Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p059673 Quercus lobata HOM05D001158 ORTHO05D000964 2.5e-245 851.7 423 100.0
QL11p006142 Quercus lobata HOM05D198452 ORTHO05D337003 3.9e-25 120.2 69 85.5
QL04p004261 Quercus lobata HOM05D000073 ORTHO05D000033 8.2e-23 112.5 97 63.9
QL08p059642 Quercus lobata HOM05D001158 ORTHO05D000964 6.9e-22 109.4 60 90.0
QL02p077442 Quercus lobata HOM05D002296 ORTHO05D002360 9.0e-22 109.0 179 46.9
QL11p010050 Quercus lobata HOM05D000005 ORTHO05D000012 9.0e-22 109.0 55 98.2
CiPaw.02G184700 Carya illinoinensis HOM05D001158 ORTHO05D000964 5.9e-21 106.3 60 81.7
CiPaw.01G288200 Carya illinoinensis HOM05D001158 ORTHO05D000964 5.5e-19 99.8 60 78.3
Cfa001467 Carpinus fangiana HOM05D001158 ORTHO05D000964 1.2e-18 98.6 60 75.0
Haze_17075 Corylus avellana HOM05D001158 ORTHO05D000964 2.7e-18 97.4 60 73.3
QL02p070172 Quercus lobata HOM05D000707 ORTHO05D004608 4.3e-16 90.1 70 71.4
Lalb_Chr17g0346221 Lupinus albus HOM05D001158 ORTHO05D000964 7.4e-16 89.4 57 68.4
Dinv03041 Davidia involucrata HOM05D001158 ORTHO05D000964 1.3e-15 88.6 57 71.9
Phvul.008G232700 Phaseolus vulgaris HOM05D001158 ORTHO05D000964 4.8e-15 86.7 61 63.9
DCAR_011712 Daucus carota HOM05D001158 ORTHO05D000964 8.2e-15 85.9 57 66.7
Hma1.2p1_0953F.1_g241140 Hydrangea macrophylla HOM05D001158 ORTHO05D000964 1.1e-14 85.5 57 61.4
Manes.07G116900 Manihot esculenta HOM05D001158 ORTHO05D000964 1.1e-14 85.5 58 63.8
Glyma.02G247900 Glycine max HOM05D001158 ORTHO05D000964 1.8e-14 84.7 57 68.4
MD07G1199800 Malus domestica HOM05D001158 ORTHO05D000964 1.8e-14 84.7 60 63.3
HanXRQChr07g0201321 Helianthus annuus HOM05D001158 ORTHO05D000964 2.4e-14 84.3 57 61.4
Prupe.2G236500 Prunus persica HOM05D001158 ORTHO05D000964 2.4e-14 84.3 60 61.7
arahy.Tifrunner.gnm1.ann1.WV03GU Arachis hypogaea HOM05D001158 ORTHO05D000964 3.1e-14 84.0 60 60.0
QL05p086153 Quercus lobata HOM05D000073 ORTHO05D000033 3.1e-14 84.0 64 68.8
VMungo0647G1461 Vigna mungo HOM05D001158 ORTHO05D000964 3.1e-14 84.0 57 64.9
Dinv26024 Davidia involucrata HOM05D001158 ORTHO05D000964 5.3e-14 83.2 57 64.9
TPR.G3507 Trifolium pratense HOM05D001158 ORTHO05D000964 5.3e-14 83.2 57 66.7
arahy.Tifrunner.gnm1.ann1.LPK9E2 Arachis hypogaea HOM05D001158 ORTHO05D000964 6.9e-14 82.8 57 59.6
VMungo0647G2054 Vigna mungo HOM05D001158 ORTHO05D000964 6.9e-14 82.8 57 64.9
RhsimUnG0042000 Rhododendron simsii HOM05D001158 ORTHO05D000964 9.1e-14 82.4 59 64.4
RcHm_v2.0_Chr1g0367731 Rosa chinensis HOM05D001158 ORTHO05D000964 1.2e-13 82.0 60 60.0
