Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.2e-291 1005.7 500 100.0
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.1e-244 849.7 500 84.0
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 9.4e-220 766.9 500 77.0
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 1.4e-215 753.1 500 75.2
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 2.4e-215 752.3 740 56.8
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.6e-214 749.6 500 73.8
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 1.5e-212 743.0 500 73.6
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 3.0e-210 735.3 500 73.8
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 5.9e-206 721.1 500 71.4
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.0e-205 720.3 500 71.2
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 1.0e-205 720.3 500 72.6
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 1.3e-205 719.9 500 71.8
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 2.9e-205 718.8 503 72.4
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 3.8e-205 718.4 500 72.0
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.5e-204 715.7 500 71.4
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 7.3e-204 714.1 500 71.0
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 4.7e-203 711.4 500 70.8
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.8e-202 709.5 398 85.9
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 7.0e-199 697.6 503 69.8
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 7.5e-193 677.6 500 68.2
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 7.5e-193 677.6 502 68.1
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 9.8e-193 677.2 501 68.5
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.9e-192 675.6 502 66.7
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.9e-192 675.6 502 66.7
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.6e-190 669.8 501 66.9
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 2.1e-190 669.5 500 65.6
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.0e-189 667.2 453 72.0
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.0e-189 667.2 501 68.5
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 2.3e-189 666.0 501 67.9
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.1e-188 663.7 500 66.8
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.1e-188 663.7 502 66.9
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.1e-186 657.1 502 66.9
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.1e-186 657.1 502 66.9
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 2.3e-186 656.0 506 66.2
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.1e-186 655.6 502 65.7
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.0e-185 652.9 501 66.1
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 2.4e-183 646.0 500 65.2
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 2.1e-182 642.9 501 64.7
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.7e-181 639.8 398 77.9
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 2.5e-180 636.0 490 65.5
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 2.1e-179 632.9 491 65.8
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 4.0e-178 628.6 490 65.7
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 5.2e-178 628.2 500 63.2
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.2e-177 627.1 500 63.4
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 5.8e-177 624.8 500 63.6
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 2.2e-176 622.9 501 64.9
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.2e-175 619.0 500 62.2
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.2e-174 617.1 474 65.8
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.6e-174 615.1 511 62.0
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 5.1e-173 611.7 500 62.0
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 3.3e-172 609.0 505 62.2
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.2e-171 607.1 409 70.7
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.5e-169 600.1 539 58.6
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 1.7e-168 596.7 473 64.3
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 3.8e-168 595.5 500 61.4
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.4e-167 593.6 450 66.9
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 7.8e-166 587.8 501 59.7
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.3e-165 587.0 500 60.8
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 6.6e-165 584.7 482 61.2
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.5e-164 583.6 469 61.6
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.3e-163 580.5 468 61.3
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.8e-162 576.6 502 58.4
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 4.0e-162 575.5 501 57.9
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 9.9e-161 570.9 508 58.9
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.3e-160 570.5 457 63.7
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.2e-160 569.7 487 60.0
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 2.9e-160 569.3 493 60.9
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 6.4e-160 568.2 501 57.5
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 3.2e-159 565.8 501 57.3
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.6e-158 562.0 506 57.9
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 2.3e-157 559.7 414 67.1
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.0e-157 559.3 502 56.8
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.3e-155 553.9 501 56.9
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.6e-155 553.5 428 67.1
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 4.8e-155 552.0 429 67.1
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 2.4e-154 549.7 430 62.3
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 2.4e-154 549.7 430 62.3
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 2.4e-154 549.7 399 67.7
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 2.4e-154 549.7 490 58.4
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 3.1e-154 549.3 424 67.9
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 4.0e-154 548.9 513 58.7
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 4.0e-154 548.9 430 62.1
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 4.0e-154 548.9 457 60.2
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 4.0e-154 548.9 574 52.4
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.9e-154 548.1 430 66.5
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 9.0e-154 547.7 464 61.4
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.2e-153 547.4 515 56.7
