Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p089235 Quercus lobata HOM05D000681 ORTHO05D025799 3.8e-60 234.6 113 100.0
QL05p031725 Quercus lobata HOM05D000681 ORTHO05D025799 3.8e-60 234.6 113 100.0
QL06p031995 Quercus lobata HOM05D000681 ORTHO05D005458 2.2e-36 155.6 176 52.8
QL03p015450 Quercus lobata HOM05D000681 ORTHO05D005458 7.2e-35 150.6 74 100.0
QL93p0183_0018 Quercus lobata HOM05D000681 ORTHO05D005458 1.6e-34 149.4 74 98.6
QL93p2017_0010 Quercus lobata HOM05D000681 ORTHO05D005458 1.6e-34 149.4 74 98.6
Ciclev10025045m.g Citrus clementina HOM05D000681 ORTHO05D005458 8.0e-34 147.1 79 89.9
CiPaw.03G134000 Carya illinoinensis HOM05D000681 ORTHO05D005458 1.8e-33 146.0 176 49.4
Hma1.2p1_0375F.1_g138760 Hydrangea macrophylla HOM05D000681 ORTHO05D005458 3.0e-33 145.2 176 49.4
vmacro18636 Vaccinium macrocarpon HOM05D000681 ORTHO05D005458 3.0e-33 145.2 79 87.3
Haze_25051 Corylus avellana HOM05D000681 ORTHO05D005458 4.0e-33 144.8 176 49.4
THA.LOC104799282 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 4.0e-33 144.8 76 92.1
Aqoxy5G01993 Aquilegia oxysepala HOM05D000681 ORTHO05D005458 6.8e-33 144.1 79 84.8
Cfa002759 Carpinus fangiana HOM05D000681 ORTHO05D005458 6.8e-33 144.1 176 49.4
Nn1g05175 Nelumbo nucifera HOM05D000681 ORTHO05D005458 6.8e-33 144.1 79 86.1
Glyma.04G218900 Glycine max HOM05D000681 ORTHO05D005458 8.8e-33 143.7 79 88.6
Glyma.06G146900 Glycine max HOM05D000681 ORTHO05D005458 8.8e-33 143.7 176 50.0
PGR004G1701 Punica granatum HOM05D000681 ORTHO05D005458 8.8e-33 143.7 79 86.1
COL.COLO4_11004 Corchorus olitorius HOM05D000681 ORTHO05D005458 1.2e-32 143.3 79 87.3
CANSAT01G0682 Cannabis sativa HOM05D000681 ORTHO05D005458 1.5e-32 142.9 79 87.3
CARHR278850 Cardamine hirsuta HOM05D000681 ORTHO05D005458 1.5e-32 142.9 79 87.3
FAN28G1262 Fragaria x ananassa HOM05D000681 ORTHO05D005458 1.5e-32 142.9 84 83.3
Gorai.003G047600 Gossypium raimondii HOM05D000681 ORTHO05D005458 1.5e-32 142.9 79 86.1
Lj1g0006962 Lotus japonicus HOM05D000681 ORTHO05D005458 1.5e-32 142.9 79 87.3
Phvul.009G139100 Phaseolus vulgaris HOM05D000681 ORTHO05D005458 1.5e-32 142.9 176 49.4
THA.LOC104818476 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 1.5e-32 142.9 79 86.1
TPR.G23769 Trifolium pratense HOM05D000681 ORTHO05D005458 1.5e-32 142.9 79 86.1
VMungo1309G3103 Vigna mungo HOM05D000681 ORTHO05D005458 1.5e-32 142.9 79 87.3
FvH4_1g22620 Fragaria vesca HOM05D000681 ORTHO05D005458 2.0e-32 142.5 79 87.3
FAN19G1795 Fragaria x ananassa HOM05D000681 ORTHO05D005458 2.0e-32 142.5 79 87.3
FAN23G0462 Fragaria x ananassa HOM05D000681 ORTHO05D005458 2.0e-32 142.5 79 87.3
Gohir.A02G135600 Gossypium hirsutum HOM05D000681 ORTHO05D005458 2.0e-32 142.5 76 89.5
RcHm_v2.0_Chr2g0116631 Rosa chinensis HOM05D000681 ORTHO05D005458 2.0e-32 142.5 79 88.6
Dinv42689 Davidia involucrata HOM05D000681 ORTHO05D005458 2.6e-32 142.1 79 84.8
Aa31LG1G17090 Aethionema arabicum HOM05D000681 ORTHO05D005458 3.4e-32 141.7 79 86.1
FAN26G1956 Fragaria x ananassa HOM05D000681 ORTHO05D005458 3.4e-32 141.7 79 87.3
MBI02_g18929_MAGBIO Magnolia biondii HOM05D000681 ORTHO05D005458 3.4e-32 141.7 79 83.5
