Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 1.2e-127 459.9 243 100.0
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 8.4e-97 357.5 241 80.5
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 3.5e-95 352.1 242 77.7
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 3.1e-91 339.0 239 77.4
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 2.7e-79 299.3 243 67.1
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 7.9e-79 297.7 241 66.4
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 1.0e-78 297.4 238 70.6
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 1.3e-78 297.0 240 66.7
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 5.1e-78 295.0 242 66.5
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 9.6e-77 290.8 241 63.5
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 1.6e-76 290.0 243 65.4
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 5.3e-75 285.0 242 63.6
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 6.9e-75 284.6 241 63.9
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 2.9e-73 279.3 243 63.0
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 3.8e-73 278.9 243 62.6
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 3.5e-71 272.3 241 60.2
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 4.6e-71 271.9 240 61.7
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.3e-70 270.4 240 61.7
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 5.7e-69 265.0 241 60.6
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 2.8e-68 262.7 241 61.0
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 4.8e-68 261.9 240 60.8
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 6.9e-67 258.1 241 61.8
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 5.9e-66 255.0 245 60.4
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 7.7e-66 254.6 241 59.8
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 1.0e-65 254.2 241 61.0
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 1.0e-65 254.2 241 61.0
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 8.5e-65 251.1 242 57.4
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 1.9e-64 250.0 242 56.6
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 4.2e-64 248.8 246 57.3
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 5.5e-64 248.4 241 56.8
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 2.5e-61 239.6 246 58.5
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 9.7e-61 237.7 245 57.1
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 9.7e-61 237.7 245 60.4
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 3.7e-60 235.7 242 57.4
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 8.2e-60 234.6 237 54.4
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.2e-58 230.7 243 55.1
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 3.4e-58 229.2 221 57.0
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 4.5e-58 228.8 244 54.1
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 7.7e-58 228.0 221 57.9
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 7.7e-58 228.0 224 58.9
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 5.0e-57 225.3 242 52.5
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 6.5e-57 224.9 248 56.5
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 6.5e-57 224.9 244 50.0
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 8.5e-57 224.6 243 53.5
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 8.5e-57 224.6 240 54.6
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 1.1e-56 224.2 240 54.2
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 1.1e-56 224.2 244 54.9
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 3.2e-56 222.6 243 54.3
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 4.2e-56 222.2 243 53.1
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 1.6e-55 220.3 246 52.4
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 4.7e-55 218.8 219 56.6
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 7.9e-55 218.0 244 54.5
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 1.8e-54 216.9 219 56.2
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 3.9e-54 215.7 237 53.2
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 3.9e-54 215.7 244 50.8
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 2.0e-53 213.4 238 52.9
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 3.3e-53 212.6 219 55.7
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 5.7e-53 211.8 242 54.1
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 3.7e-52 209.1 263 49.4
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 3.7e-52 209.1 241 51.5
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 3.1e-51 206.1 244 53.3
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 1.2e-50 204.1 239 49.8
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 2.6e-50 203.0 227 52.9
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 3.5e-50 202.6 127 87.4
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 2.9e-49 199.5 239 49.8
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 3.8e-49 199.1 240 49.6
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 8.5e-49 198.0 240 51.7
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 5.2e-46 188.7 210 52.4
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 6.7e-46 188.3 210 52.4
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.1e-45 187.6 247 49.0
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 1.5e-45 187.2 244 47.5
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 2.0e-45 186.8 241 49.0
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 1.3e-44 184.1 245 47.8
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 2.2e-44 183.3 237 47.7
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 8.2e-44 181.4 237 47.7
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 5.5e-40 168.7 245 47.8
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 9.4e-40 167.9 244 47.5
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 4.7e-39 165.6 246 44.3
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 6.1e-39 165.2 240 45.4
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 6.8e-38 161.8 244 46.3
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 2.6e-37 159.8 166 56.0
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 3.4e-37 159.5 242 44.2
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 5.7e-37 158.7 215 50.7
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 7.5e-37 158.3 264 44.3
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 1.7e-36 157.1 246 44.7
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 1.7e-36 157.1 131 61.8
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 1.7e-36 157.1 225 50.2
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 8.3e-36 154.8 244 43.0
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 1.6e-34 150.6 241 44.0
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 7.7e-34 148.3 218 49.5
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 1.5e-32 144.1 242 43.0
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.6e-31 140.6 212 43.9
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 3.6e-31 139.4 182 47.8
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 8.0e-31 138.3 243 39.5
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 2.6e-29 133.3 243 42.0
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 2.6e-29 133.3 243 42.0
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 7.5e-29 131.7 202 46.0
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 4.8e-28 129.0 244 42.2
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 6.3e-28 128.6 247 41.7
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 6.3e-28 128.6 247 41.7
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 1.4e-27 127.5 261 37.9
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 1.8e-27 127.1 224 42.0
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 4.1e-27 125.9 241 36.9
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 5.4e-27 125.6 251 39.0
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 2.7e-26 123.2 244 39.3
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 4.5e-26 122.5 202 42.6
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 5.9e-26 122.1 243 39.9
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 7.7e-26 121.7 236 38.1
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 1.3e-25 120.9 261 36.4
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 1.1e-24 117.9 242 38.0
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 9.5e-24 114.8 222 39.6
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 9.5e-24 114.8 222 39.6
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 2.8e-23 113.2 198 41.9
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 2.3e-22 110.2 111 60.4
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 2.0e-21 107.1 227 37.9
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 4.9e-20 102.4 233 35.2
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 1.9e-16 90.5 214 35.0
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 2.3e-14 83.6 247 32.4
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 3.4e-13 79.7 208 34.1
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 7.5e-13 78.6 138 39.9
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 9.8e-13 78.2 173 38.2
BolC7t42047H Brassica oleracea HOM05D004468 ORTHO05D008180 1.9e-11 73.9 128 36.7
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 4.1e-11 72.8 114 48.2
BcaC06g35479 Brassica carinata HOM05D000171 ORTHO05D008180 5.4e-11 72.4 80 47.5
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 2.0e-10 70.5 187 33.7
SGA_v2.0_scaffold94G28577 Striga asiatica HOM05D001755 ORTHO05D001665 3.6e-07 59.7 194 27.8
Manes.18G061300 Manihot esculenta HOM05D001755 ORTHO05D001665 4.7e-07 59.3 261 27.6
CDE08G0998 Ceratophyllum demersum HOM05D004468 ORTHO05D011136 1.1e-06 58.2 141 36.9
THA.LOC104806804 Tarenaya hassleriana HOM05D001755 ORTHO05D001665 1.4e-06 57.8 251 25.5
HPP92_004086 Vanilla planifolia HOM05D001755 ORTHO05D001665 3.1e-06 56.6 254 28.0
HPP92_004103 Vanilla planifolia HOM05D001755 ORTHO05D001665 3.1e-06 56.6 254 28.0
Thecc.08G067700 Theobroma cacao HOM05D001755 ORTHO05D001665 5.2e-06 55.8 240 23.3
SEGI_08629 Sequoiadendron giganteum HOM05D001755 ORTHO05D001665 6.8e-06 55.5 51 49.0
Migut.L01931 Erythranthe guttata HOM05D001755 ORTHO05D001665 8.9e-06 55.1 201 27.9


User provided reference genes

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