QL02p096523 Quercus lobata HOM05D000109 ORTHO05D000210 1.5e-13 81.6 140 42.9
Phvul.008G232800 Phaseolus vulgaris HOM05D001158 ORTHO05D000964 2.0e-13 81.3 57 64.9
Sabra10G0156700 Salix brachista HOM05D001158 ORTHO05D000964 2.0e-13 81.3 57 66.7
Thecc.10G040600 Theobroma cacao HOM05D001158 ORTHO05D000964 2.0e-13 81.3 57 66.7
Glyma.14G068400 Glycine max HOM05D001158 ORTHO05D000964 2.6e-13 80.9 60 63.3
LjContig00141g0001022 Lotus japonicus HOM05D001158 ORTHO05D000964 2.6e-13 80.9 57 64.9
QL04p059745 Quercus lobata HOM05D000273 ORTHO05D000198 2.6e-13 80.9 55 70.9
QL93p1873_0082 Quercus lobata HOM05D001888 ORTHO05D001842 2.6e-13 80.9 67 61.2
GSVIVG01016533001 Vitis vinifera HOM05D001158 ORTHO05D000964 2.6e-13 80.9 57 61.4
Medtr5g079890 Medicago truncatula HOM05D001158 ORTHO05D000964 3.4e-13 80.5 60 61.7
Medtr5g079880 Medicago truncatula HOM05D001158 ORTHO05D000964 4.5e-13 80.1 57 61.4
ClCG09G019700 Citrullus lanatus HOM05D001158 ORTHO05D000964 5.9e-13 79.7 57 66.7
Sabra15G0062800 Salix brachista HOM05D001158 ORTHO05D000964 5.9e-13 79.7 57 66.7
vmacro07177 Vaccinium macrocarpon HOM05D001158 ORTHO05D000964 5.9e-13 79.7 60 60.0
Ca_05893_v3 Cicer arietinum L. HOM05D001158 ORTHO05D000964 7.7e-13 79.3 60 61.7
Potri.010G203000 Populus trichocarpa HOM05D001158 ORTHO05D000964 7.7e-13 79.3 57 66.7
Potri.010G203100 Populus trichocarpa HOM05D001158 ORTHO05D000964 7.7e-13 79.3 57 64.9
Aqoxy4G02888 Aquilegia oxysepala HOM05D001158 ORTHO05D000964 1.0e-12 79.0 57 61.4
CsaV3_5G026720 Cucumis sativus L. HOM05D001158 ORTHO05D000964 1.0e-12 79.0 57 68.4
ECA238G1861 Erigeron canadensis HOM05D001158 ORTHO05D000964 1.3e-12 78.6 57 57.9
Eucgr.J00003 Eucalyptus grandis HOM05D001158 ORTHO05D000964 1.7e-12 78.2 57 66.7
Peaxi162Scf00760g00325 Petunia axillaris HOM05D001158 ORTHO05D000964 1.7e-12 78.2 57 63.2
PGR044G0934 Punica granatum HOM05D001158 ORTHO05D000964 1.7e-12 78.2 57 59.6
FvH4_7g22610 Fragaria vesca HOM05D001158 ORTHO05D000964 2.2e-12 77.8 60 55.0
FAN01G3010 Fragaria x ananassa HOM05D001158 ORTHO05D000964 2.2e-12 77.8 60 55.0
FAN03G0977 Fragaria x ananassa HOM05D001158 ORTHO05D000964 2.2e-12 77.8 60 55.0
FAN06G3401 Fragaria x ananassa HOM05D001158 ORTHO05D000964 2.2e-12 77.8 60 55.0
Lalb_Chr17g0346211 Lupinus albus HOM05D001158 ORTHO05D000964 2.2e-12 77.8 57 63.2
Solyc04g011540.4 Solanum lycopersicum HOM05D001158 ORTHO05D000964 2.9e-12 77.4 57 59.6
Atru.chr12.438 Acer truncatum HOM05D001158 ORTHO05D000964 3.8e-12 77.0 59 64.4