Rhsim08G0006300 Rhododendron simsii HOM05D000681 ORTHO05D005458 3.4e-32 141.7 79 83.5
AL8G42320 Arabidopsis lyrata HOM05D000681 ORTHO05D005458 4.4e-32 141.4 79 86.1
Carub.0008s2567 Capsella rubella HOM05D000681 ORTHO05D005458 4.4e-32 141.4 79 86.1
Thhalv10003741m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 4.4e-32 141.4 79 86.1
Lj4g0003781 Lotus japonicus HOM05D000681 ORTHO05D005458 4.4e-32 141.4 79 84.8
BcaC03g18282 Brassica carinata HOM05D000681 ORTHO05D005458 5.7e-32 141.0 79 84.8
A02p43520 Brassica napus HOM05D000681 ORTHO05D005458 5.7e-32 141.0 79 84.8
BolC2t12427H Brassica oleracea HOM05D000681 ORTHO05D005458 5.7e-32 141.0 79 84.8
BraA02t09280Z Brassica rapa HOM05D000681 ORTHO05D005458 5.7e-32 141.0 79 84.8
CSS0026429 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 5.7e-32 141.0 79 86.1
CSS0032659 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 5.7e-32 141.0 79 86.1
Duzib147G1662 Durio zibethinus HOM05D000681 ORTHO05D005458 5.7e-32 141.0 79 84.8
Psat5g065080 Pisum sativum HOM05D000681 ORTHO05D005458 5.7e-32 141.0 79 86.1
Thecc.01G113800 Theobroma cacao HOM05D000681 ORTHO05D005458 5.7e-32 141.0 79 84.8
AT5G64840 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 7.5e-32 140.6 79 86.1
arahy.Tifrunner.gnm1.ann1.G3SQ12 Arachis hypogaea HOM05D000681 ORTHO05D005458 7.5e-32 140.6 176 48.3
arahy.Tifrunner.gnm1.ann1.TR14KI Arachis hypogaea HOM05D000681 ORTHO05D005458 7.5e-32 140.6 176 48.3
BcaB07g29761 Brassica carinata HOM05D000681 ORTHO05D005458 7.5e-32 140.6 79 84.8
Eucgr.I00319 Eucalyptus grandis HOM05D000681 ORTHO05D005458 7.5e-32 140.6 79 84.8
Medtr3g095010 Medicago truncatula HOM05D000681 ORTHO05D005458 7.5e-32 140.6 79 84.8
Nn5g28891 Nelumbo nucifera HOM05D000681 ORTHO05D005458 7.5e-32 140.6 79 83.5
Oeu028523.2 Olea europaea HOM05D000681 ORTHO05D005458 7.5e-32 140.6 79 86.1
C02p63610 Brassica napus HOM05D000681 ORTHO05D005458 9.8e-32 140.2 79 84.8
CsaV3_6G042400 Cucumis sativus L. HOM05D000681 ORTHO05D005458 9.8e-32 140.2 79 84.8
Gohir.D03G046533 Gossypium hirsutum HOM05D000681 ORTHO05D005458 9.8e-32 140.2 79 84.8
Sp2g27920 Schrenkiella parvula HOM05D000681 ORTHO05D005458 9.8e-32 140.2 79 84.8
Ca_16896_v3 Cicer arietinum L. HOM05D000681 ORTHO05D005458 1.3e-31 139.8 79 84.8
HPP92_013366 Vanilla planifolia HOM05D000681 ORTHO05D005458 1.3e-31 139.8 79 84.8
A10p27550 Brassica napus HOM05D000681 ORTHO05D005458 1.7e-31 139.4 79 84.8
BraA10t44807Z Brassica rapa HOM05D000681 ORTHO05D005458 1.7e-31 139.4 79 84.8
MELO3C007483.2 Cucumis melo HOM05D000681 ORTHO05D005458 1.7e-31 139.4 79 84.8
Dinv19483 Davidia involucrata HOM05D000681 ORTHO05D005458 1.7e-31 139.4 79 84.8
Gohir.D11G233700 Gossypium hirsutum HOM05D000681 ORTHO05D005458 1.7e-31 139.4 79 84.8
Gorai.007G244600 Gossypium raimondii HOM05D000681 ORTHO05D005458 1.7e-31 139.4 79 84.8
TAR381G0346 Trochodendron aralioides HOM05D000681 ORTHO05D005458 1.7e-31 139.4 76 85.5
Thhalv10012861m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 2.2e-31 139.0 79 84.8
Sabra07G0067700 Salix brachista HOM05D000681 ORTHO05D005458 2.8e-31 138.7 80 78.8
