Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p040615 Quercus lobata HOM05D002576 ORTHO05D002696 4.9e-31 137.1 67 100.0
THA.LOC104819903 Tarenaya hassleriana HOM05D002576 ORTHO05D002696 1.6e-10 68.9 66 56.1
CAN.G1164.33 Capsicum annuum HOM05D002576 ORTHO05D002696 3.7e-10 67.8 37 78.4
Lj4g0002983 Lotus japonicus HOM05D002576 ORTHO05D002696 3.7e-10 67.8 37 83.8
Rhsim02G0130300 Rhododendron simsii HOM05D002576 ORTHO05D002696 3.7e-10 67.8 37 83.8
ClCG08G009370 Citrullus lanatus HOM05D002576 ORTHO05D002696 4.8e-10 67.4 66 56.1
COL.COLO4_31470 Corchorus olitorius HOM05D002576 ORTHO05D002696 4.8e-10 67.4 37 81.1
FvH4_3g09190 Fragaria vesca HOM05D002576 ORTHO05D002696 4.8e-10 67.4 37 81.1
FAN11G2420 Fragaria x ananassa HOM05D002576 ORTHO05D002696 4.8e-10 67.4 37 81.1
FAN16G2037 Fragaria x ananassa HOM05D002576 ORTHO05D002696 4.8e-10 67.4 37 81.1
FAN21G1299 Fragaria x ananassa HOM05D002576 ORTHO05D002696 4.8e-10 67.4 37 81.1
Gohir.A05G161600 Gossypium hirsutum HOM05D002576 ORTHO05D002696 4.8e-10 67.4 37 83.8
Gohir.A06G126800 Gossypium hirsutum HOM05D002576 ORTHO05D002696 4.8e-10 67.4 37 83.8
Gohir.D05G164400 Gossypium hirsutum HOM05D002576 ORTHO05D002696 4.8e-10 67.4 37 83.8
Gohir.D06G131700 Gossypium hirsutum HOM05D002576 ORTHO05D002696 4.8e-10 67.4 37 83.8
Gorai.009G169600 Gossypium raimondii HOM05D002576 ORTHO05D002696 4.8e-10 67.4 37 83.8
Gorai.010G153500 Gossypium raimondii HOM05D002576 ORTHO05D002696 4.8e-10 67.4 37 83.8
RcHm_v2.0_Chr5g0008411 Rosa chinensis HOM05D002576 ORTHO05D002696 4.8e-10 67.4 37 81.1
QL02p100868 Quercus lobata HOM05D002576 ORTHO05D002696 6.2e-10 67.0 37 83.8
BcaNung03428 Brassica carinata HOM05D002576 ORTHO05D002696 8.2e-10 66.6 66 51.5
CAN.G1164.38 Capsicum annuum HOM05D002576 ORTHO05D002696 8.2e-10 66.6 41 70.7
Os05g0557800 Oryza sativa ssp. japonica HOM05D002576 ORTHO05D002696 8.2e-10 66.6 37 81.1
Solyc02g078200.4 Solanum lycopersicum HOM05D002576 ORTHO05D002696 8.2e-10 66.6 37 75.7
Sopen02g023060 Solanum pennellii HOM05D002576 ORTHO05D002696 8.2e-10 66.6 37 75.7
PGSC0003DMG400029725 Solanum tuberosum HOM05D002576 ORTHO05D002696 8.2e-10 66.6 37 75.7
Zm00001eb295500 Zea mays HOM05D002576 ORTHO05D002696 8.2e-10 66.6 37 81.1
Ca_09283_v3 Cicer arietinum L. HOM05D002576 ORTHO05D002696 1.1e-09 66.2 37 81.1
Ciclev10016378m.g Citrus clementina HOM05D002576 ORTHO05D002696 1.1e-09 66.2 37 81.1
Medtr7g111750 Medicago truncatula HOM05D002576 ORTHO05D002696 1.1e-09 66.2 37 81.1
Psat5g032360 Pisum sativum HOM05D002576 ORTHO05D002696 1.1e-09 66.2 37 81.1
TPR.G1610 Trifolium pratense HOM05D002576 ORTHO05D002696 1.1e-09 66.2 37 81.1
HPP92_024649 Vanilla planifolia HOM05D002576 ORTHO05D002696 1.1e-09 66.2 37 78.4
HPP92_024654 Vanilla planifolia HOM05D002576 ORTHO05D002696 1.1e-09 66.2 37 78.4