MELO3C021623.2 Cucumis melo HOM05D001158 ORTHO05D000964 3.8e-12 77.0 57 66.7
Glyma.02G248000 Glycine max HOM05D001158 ORTHO05D000964 3.8e-12 77.0 60 60.0
CANSAT56G0809 Cannabis sativa HOM05D001158 ORTHO05D000964 5.0e-12 76.6 57 57.9
Ca_05892_v3 Cicer arietinum L. HOM05D001158 ORTHO05D000964 5.0e-12 76.6 60 58.3
TWI38G1521 Tripterygium wilfordii HOM05D001158 ORTHO05D000964 5.0e-12 76.6 57 61.4
FAN03G2312 Fragaria x ananassa HOM05D001158 ORTHO05D000964 8.5e-12 75.9 60 53.3
PGSC0003DMG400027742 Solanum tuberosum HOM05D001158 ORTHO05D000964 8.5e-12 75.9 60 58.3
FAN01G1962 Fragaria x ananassa HOM05D001158 ORTHO05D000964 1.4e-11 75.1 60 53.3
Glyma.02G248100 Glycine max HOM05D001158 ORTHO05D000964 1.4e-11 75.1 56 62.5
HanXRQChr07g0201311 Helianthus annuus HOM05D001158 ORTHO05D000964 1.4e-11 75.1 57 59.6
Atru.chr12.437 Acer truncatum HOM05D001158 ORTHO05D000964 1.9e-11 74.7 59 62.7
MELO3C021622.2 Cucumis melo HOM05D001158 ORTHO05D000964 1.9e-11 74.7 57 63.2
Glyma.11G219000 Glycine max HOM05D001158 ORTHO05D000964 1.9e-11 74.7 57 61.4
Psat2g041360 Pisum sativum HOM05D001158 ORTHO05D000964 1.9e-11 74.7 61 57.4
Nitab4.5_0010166g0030 Nicotiana tabacum HOM05D001158 ORTHO05D000964 2.5e-11 74.3 57 61.4
Duzib114G0179 Durio zibethinus HOM05D001158 ORTHO05D000964 3.2e-11 73.9 57 63.2
Glyma.18G038400 Glycine max HOM05D001158 ORTHO05D000964 3.2e-11 73.9 57 61.4
HanXRQChr07g0201291 Helianthus annuus HOM05D001158 ORTHO05D000964 3.2e-11 73.9 57 52.6
Actinidia02942 Actinidia chinensis HOM05D000370 ORTHO05D001366 4.2e-11 73.6 50 66.0
Sopen04g005720 Solanum pennellii HOM05D001158 ORTHO05D000964 4.2e-11 73.6 60 55.0
Cc02_g07750 Coffea canephora HOM05D001158 ORTHO05D000964 9.4e-11 72.4 57 56.1
PSO339G3661 Papaver somniferum HOM05D001158 ORTHO05D000964 9.4e-11 72.4 59 59.3
DCAR_027610 Daucus carota HOM05D001158 ORTHO05D000964 1.6e-10 71.6 58 56.9
PSO384G1026 Papaver somniferum HOM05D001158 ORTHO05D000964 1.6e-10 71.6 59 59.3
Sed0001831 Sechium edule HOM05D001158 ORTHO05D000964 1.6e-10 71.6 58 60.3
CANSAT56G0861 Cannabis sativa HOM05D001158 ORTHO05D000964 2.1e-10 71.2 124 39.5
CANSAT56G2755 Cannabis sativa HOM05D001158 ORTHO05D000964 2.1e-10 71.2 124 39.5
Lsat_1_v5_gn_2_119260 Lactuca sativa HOM05D001158 ORTHO05D000964 2.1e-10 71.2 58 55.2
Gohir.D10G229600 Gossypium hirsutum HOM05D001158 ORTHO05D000964 2.7e-10 70.9 57 59.6
Gorai.011G262500 Gossypium raimondii HOM05D001158 ORTHO05D000964 3.6e-10 70.5 57 57.9
FAN10G3581 Fragaria x ananassa HOM05D001158 ORTHO05D000964 4.7e-10 70.1 70 47.1
