Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p067737 Quercus lobata HOM05D040500 ORTHO05D337860 1.4e-158 562.8 268 100.0
QL03p046191 Quercus lobata HOM05D040500 ORTHO05D338192 1.9e-102 376.3 221 84.2
QL01p016827 Quercus lobata HOM05D004351 ORTHO05D005196 2.8e-08 63.5 125 37.6
Medtr5g089200 Medicago truncatula HOM05D004351 ORTHO05D005196 3.6e-08 63.2 125 36.8
CANSAT80G2609 Cannabis sativa HOM05D004351 ORTHO05D005196 4.7e-08 62.8 125 36.8
Phvul.008G202200 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 8.0e-08 62.0 125 36.8
TWI31G0625 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 8.0e-08 62.0 125 37.6
TWI79G1476 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 8.0e-08 62.0 125 38.4
Gorai.004G014900 Gossypium raimondii HOM05D004351 ORTHO05D005196 1.0e-07 61.6 149 33.6
Prupe.4G264100 Prunus persica HOM05D004351 ORTHO05D005196 1.0e-07 61.6 125 36.8
QL05p016402 Quercus lobata HOM05D004351 ORTHO05D005196 1.0e-07 61.6 115 38.3
Cfa009891 Carpinus fangiana HOM05D004351 ORTHO05D005196 1.8e-07 60.8 125 36.0
CiPaw.13G149200 Carya illinoinensis HOM05D004351 ORTHO05D005196 1.8e-07 60.8 93 43.0
Gohir.A08G010200 Gossypium hirsutum HOM05D004351 ORTHO05D005196 1.8e-07 60.8 115 38.3
AL6G22990 Arabidopsis lyrata HOM05D004351 ORTHO05D005196 2.3e-07 60.5 125 36.0
Cfa009892 Carpinus fangiana HOM05D004351 ORTHO05D005196 3.1e-07 60.1 115 37.4
Prupe.4G264000 Prunus persica HOM05D004351 ORTHO05D005196 3.1e-07 60.1 125 36.0
A10p25600 Brassica napus HOM05D004351 ORTHO05D005196 4.0e-07 59.7 93 43.0
CARHR200920 Cardamine hirsuta HOM05D004351 ORTHO05D005196 4.0e-07 59.7 125 35.2
MD03G1164800 Malus domestica HOM05D004351 ORTHO05D005196 4.0e-07 59.7 125 36.0
LjContig00564g0010016 Lotus japonicus HOM05D004351 ORTHO05D005196 5.2e-07 59.3 115 37.4
AT5G12200 Arabidopsis thaliana HOM05D004351 ORTHO05D005196 6.8e-07 58.9 125 35.2
CAN.G468.6 Capsicum annuum HOM05D004351 ORTHO05D005196 6.8e-07 58.9 125 36.0
DCAR_023830 Daucus carota HOM05D004351 ORTHO05D005196 6.8e-07 58.9 93 41.9
BcaNung06879 Brassica carinata HOM05D004351 ORTHO05D005196 8.9e-07 58.5 93 41.9
C09p64690 Brassica napus HOM05D004351 ORTHO05D005196 8.9e-07 58.5 93 41.9
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 8.9e-07 58.5 93 41.9
BraA10t44627Z Brassica rapa HOM05D004351 ORTHO05D005196 8.9e-07 58.5 93 41.9
Nitab4.5_0006764g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 8.9e-07 58.5 93 41.9
Nitab4.5_0009266g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 8.9e-07 58.5 93 41.9
Sc09g0005690 Simmondsia chinensis HOM05D004351 ORTHO05D005196 8.9e-07 58.5 112 37.5
Ciclev10014772m.g Citrus clementina HOM05D004351 ORTHO05D005196 1.2e-06 58.2 125 35.2
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 1.2e-06 58.2 115 36.5
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 1.2e-06 58.2 125 34.4
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 1.2e-06 58.2 125 34.4
PGR119G2369 Punica granatum HOM05D004351 ORTHO05D005196 1.2e-06 58.2 115 36.5
Sed0012563 Sechium edule HOM05D004351 ORTHO05D005196 1.2e-06 58.2 115 37.4
Cpa.g.sc34.180 Carica papaya HOM05D004351 ORTHO05D005196 1.5e-06 57.8 124 34.7
CiPaw.14G111600 Carya illinoinensis HOM05D004351 ORTHO05D005196 1.5e-06 57.8 83 43.4
Dinv15025 Davidia involucrata HOM05D004351 ORTHO05D005196 1.5e-06 57.8 101 37.6
Migut.D00673 Erythranthe guttata HOM05D004351 ORTHO05D005196 1.5e-06 57.8 83 43.4
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 1.5e-06 57.8 125 34.4
Hma1.2p1_0460F.1_g157460 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 1.5e-06 57.8 93 40.9
Sp6g31440 Schrenkiella parvula HOM05D004351 ORTHO05D005196 1.5e-06 57.8 93 43.0
Actinidia06976 Actinidia chinensis HOM05D004351 ORTHO05D005196 2.0e-06 57.4 93 40.9