Zm00001eb343340 Zea mays HOM05D002576 ORTHO05D002696 1.1e-09 66.2 37 78.4
BcaC09g51879 Brassica carinata HOM05D002576 ORTHO05D002696 1.4e-09 65.9 41 70.7
A01p07260 Brassica napus HOM05D002576 ORTHO05D002696 1.4e-09 65.9 41 70.7
C01p08020 Brassica napus HOM05D002576 ORTHO05D002696 1.4e-09 65.9 41 70.7
BolC1t00791H Brassica oleracea HOM05D002576 ORTHO05D002696 1.4e-09 65.9 41 70.7
BraA01t00675Z Brassica rapa HOM05D002576 ORTHO05D002696 1.4e-09 65.9 41 70.7
CsaV3_6G031500 Cucumis sativus L. HOM05D002576 ORTHO05D002696 1.4e-09 65.9 66 54.5
Duzib160G0607 Durio zibethinus HOM05D002576 ORTHO05D002696 1.4e-09 65.9 37 81.1
Prupe.4G047500 Prunus persica HOM05D002576 ORTHO05D002696 1.4e-09 65.9 37 81.1
TWI38G1171 Tripterygium wilfordii HOM05D002576 ORTHO05D002696 1.4e-09 65.9 66 54.5
Actinidia39462 Actinidia chinensis HOM05D002576 ORTHO05D002696 1.8e-09 65.5 37 78.4
CiPaw.10G048300 Carya illinoinensis HOM05D002576 ORTHO05D002696 1.8e-09 65.5 37 78.4
Cc00_g18220 Coffea canephora HOM05D002576 ORTHO05D002696 1.8e-09 65.5 37 73.0
Peaxi162Scf00661g00027 Petunia axillaris HOM05D002576 ORTHO05D002696 1.8e-09 65.5 37 78.4
Thecc.06G187400 Theobroma cacao HOM05D002576 ORTHO05D002696 1.8e-09 65.5 37 81.1
BcaB03g12666 Brassica carinata HOM05D002576 ORTHO05D002696 2.4e-09 65.1 37 75.7
BcaNung01554 Brassica carinata HOM05D002576 ORTHO05D002696 2.4e-09 65.1 37 75.7
BcaNung02733 Brassica carinata HOM05D003775 ORTHO05D004314 2.4e-09 65.1 37 75.7
A03p60400 Brassica napus HOM05D003775 ORTHO05D004314 2.4e-09 65.1 37 75.7
A08p19020 Brassica napus HOM05D002576 ORTHO05D002696 2.4e-09 65.1 37 75.7
C03p88440 Brassica napus HOM05D002576 ORTHO05D002696 2.4e-09 65.1 37 75.7
C07p58270 Brassica napus HOM05D003775 ORTHO05D004314 2.4e-09 65.1 37 75.7
BolC7t46286H Brassica oleracea HOM05D002576 ORTHO05D002696 2.4e-09 65.1 37 75.7
BraA08t33863Z Brassica rapa HOM05D002576 ORTHO05D002696 2.4e-09 65.1 37 75.7
MELO3C026533.2 Cucumis melo HOM05D002576 ORTHO05D002696 2.4e-09 65.1 37 78.4
Thhalv10025988m.g Eutrema salsugineum HOM05D002576 ORTHO05D002696 2.4e-09 65.1 37 75.7
FAN25G2395 Fragaria x ananassa HOM05D002576 ORTHO05D002696 2.4e-09 65.1 37 78.4
Sp7g28800 Schrenkiella parvula HOM05D002576 ORTHO05D002696 2.4e-09 65.1 37 75.7
AL7G21160 Arabidopsis lyrata HOM05D002576 ORTHO05D002696 3.1e-09 64.7 37 73.0
AT4G30930 Arabidopsis thaliana HOM05D002576 ORTHO05D002696 3.1e-09 64.7 37 73.0
CSS0041037 Camellia sinensis var. sinensis HOM05D002576 ORTHO05D002696 3.1e-09 64.7 37 78.4
Carub.0007s0962 Capsella rubella HOM05D002576 ORTHO05D002696 3.1e-09 64.7 37 73.0
CARHR238820 Cardamine hirsuta HOM05D002576 ORTHO05D002696 3.1e-09 64.7 37 73.0
Glyma.07G196700 Glycine max HOM05D002576 ORTHO05D002696 3.1e-09 64.7 37 81.1