Gohir.D10G230000 Gossypium hirsutum HOM05D001158 ORTHO05D000964 4.7e-10 70.1 57 57.9
Gohir.A10G220100 Gossypium hirsutum HOM05D001158 ORTHO05D000964 1.8e-09 68.2 57 56.1
MBI05_g28391_MAGBIO Magnolia biondii HOM05D001158 ORTHO05D000964 1.8e-09 68.2 58 56.9
PSO339G3324 Papaver somniferum HOM05D001158 ORTHO05D000964 1.8e-09 68.2 59 57.6
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 3.0e-09 67.4 57 54.4
CANSAT56G3988 Cannabis sativa HOM05D001158 ORTHO05D000964 3.9e-09 67.0 57 59.6
Oeu053462.1 Olea europaea HOM05D001158 ORTHO05D000964 3.9e-09 67.0 57 56.1
Sp5g07000 Schrenkiella parvula HOM05D001158 ORTHO05D000964 3.9e-09 67.0 57 52.6
AUR62039370 Chenopodium quinoa HOM05D001158 ORTHO05D000964 5.1e-09 66.6 58 53.4
Lalb_Chr10g0104551 Lupinus albus HOM05D001158 ORTHO05D000964 5.1e-09 66.6 42 73.8
Peaxi162Scf00658g00838 Petunia axillaris HOM05D001158 ORTHO05D000964 5.1e-09 66.6 57 54.4
VMungo0647G0930 Vigna mungo HOM05D001158 ORTHO05D000964 5.1e-09 66.6 46 67.4
CANSAT56G1341 Cannabis sativa HOM05D001158 ORTHO05D000964 6.7e-09 66.2 57 59.6
Lj8C83G14 Lonicera japonica HOM05D000370 ORTHO05D001366 6.7e-09 66.2 44 63.6
Psat2g041560 Pisum sativum HOM05D001158 ORTHO05D000964 6.7e-09 66.2 46 65.2
Ciclev10032979m.g Citrus clementina HOM05D001158 ORTHO05D000964 8.8e-09 65.9 57 56.1
AUR62012096 Chenopodium quinoa HOM05D001158 ORTHO05D000964 1.1e-08 65.5 58 51.7
CAN.G786.7 Capsicum annuum HOM05D001158 ORTHO05D000964 2.6e-08 64.3 42 61.9
Cpa.g.sc1.414 Carica papaya HOM05D001158 ORTHO05D000964 2.6e-08 64.3 58 53.4
Nn2g13359 Nelumbo nucifera HOM05D001158 ORTHO05D000964 2.6e-08 64.3 58 55.2
Phvul.008G232600 Phaseolus vulgaris HOM05D001158 ORTHO05D000964 3.3e-08 63.9 50 60.0
A04p04460 Brassica napus HOM05D001158 ORTHO05D000964 7.4e-08 62.8 94 36.2
BraA04t16157Z Brassica rapa HOM05D001158 ORTHO05D000964 7.4e-08 62.8 94 36.2
Atru.chr12.435 Acer truncatum HOM05D000370 ORTHO05D001366 9.7e-08 62.4 44 59.1
Cpa.g.sc1.415 Carica papaya HOM05D001158 ORTHO05D000964 9.7e-08 62.4 57 52.6
Thhalv10010786m.g Eutrema salsugineum HOM05D001158 ORTHO05D000964 9.7e-08 62.4 57 49.1
Nn2g11123 Nelumbo nucifera HOM05D001158 ORTHO05D000964 9.7e-08 62.4 58 50.0
BcaB01g00097 Brassica carinata HOM05D001158 ORTHO05D000964 1.3e-07 62.0 57 49.1
BcaC02g09760 Brassica carinata HOM05D001158 ORTHO05D000964 1.3e-07 62.0 57 47.4
BcaC07g39866 Brassica carinata HOM05D001158 ORTHO05D000964 1.3e-07 62.0 57 49.1
A09p48410 Brassica napus HOM05D001158 ORTHO05D000964 1.3e-07 62.0 57 49.1