Sp6g33480 Schrenkiella parvula HOM05D000681 ORTHO05D005458 2.8e-31 138.7 79 83.5
Gohir.A11G198000 Gossypium hirsutum HOM05D000681 ORTHO05D005458 3.7e-31 138.3 79 83.5
PGSC0003DMG400016576 Solanum tuberosum HOM05D000681 ORTHO05D005458 3.7e-31 138.3 79 84.8
Atru.chr4.340 Acer truncatum HOM05D000681 ORTHO05D005458 4.9e-31 137.9 79 83.5
Actinidia12210 Actinidia chinensis HOM05D000681 ORTHO05D005458 4.9e-31 137.9 79 82.3
ClCG01G016130 Citrullus lanatus HOM05D000681 ORTHO05D005458 4.9e-31 137.9 79 83.5
ECA232G3656 Erigeron canadensis HOM05D000681 ORTHO05D005458 4.9e-31 137.9 79 82.3
BcaB08g37171 Brassica carinata HOM05D000681 ORTHO05D005458 6.3e-31 137.5 79 83.5
Manes.12G143100 Manihot esculenta HOM05D000681 ORTHO05D005458 6.3e-31 137.5 176 46.0
Peaxi162Scf00106g02319 Petunia axillaris HOM05D000681 ORTHO05D005458 6.3e-31 137.5 79 83.5
TWI77G0095 Tripterygium wilfordii HOM05D000681 ORTHO05D005458 6.3e-31 137.5 79 82.3
C09p67620 Brassica napus HOM05D000681 ORTHO05D005458 8.3e-31 137.1 79 83.5
CDE02G2865 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 8.3e-31 137.1 79 81.0
Cc07_g16310 Coffea canephora HOM05D000681 ORTHO05D005458 8.3e-31 137.1 79 83.5
Lalb_Chr23g0272391 Lupinus albus HOM05D000681 ORTHO05D005458 8.3e-31 137.1 79 83.5
MD15G1331800 Malus domestica HOM05D000681 ORTHO05D005458 8.3e-31 137.1 79 83.5
Potri.007G080600 Populus trichocarpa HOM05D000681 ORTHO05D005458 8.3e-31 137.1 79 79.7
Prupe.6G171800 Prunus persica HOM05D000681 ORTHO05D005458 8.3e-31 137.1 79 83.5
Solyc04g051800.3 Solanum lycopersicum HOM05D000681 ORTHO05D005458 8.3e-31 137.1 75 88.0
MSTRG.2527 Avicennia marina HOM05D000681 ORTHO05D005458 1.1e-30 136.7 79 82.3
Duzib264G0717 Durio zibethinus HOM05D000681 ORTHO05D005458 1.1e-30 136.7 79 84.8
Lsat_1_v5_gn_4_137440 Lactuca sativa HOM05D000681 ORTHO05D005458 1.1e-30 136.7 79 81.0
PSO170G5235 Papaver somniferum HOM05D000681 ORTHO05D005458 1.1e-30 136.7 79 82.3
PSO210G1708 Papaver somniferum HOM05D000681 ORTHO05D005458 1.1e-30 136.7 79 82.3
GSVIVG01022235001 Vitis vinifera HOM05D000681 ORTHO05D005458 1.1e-30 136.7 176 47.2
Carub.0006s0837 Capsella rubella HOM05D000681 ORTHO05D005458 1.4e-30 136.3 87 75.9
Potri.005G084800 Populus trichocarpa HOM05D000681 ORTHO05D005458 1.4e-30 136.3 176 46.6
Sed0012802 Sechium edule HOM05D000681 ORTHO05D005458 1.4e-30 136.3 79 82.3
Sopen04g023150 Solanum pennellii HOM05D000681 ORTHO05D005458 1.4e-30 136.3 75 88.0
SGA_v2.0_scaffold2G01293 Striga asiatica HOM05D000681 ORTHO05D005458 1.4e-30 136.3 79 81.0
Cpa.g.c37838 Carica papaya HOM05D000681 ORTHO05D005458 1.8e-30 136.0 79 82.3
Nitab4.5_0004840g0050 Nicotiana tabacum HOM05D000681 ORTHO05D005458 1.8e-30 136.0 75 86.7
AL6G20350 Arabidopsis lyrata HOM05D000681 ORTHO05D005458 2.4e-30 135.6 79 82.3
HanXRQChr09g0259711 Helianthus annuus HOM05D000681 ORTHO05D005458 2.4e-30 135.6 79 81.0
Rhsim08G0007000 Rhododendron simsii HOM05D000681 ORTHO05D005458 2.4e-30 135.6 79 83.5
Sc09g0002800 Simmondsia chinensis HOM05D000681 ORTHO05D005458 2.4e-30 135.6 79 81.0
CAN.G347.2 Capsicum annuum HOM05D000681 ORTHO05D005458 3.1e-30 135.2 75 86.7
HanXRQChr15g0493501 Helianthus annuus HOM05D000681 ORTHO05D005458 3.1e-30 135.2 79 81.0