Glyma.13G179500 Glycine max HOM05D002576 ORTHO05D002696 3.1e-09 64.7 37 81.1
Lalb_Chr05g0218471 Lupinus albus HOM05D002576 ORTHO05D002696 3.1e-09 64.7 37 81.1
Lalb_Chr16g0383761 Lupinus albus HOM05D002576 ORTHO05D002696 3.1e-09 64.7 37 81.1
Manes.16G027700 Manihot esculenta HOM05D002576 ORTHO05D002696 3.1e-09 64.7 37 78.4
Sabra15G0116600 Salix brachista HOM05D002576 ORTHO05D002696 3.1e-09 64.7 37 75.7
GSVIVG01005209001 Vitis vinifera HOM05D002576 ORTHO05D002696 3.1e-09 64.7 37 78.4
Aa31LG2G19450 Aethionema arabicum HOM05D002576 ORTHO05D002696 4.0e-09 64.3 37 73.0
Dinv07561 Davidia involucrata HOM05D002576 ORTHO05D002696 4.0e-09 64.3 37 75.7
Dinv40563 Davidia involucrata HOM05D002576 ORTHO05D002696 4.0e-09 64.3 37 75.7
MBI06_g04175_MAGBIO Magnolia biondii HOM05D002576 ORTHO05D002696 4.0e-09 64.3 37 81.1
MD05G1312600 Malus domestica HOM05D002576 ORTHO05D002696 4.0e-09 64.3 37 75.7
MD10G1294400 Malus domestica HOM05D002576 ORTHO05D002696 4.0e-09 64.3 37 75.7
Phvul.002G233700 Phaseolus vulgaris HOM05D002576 ORTHO05D002696 4.0e-09 64.3 37 78.4
Potri.015G095700 Populus trichocarpa HOM05D002576 ORTHO05D002696 4.0e-09 64.3 32 87.5
SGA_v2.0_scaffold100G29685 Striga asiatica HOM05D000397 ORTHO05D002023 4.0e-09 64.3 37 70.3
SGA_v2.0_scaffold22G09715 Striga asiatica HOM05D002576 ORTHO05D002696 4.0e-09 64.3 37 75.7
TAR626G1106 Trochodendron aralioides HOM05D002576 ORTHO05D002696 4.0e-09 64.3 37 78.4
VMungo0251G3021 Vigna mungo HOM05D002576 ORTHO05D002696 4.0e-09 64.3 37 78.4
arahy.Tifrunner.gnm1.ann1.B6XGEU Arachis hypogaea HOM05D002576 ORTHO05D002696 5.3e-09 63.9 41 73.2
arahy.Tifrunner.gnm1.ann1.GQH6M1 Arachis hypogaea HOM05D002576 ORTHO05D002696 5.3e-09 63.9 41 73.2
DCAR_008040 Daucus carota HOM05D002576 ORTHO05D002696 5.3e-09 63.9 65 52.3
Hma1.2p1_0785F.1_g217440 Hydrangea macrophylla HOM05D002576 ORTHO05D002696 5.3e-09 63.9 37 75.7
TAR629G3359 Trochodendron aralioides HOM05D002576 ORTHO05D002696 5.3e-09 63.9 37 78.4
ATR0737G004 Amborella trichopoda HOM05D002576 ORTHO05D002696 6.9e-09 63.5 37 75.7
PGR042G0493 Punica granatum HOM05D002576 ORTHO05D002696 6.9e-09 63.5 37 78.4
CANSAT35G0869 Cannabis sativa HOM05D002576 ORTHO05D002696 9.0e-09 63.2 37 73.0
MSTRG.15885 Avicennia marina HOM05D002576 ORTHO05D002696 1.2e-08 62.8 37 73.0
Cfa000461 Carpinus fangiana HOM05D002576 ORTHO05D002696 1.2e-08 62.8 37 78.4
Cfa017079 Carpinus fangiana HOM05D002576 ORTHO05D002696 1.2e-08 62.8 37 78.4
Haze_06456 Corylus avellana HOM05D002576 ORTHO05D002696 1.2e-08 62.8 37 78.4
Haze_21120 Corylus avellana HOM05D002576 ORTHO05D002696 1.2e-08 62.8 37 78.4
RcHm_v2.0_Chr5g0005961 Rosa chinensis HOM05D002576 ORTHO05D002696 1.2e-08 62.8 36 77.8
Sc17g0006180 Simmondsia chinensis HOM05D002576 ORTHO05D002696 1.2e-08 62.8 37 70.3