C04p36880 Brassica napus HOM05D001158 ORTHO05D000964 1.3e-07 62.0 57 47.4
BolC4t25254H Brassica oleracea HOM05D001158 ORTHO05D000964 1.3e-07 62.0 57 47.4
BraA09t40293Z Brassica rapa HOM05D001158 ORTHO05D000964 1.3e-07 62.0 57 49.1
Gorai.011G262100 Gossypium raimondii HOM05D001158 ORTHO05D000964 1.7e-07 61.6 42 66.7
Hund16082 Selenicereus undatus HOM05D001158 ORTHO05D000964 1.7e-07 61.6 60 53.3
TPR.G3464 Trifolium pratense HOM05D001158 ORTHO05D000964 1.7e-07 61.6 44 61.4
Nn2g11124 Nelumbo nucifera HOM05D001158 ORTHO05D000964 2.2e-07 61.2 57 49.1
Sabra10G0156600 Salix brachista HOM05D000370 ORTHO05D001366 2.8e-07 60.8 52 59.6
HPP92_019354 Vanilla planifolia HOM05D001158 ORTHO05D000964 2.8e-07 60.8 61 47.5
AL5G36620 Arabidopsis lyrata HOM05D001158 ORTHO05D000964 4.8e-07 60.1 57 43.9
AT3G55470 Arabidopsis thaliana HOM05D001158 ORTHO05D000964 4.8e-07 60.1 57 43.9
BcaB02g08418 Brassica carinata HOM05D001158 ORTHO05D000964 4.8e-07 60.1 94 35.1
QL03p063634 Quercus lobata HOM05D001888 ORTHO05D001842 4.8e-07 60.1 43 67.4
Aa31LG10G10510 Aethionema arabicum HOM05D001158 ORTHO05D000964 6.3e-07 59.7 59 47.5
Carub.0005s2219 Capsella rubella HOM05D001158 ORTHO05D000964 6.3e-07 59.7 57 45.6
CARHR165510 Cardamine hirsuta HOM05D001158 ORTHO05D000964 8.2e-07 59.3 67 40.3
Os01g0841700 Oryza sativa ssp. japonica HOM05D001158 ORTHO05D000964 8.2e-07 59.3 63 41.3
SEGI_00426 Sequoiadendron giganteum HOM05D001158 ORTHO05D000964 8.2e-07 59.3 47 55.3
CsaV3_5G026730 Cucumis sativus L. HOM05D000370 ORTHO05D001366 1.4e-06 58.5 53 54.7
Sabra08G0041200 Salix brachista HOM05D001158 ORTHO05D000964 1.8e-06 58.2 41 68.3
Aqoxy4G02886 Aquilegia oxysepala HOM05D001158 ORTHO05D000964 2.4e-06 57.8 63 46.0
PSO541G1198 Papaver somniferum HOM05D001158 ORTHO05D000964 2.4e-06 57.8 57 47.4
PSO541G4880 Papaver somniferum HOM05D001158 ORTHO05D000964 3.1e-06 57.4 57 47.4
BolC8t50688H Brassica oleracea HOM05D001158 ORTHO05D000964 4.1e-06 57.0 59 47.5
CARHR165500 Cardamine hirsuta HOM05D001158 ORTHO05D000964 5.3e-06 56.6 53 47.2
Nitab4.5_0014068g0010 Nicotiana tabacum HOM05D001158 ORTHO05D000964 5.3e-06 56.6 32 75.0
Oeu048240.1 Olea europaea HOM05D001158 ORTHO05D000964 5.3e-06 56.6 43 58.1
MD01G1135100 Malus domestica HOM05D001158 ORTHO05D000964 7.0e-06 56.2 41 61.0
PSO675G4373 Papaver somniferum HOM05D001158 ORTHO05D000964 7.0e-06 56.2 57 45.6
CARHR165490 Cardamine hirsuta HOM05D001158 ORTHO05D000964 9.1e-06 55.8 58 44.8


User provided reference genes

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