 ORTHO05D001503 5.4e-06 54.3 82 37.8
Migut.M00866 Erythranthe guttata HOM05D001100 ORTHO05D001503 7.1e-06 53.9 80 37.5
MSTRG.6848 Avicennia marina HOM05D001100 ORTHO05D001503 9.3e-06 53.5 82 39.0
COL.COLO4_31551 Corchorus olitorius HOM05D001100 ORTHO05D001503 9.3e-06 53.5 82 35.4
Lalb_Chr05g0218251 Lupinus albus HOM05D001100 ORTHO05D001503 9.3e-06 53.5 82 36.6


User provided reference genes

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