Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 1.9e-106 391.3 201 100.0
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 1.4e-88 332.0 205 81.5
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 1.4e-69 268.9 227 63.9
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 7.3e-58 229.9 227 56.8
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 1.1e-50 206.1 195 51.8
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 1.4e-48 199.1 212 50.9
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 2.4e-48 198.4 215 51.6
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 1.7e-46 192.2 224 48.7
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 3.8e-46 191.0 216 53.7
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 3.0e-43 181.4 213 49.3
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.5e-42 179.1 175 53.7
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 3.7e-41 174.5 222 48.6
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 4.8e-41 174.1 139 59.7
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 6.2e-41 173.7 235 42.1
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 1.4e-40 172.6 203 48.8
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 3.1e-40 171.4 202 49.0
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 5.3e-40 170.6 174 50.0
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 1.2e-39 169.5 200 47.5
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 2.9e-38 164.9 124 62.1
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 3.8e-38 164.5 200 50.0
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 8.4e-38 163.3 169 51.5
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 1.9e-37 162.2 198 43.4
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 1.2e-36 159.5 216 41.7
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 2.7e-36 158.3 183 47.0
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 4.6e-36 157.5 202 46.0
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 4.6e-36 157.5 198 45.5
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 7.9e-36 156.8 130 56.2
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 7.9e-36 156.8 135 56.3
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 1.0e-35 156.4 158 53.8
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 1.3e-35 156.0 191 46.6
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 3.3e-34 151.4 210 44.8
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 1.6e-33 149.1 193 42.5
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 4.8e-33 147.5 200 44.5
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 5.3e-32 144.1 210 39.5
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 6.9e-32 143.7 166 48.8
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 6.9e-32 143.7 160 51.9
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 1.5e-31 142.5 169 48.5
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 9.3e-29 133.3 196 41.3
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 1.2e-28 132.9 223 38.1
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 6.0e-28 130.6 140 47.9
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.3e-27 129.4 201 37.3
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 1.8e-27 129.0 131 47.3
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 2.3e-27 128.6 208 37.0
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.1e-26 126.3 211 37.9
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 1.9e-26 125.6 160 41.2
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 7.4e-26 123.6 134 46.3
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.6e-25 122.5 140 43.6
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 2.2e-25 122.1 131 48.1
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.8e-25 121.7 197 35.5
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 2.8e-25 121.7 203 36.5
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 8.2e-25 120.2 201 35.8
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 1.4e-24 119.4 140 42.9
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 4.1e-24 117.9 133 50.4
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 4.1e-24 117.9 133 50.4
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 5.3e-24 117.5 131 46.6
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 9.0e-24 116.7 138 44.2
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 2.0e-23 115.5 227 33.9
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 2.6e-23 115.2 140 41.4
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 3.4e-23 114.8 208 34.1
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 7.7e-23 113.6 194 35.6
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 1.3e-22 112.8 189 36.0
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.3e-22 112.8 197 33.0
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 1.3e-22 112.8 204 37.3
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 1.7e-22 112.5 131 44.3
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 1.7e-22 112.5 140 40.0
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 2.2e-22 112.1 140 40.0
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 3.8e-22 111.3 132 43.2
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 5.0e-22 110.9 86 59.3
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 5.0e-22 110.9 135 45.9
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 8.5e-22 110.2 211 36.0
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 1.1e-21 109.8 205 37.1
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 1.4e-21 109.4 190 38.4
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 1.4e-21 109.4 187 36.9
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 1.4e-21 109.4 187 35.3
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 1.9e-21 109.0 208 35.6
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 7.2e-21 107.1 210 34.8
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 7.2e-21 107.1 210 34.8
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.2e-20 106.3 205 34.6
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 1.6e-20 105.9 173 37.6
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.1e-20 105.5 204 35.8
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 1.0e-19 103.2 190 35.3
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 1.8e-19 102.4 131 39.7
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 2.3e-19 102.1 195 34.9
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 2.3e-19 102.1 195 34.9
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 3.3e-18 98.2 193 34.7
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 7.4e-18 97.1 136 39.7
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 9.7e-18 96.7 210 32.9
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 1.3e-17 96.3 139 36.0
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 3.7e-17 94.7 106 42.5
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 6.3e-17 94.0 129 34.9
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 1.8e-16 92.4 143 37.8
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 1.2e-15 89.7 86 51.2
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.3e-14 86.3 112 38.4
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 1.1e-13 83.2 134 32.1
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 2.5e-13 82.0 168 33.9
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 7.2e-13 80.5 79 46.8
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 7.2e-13 80.5 127 36.2
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 3.6e-12 78.2 122 36.9
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 6.1e-12 77.4 138 29.0
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 7.9e-12 77.0 118 36.4
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 3.0e-11 75.1 86 47.7
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.0e-10 72.4 121 33.1
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 9.1e-08 63.5 78 47.4
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 6.5e-06 57.4 73 39.7


User provided reference genes

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