BcaC01g01132 Brassica carinata HOM05D002576 ORTHO05D002696 2.0e-08 62.0 37 73.0
BolC3t21153H Brassica oleracea HOM05D002576 ORTHO05D002696 2.0e-08 62.0 37 73.0
AUR62039224 Chenopodium quinoa HOM05D002576 ORTHO05D002696 2.0e-08 62.0 37 67.6
Lsat_1_v5_gn_4_53101 Lactuca sativa HOM05D002576 ORTHO05D002696 2.0e-08 62.0 37 70.3
Medtr2g058400 Medicago truncatula HOM05D002576 ORTHO05D002696 2.0e-08 62.0 32 84.4
Nn1g04092 Nelumbo nucifera HOM05D002576 ORTHO05D002696 2.0e-08 62.0 37 75.7
CDE08G1028 Ceratophyllum demersum HOM05D002576 ORTHO05D002696 2.6e-08 61.6 44 65.9
HanXRQChr10g0279261 Helianthus annuus HOM05D002576 ORTHO05D002696 2.6e-08 61.6 37 70.3
SalBow4G1199 Salvia bowleyana HOM05D002576 ORTHO05D002696 2.6e-08 61.6 37 73.0
SalBow8G0476 Salvia bowleyana HOM05D002576 ORTHO05D002696 2.6e-08 61.6 37 73.0
SalBow8G2454 Salvia bowleyana HOM05D002576 ORTHO05D002696 2.6e-08 61.6 37 73.0
Sed0002933 Sechium edule HOM05D002576 ORTHO05D002696 2.6e-08 61.6 32 87.5
Sed0016943 Sechium edule HOM05D002576 ORTHO05D002696 2.6e-08 61.6 32 87.5
Sed0018877 Sechium edule HOM05D002576 ORTHO05D002696 2.6e-08 61.6 32 87.5
PSO063G2260 Papaver somniferum HOM05D002576 ORTHO05D002696 4.5e-08 60.8 37 75.7
EL10Ac7g15805 Beta vulgaris HOM05D002576 ORTHO05D002696 5.8e-08 60.5 37 62.2
Migut.M01140 Erythranthe guttata HOM05D002576 ORTHO05D002696 5.8e-08 60.5 37 67.6
Lj2A288T68 Lonicera japonica HOM05D002576 ORTHO05D002696 5.8e-08 60.5 37 70.3
Oeu050845.1 Olea europaea HOM05D002576 ORTHO05D002696 5.8e-08 60.5 37 70.3
Oeu050848.1 Olea europaea HOM05D002576 ORTHO05D002696 5.8e-08 60.5 37 70.3
Hund20876 Selenicereus undatus HOM05D002576 ORTHO05D002696 5.8e-08 60.5 37 67.6
unitig_0.g680 Utricularia gibba HOM05D000548 ORTHO05D000987 5.8e-08 60.5 37 70.3
Aqoxy2G01195 Aquilegia oxysepala HOM05D002576 ORTHO05D002696 7.6e-08 60.1 37 73.0
Cpa.g.sc27.26 Carica papaya HOM05D002576 ORTHO05D002696 7.6e-08 60.1 37 70.3
ECA234G4695 Erigeron canadensis HOM05D002576 ORTHO05D002696 7.6e-08 60.1 37 67.6
Ah.15g095720 Amaranthus hybridus HOM05D002576 ORTHO05D002696 1.0e-07 59.7 37 64.9
PSO782G3678 Papaver somniferum HOM05D002576 ORTHO05D002696 1.0e-07 59.7 37 73.0
HanXRQChr10g0295981 Helianthus annuus HOM05D002576 ORTHO05D002696 1.7e-07 58.9 37 67.6
HanXRQChr12g0362931 Helianthus annuus HOM05D002576 ORTHO05D002696 2.2e-07 58.5 37 64.9
Eucgr.L02565 Eucalyptus grandis HOM05D002576 ORTHO05D002696 2.9e-07 58.2 30 83.3
Nitab4.5_0000119g0010 Nicotiana tabacum HOM05D002576 ORTHO05D002696 7.1e-06 53.5 37 62.2
Nitab4.5_0007074g0030 Nicotiana tabacum HOM05D002576 ORTHO05D002696 7.1e-06 53.5 37 62.2
SEGI_14558 Sequoiadendron giganteum HOM05D002576 ORTHO05D002696 7.1e-06 53.5 32 68.8


User provided reference genes

Program Settings