Carub.0006s1070 Capsella rubella HOM05D004351 ORTHO05D005196 2.0e-06 57.4 125 35.2
Ca_06202_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 2.0e-06 57.4 115 35.7
Ca_06205_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 2.0e-06 57.4 115 35.7
Haze_23254 Corylus avellana HOM05D004351 ORTHO05D005196 2.0e-06 57.4 115 36.5
Glyma.14G036000 Glycine max HOM05D004351 ORTHO05D005196 2.0e-06 57.4 115 36.5
HanXRQChr13g0418801 Helianthus annuus HOM05D004351 ORTHO05D005196 2.0e-06 57.4 93 40.9
Oeu013460.1 Olea europaea HOM05D004351 ORTHO05D005196 2.0e-06 57.4 93 41.9
PGR119G0622 Punica granatum HOM05D004351 ORTHO05D005196 2.0e-06 57.4 115 34.8
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 2.0e-06 57.4 93 40.9
Solyc11g064920.2 Solanum lycopersicum HOM05D004351 ORTHO05D005196 2.0e-06 57.4 93 40.9
Sopen11g024720 Solanum pennellii HOM05D004351 ORTHO05D005196 2.0e-06 57.4 93 40.9
THA.LOC104811202 Tarenaya hassleriana HOM05D004351 ORTHO05D005196 2.0e-06 57.4 115 37.4
Thecc.09G247500 Theobroma cacao HOM05D004351 ORTHO05D005196 2.0e-06 57.4 115 35.7
Actinidia24469 Actinidia chinensis HOM05D004351 ORTHO05D005196 2.6e-06 57.0 93 39.8
ClCG02G022760 Citrullus lanatus HOM05D004351 ORTHO05D005196 2.6e-06 57.0 115 36.5
FvH4_3g27770 Fragaria vesca HOM05D004351 ORTHO05D005196 2.6e-06 57.0 93 40.9
FAN11G3899 Fragaria x ananassa HOM05D004351 ORTHO05D005196 2.6e-06 57.0 93 40.9
Hma1.2p1_0460F.1_g157450 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 2.6e-06 57.0 93 39.8
RcHm_v2.0_Chr5g0050371 Rosa chinensis HOM05D004351 ORTHO05D005196 2.6e-06 57.0 93 40.9
GSVIVG01037327001 Vitis vinifera HOM05D004351 ORTHO05D005196 2.6e-06 57.0 93 40.9
Atru.chr3.3000 Acer truncatum HOM05D004351 ORTHO05D005196 3.4e-06 56.6 94 39.4
COL.COLO4_24484 Corchorus olitorius HOM05D004351 ORTHO05D005196 3.4e-06 56.6 115 35.7
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 3.4e-06 56.6 93 40.9
Thhalv10013212m.g Eutrema salsugineum HOM05D004351 ORTHO05D005196 3.4e-06 56.6 93 41.9
Glyma.15G055500 Glycine max HOM05D004351 ORTHO05D005196 3.4e-06 56.6 107 36.4
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 3.4e-06 56.6 93 40.9
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 3.4e-06 56.6 115 37.4
CSS0023003 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 4.4e-06 56.2 83 43.4
Glyma.02G278600 Glycine max HOM05D004351 ORTHO05D005196 4.4e-06 56.2 115 35.7
Medtr5g089280 Medicago truncatula HOM05D004351 ORTHO05D005196 4.4e-06 56.2 107 36.4
Rhsim13G0210300 Rhododendron simsii HOM05D004351 ORTHO05D005196 4.4e-06 56.2 94 40.4
Dinv36161 Davidia involucrata HOM05D004351 ORTHO05D005196 5.8e-06 55.8 83 42.2
FAN21G2561 Fragaria x ananassa HOM05D004351 ORTHO05D005196 5.8e-06 55.8 93 39.8
Gohir.D08G020300 Gossypium hirsutum HOM05D004351 ORTHO05D005196 5.8e-06 55.8 115 36.5
LjContig00564g0013946 Lotus japonicus HOM05D004351 ORTHO05D005196 5.8e-06 55.8 83 42.2
Psat0s6670g0080 Pisum sativum HOM05D004351 ORTHO05D005196 5.8e-06 55.8 140 30.7
TPR.G16392 Trifolium pratense HOM05D004351 ORTHO05D005196 5.8e-06 55.8 83 42.2
VMungo0540G1132 Vigna mungo HOM05D004351 ORTHO05D005196 5.8e-06 55.8 107 35.5
MELO3C014554.2 Cucumis melo HOM05D004351 ORTHO05D005196 7.5e-06 55.5 115 35.7
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 7.5e-06 55.5 93 39.8
TAR636G2603 Trochodendron aralioides HOM05D004351 ORTHO05D005196 7.5e-06 55.5 93 39.8
MSTRG.18468 Avicennia marina HOM05D004351 ORTHO05D005196 9.8e-06 55.1 83 42.2
vmacro04976 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 9.8e-06 55.1 83 42.2
VMungo0647G2253 Vigna mungo HOM05D004351 ORTHO05D005196 9.8e-06 55.1 84 40.5


User provided reference genes

Program Settings