Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 2.4e-90 335.5 168 100.0
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 8.4e-88 327.0 168 97.6
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.1e-84 316.6 168 92.3
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 2.5e-84 315.5 167 93.4
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.6e-83 311.6 167 91.6
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 3.6e-83 311.6 167 91.6
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 6.2e-83 310.8 168 91.7
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 6.2e-83 310.8 168 91.7
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 8.1e-83 310.5 168 89.9
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 1.8e-82 309.3 168 91.1
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 2.4e-82 308.9 167 91.0
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 4.0e-82 308.1 167 90.4
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 5.3e-82 307.8 168 89.3
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.5e-81 306.2 168 88.7
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.5e-81 306.2 168 89.3
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 2.0e-81 305.8 168 88.1
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 2.0e-81 305.8 167 89.8
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 2.0e-81 305.8 167 89.8
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 2.6e-81 305.4 168 88.7
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.6e-81 305.4 168 88.7
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.6e-81 305.4 168 88.7
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.6e-81 305.4 168 91.1
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 4.5e-81 304.7 168 87.5
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.5e-81 304.7 168 88.7
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 4.5e-81 304.7 166 88.6
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 5.8e-81 304.3 167 89.2
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 5.8e-81 304.3 168 87.5
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 9.9e-81 303.5 167 88.6
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 9.9e-81 303.5 166 89.2
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.3e-80 303.1 167 88.6
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.7e-80 302.8 167 89.2
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.7e-80 302.8 167 88.6
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 4.9e-80 301.2 167 88.6
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 6.4e-80 300.8 168 86.3
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 6.4e-80 300.8 168 86.9
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 6.4e-80 300.8 167 87.4
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 6.4e-80 300.8 167 88.0
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.4e-79 299.7 167 85.6
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 3.2e-79 298.5 167 87.4
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 3.2e-79 298.5 168 86.9
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 4.2e-79 298.1 166 88.6
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 4.2e-79 298.1 168 86.9
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.2e-78 296.6 167 86.8
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 1.6e-78 296.2 168 85.1
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.6e-78 296.2 167 85.6
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.6e-78 296.2 167 86.8
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 2.7e-78 295.4 168 84.5
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 2.7e-78 295.4 168 85.1
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 4.6e-78 294.7 166 85.5
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 4.6e-78 294.7 168 84.5
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 6.0e-78 294.3 167 83.8
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 6.0e-78 294.3 167 85.6
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 7.9e-78 293.9 166 85.5
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.9e-78 293.9 185 80.5
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.9e-78 293.9 185 80.5
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.3e-77 293.1 185 80.0
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.3e-77 293.1 168 84.5
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 1.8e-77 292.7 166 87.3
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 2.3e-77 292.4 168 84.5
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 2.3e-77 292.4 184 81.0
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 3.9e-77 291.6 167 84.4
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 5.1e-77 291.2 167 85.6
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.5e-76 289.7 167 84.4
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 1.9e-76 289.3 167 84.4
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.9e-76 289.3 168 84.5
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 3.3e-76 288.5 167 85.6
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 4.3e-76 288.1 167 84.4
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.6e-76 287.7 167 83.8
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 2.8e-75 285.4 167 82.0
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 3.7e-75 285.0 167 83.2
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 3.7e-75 285.0 149 93.3
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.8e-75 284.6 167 83.2
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 6.2e-75 284.3 167 83.2
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 6.2e-75 284.3 167 85.6
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 8.1e-75 283.9 180 77.2
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.4e-74 283.1 190 76.3
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 2.4e-74 282.3 168 80.4
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 3.1e-74 282.0 167 82.0
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 3.1e-74 282.0 166 84.9
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 4.0e-74 281.6 224 67.0
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 5.3e-74 281.2 167 82.6
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 1.2e-73 280.0 149 91.3
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.5e-73 279.6 194 73.2
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.5e-73 279.6 205 70.2
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.5e-73 279.6 167 83.2
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 2.6e-73 278.9 168 78.6
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 3.4e-73 278.5 149 88.6
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 3.4e-73 278.5 167 83.2
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 3.4e-73 278.5 149 91.9
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.8e-73 277.7 167 80.8
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 5.8e-73 277.7 149 89.9
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.6e-73 277.3 167 80.2
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.8e-72 275.0 143 93.7
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 6.5e-72 274.2 168 78.0
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 6.5e-72 274.2 148 89.2
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 1.4e-71 273.1 167 80.8
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.9e-71 272.7 213 68.1
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 3.2e-71 271.9 167 80.2
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 3.2e-71 271.9 168 75.0
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.6e-70 269.6 157 85.4
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.5e-70 268.5 157 85.4
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 7.9e-70 267.3 168 75.6
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 3.0e-69 265.4 166 78.9
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 5.1e-69 264.6 145 88.3
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 6.7e-69 264.2 163 79.8
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 8.7e-69 263.8 147 86.4
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 2.5e-68 262.3 154 83.1
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 2.1e-67 259.2 168 73.2
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 2.8e-67 258.8 177 76.3
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 3.7e-67 258.5 169 77.5
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 6.3e-67 257.7 152 83.6
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 8.2e-67 257.3 167 76.0
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 5.3e-66 254.6 238 59.2
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.5e-65 253.1 169 74.0
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 3.4e-65 251.9 149 82.6
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 9.3e-63 243.8 124 92.7
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 2.1e-62 242.7 124 93.5
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 1.8e-61 239.6 149 78.5
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 6.7e-61 237.7 156 78.2
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 8.7e-61 237.3 169 71.0
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 3.3e-60 235.3 160 74.4
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 4.3e-60 235.0 168 74.4
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 1.6e-59 233.0 123 87.8
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.2e-59 232.6 152 75.7
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 1.8e-58 229.6 166 73.5
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 2.9e-56 222.2 168 68.5
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.4e-55 219.9 132 81.8
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-55 218.8 166 70.5
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 9.4e-55 217.2 122 88.5
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.0e-53 213.8 155 69.0
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.4e-53 213.4 121 88.4
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 1.8e-53 213.0 121 87.6
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 1.8e-53 213.0 121 87.6
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 2.3e-53 212.6 189 57.7
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 2.3e-53 212.6 122 85.2
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 3.9e-53 211.8 121 86.8
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 1.5e-52 209.9 123 87.0
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 2.5e-52 209.1 123 85.4
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 7.4e-52 207.6 155 71.6
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 6.9e-50 201.1 141 74.5
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.5e-49 199.9 158 70.9
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.4e-47 193.4 133 70.7
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 8.2e-43 177.6 106 85.8
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 4.1e-42 175.3 90 87.8
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 2.9e-40 169.1 90 91.1
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.0e-38 161.0 96 87.5
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 4.5e-33 145.2 83 89.2
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 9.4e-31 137.5 112 62.5
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 9.8e-28 127.5 73 90.4
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 2.2e-27 126.3 87 70.1
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-26 124.0 82 75.6
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.4e-26 123.6 99 62.6
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 1.6e-25 120.2 103 63.1
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.1e-23 114.0 78 69.2
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.1e-23 114.0 75 76.0
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.6e-22 109.0 74 73.0
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.9e-19 98.6 63 77.8
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.2e-17 94.0 65 75.4
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 1.3e-16 90.5 153 36.6
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 2.3e-16 89.7 130 39.2
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-14 84.0 49 87.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-14 84.0 49 87.8
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.8e-13 80.1 44 79.5
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 8.9e-13 77.8 157 36.9
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-12 77.4 108 49.1
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.2e-10 69.3 38 78.9


User provided reference genes

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