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 3.4e-153 545.8 402 67.4
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 7.6e-153 544.7 437 60.2
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.3e-152 543.9 429 66.7
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.7e-152 543.5 408 68.6
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 2.9e-152 542.7 490 57.6
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 4.9e-152 542.0 490 57.8
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 6.4e-152 541.6 403 64.5
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 1.1e-151 540.8 490 57.6
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.4e-151 540.4 537 54.9
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.9e-151 540.0 503 56.5
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 2.5e-151 539.7 403 63.8
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 3.2e-151 539.3 503 56.9
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 9.3e-151 537.7 403 64.8
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.6e-150 537.0 403 65.0
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 6.0e-150 535.0 445 60.7
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 6.0e-150 535.0 395 66.3
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.0e-149 534.3 428 61.9
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.0e-149 534.3 525 56.6
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 1.0e-149 534.3 397 64.5
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.3e-149 533.9 500 57.4
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 3.0e-149 532.7 506 55.5
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 3.0e-149 532.7 431 61.3
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 3.0e-149 532.7 501 54.7
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 6.7e-149 531.6 492 56.1
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 3.3e-148 529.3 403 62.3
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 4.3e-148 528.9 501 55.1
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 5.7e-148 528.5 403 65.3
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 6.2e-147 525.0 562 52.8
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 8.2e-147 524.6 510 58.0
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.8e-146 523.5 403 62.5
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 2.4e-146 523.1 399 66.7
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 9.0e-146 521.2 374 69.3
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 2.0e-145 520.0 316 77.8
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 4.5e-145 518.8 526 52.1
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.3e-144 517.3 508 52.8
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.9e-143 513.5 498 55.2
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.9e-143 513.5 498 55.2
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.9e-143 513.5 498 55.2
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.5e-143 513.1 376 68.1
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 3.2e-143 512.7 498 54.8
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 3.2e-143 512.7 489 55.8
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 3.2e-143 512.7 472 55.9
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 4.2e-143 512.3 498 54.8
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.2e-142 510.8 403 60.8
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.6e-142 510.4 402 63.7
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.0e-141 507.7 506 54.0
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 5.1e-141 505.4 381 64.8
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 8.2e-139 498.0 501 53.7
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 5.3e-138 495.4 514 53.7
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 8.5e-136 488.0 461 54.4
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 8.8e-133 478.0 605 46.0
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.7e-131 473.8 369 61.8
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 2.2e-128 463.4 401 57.6
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.4e-125 454.1 401 56.9
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 9.7e-124 448.0 390 60.5
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.7e-123 447.2 310 68.7
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 2.1e-118 430.3 402 54.2
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.3e-117 426.8 401 52.9
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 1.2e-113 414.5 375 57.6
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 4.0e-93 346.3 313 56.5
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.3e-87 326.6 219 71.2
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.6e-86 324.3 292 60.3
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 5.4e-82 309.3 266 60.2
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 1.2e-78 298.1 202 68.3
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.1e-77 295.0 234 65.8
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 8.3e-75 285.4 219 60.3
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 7.1e-66 255.8 235 55.3
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 5.1e-64 249.6 311 43.7
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.0e-60 237.7 411 40.9
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 4.2e-50 203.4 302 40.1
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 3.6e-46 190.3 450 32.7
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 3.7e-38 163.7 162 54.3
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 5.8e-36 156.4 263 41.8
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.8e-32 144.8 199 44.7
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.8e-29 134.8 135 53.3
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 3.4e-28 130.6 286 30.8
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 1.7e-27 128.3 119 52.9
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 8.4e-27 125.9 102 61.8
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 8.7e-24 115.9 654 21.7
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 1.6e-22 111.7 122 51.6
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 6.9e-21 106.3 124 48.4
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.8e-16 91.7 104 50.0
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 2.5e-15 87.8 249 31.3
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.1e-09 68.2 51 64.7
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.6e-09 67.4 50 60.0
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 4.7e-09 67.0 336 23.8
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 1.3e-06 58.9 68 48.5


User provided reference genes

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