Nitab4.5_0006520g0010 Nicotiana tabacum HOM05D000681 ORTHO05D005458 3.1e-30 135.2 75 86.7
Zm00001eb115000 Zea mays HOM05D000681 ORTHO05D005458 3.1e-30 135.2 79 82.3
ATR0564G351 Amborella trichopoda HOM05D000681 ORTHO05D005458 4.1e-30 134.8 79 82.3
AT5G09930 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 5.4e-30 134.4 79 82.3
SalBow6G0295 Salvia bowleyana HOM05D000681 ORTHO05D005458 5.4e-30 134.4 79 82.3
TAR625G1550 Trochodendron aralioides HOM05D000681 ORTHO05D005458 5.4e-30 134.4 79 81.0
Aa31LG3G17200 Aethionema arabicum HOM05D000681 ORTHO05D005458 7.0e-30 134.0 75 86.7
CDE08G1085 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 7.0e-30 134.0 79 79.7
Migut.H02441 Erythranthe guttata HOM05D000681 ORTHO05D005458 7.0e-30 134.0 79 79.7
Os11g0603200 Oryza sativa ssp. japonica HOM05D000681 ORTHO05D005458 7.0e-30 134.0 79 81.0
BolC9t59524H Brassica oleracea HOM05D000681 ORTHO05D005458 1.2e-29 133.3 79 81.0
Lj4A865T29 Lonicera japonica HOM05D000681 ORTHO05D005458 2.0e-29 132.5 79 79.7
CARHR203400 Cardamine hirsuta HOM05D000681 ORTHO05D005458 2.7e-29 132.1 79 79.7
unitig_747.g21746 Utricularia gibba HOM05D000681 ORTHO05D005458 4.5e-29 131.3 75 86.7
MD01G1020500 Malus domestica HOM05D000681 ORTHO05D005458 1.7e-28 129.4 109 61.5
Hund21729 Selenicereus undatus HOM05D000681 ORTHO05D005458 1.1e-27 126.7 79 74.7
RcHm_v2.0_Chr2g0116831 Rosa chinensis HOM05D000681 ORTHO05D005458 2.5e-27 125.6 80 80.0
AUR62000701 Chenopodium quinoa HOM05D000681 ORTHO05D005458 3.3e-27 125.2 79 77.2
AUR62005252 Chenopodium quinoa HOM05D000681 ORTHO05D005458 3.3e-27 125.2 79 77.2
SMO358G0544 Selaginella moellendorffii HOM05D000681 ORTHO05D005458 3.3e-27 125.2 79 73.4
Ah.06g189110 Amaranthus hybridus HOM05D000681 ORTHO05D005458 4.7e-26 121.3 79 77.2
AagrBONN_evm.TU.Sc2ySwM_228.4630 Anthoceros agrestis HOM05D000681 ORTHO05D005458 8.0e-26 120.6 79 68.4
RcHm_v2.0_Chr2g0116661 Rosa chinensis HOM05D000681 ORTHO05D005458 8.0e-26 120.6 79 78.5
EL10Ac4g09838 Beta vulgaris HOM05D000681 ORTHO05D005458 3.0e-25 118.6 79 73.4
SGA_v2.0_scaffold51G18759 Striga asiatica HOM05D000681 ORTHO05D005458 3.0e-25 118.6 73 75.3
Pp3c19_17230 Physcomitrium patens HOM05D000681 ORTHO05D005458 4.0e-25 118.2 79 68.4
AagrBONN_evm.TU.Sc2ySwM_228.474 Anthoceros agrestis HOM05D000681 ORTHO05D005458 8.9e-25 117.1 79 67.1
Pp3c2_22140 Physcomitrium patens HOM05D000681 ORTHO05D005458 3.4e-24 115.2 79 69.6
Mapoly0003s0123 Marchantia polymorpha HOM05D000681 ORTHO05D005458 5.7e-24 114.4 76 72.4
QL06p031769 Quercus lobata HOM05D000681 ORTHO05D005458 7.5e-24 114.0 62 87.1
DCAR_001373 Daucus carota HOM05D000681 ORTHO05D005458 3.7e-23 111.7 90 65.6
CBR_g20265 Chara braunii HOM05D000681 ORTHO05D005458 5.4e-22 107.8 79 65.8
HPP92_013373 Vanilla planifolia HOM05D000681 ORTHO05D005458 6.6e-20 100.9 92 59.8
SalBow5G4766 Salvia bowleyana HOM05D000681 ORTHO05D005458 1.1e-17 93.6 53 83.0
Cre08.g372250 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D005458 3.1e-17 92.0 76 57.9
PRCOL_00003140 Prasinoderma coloniale HOM05D000681 ORTHO05D005458 1.3e-15 86.7 74 56.8
Pp3c21_9610 Physcomitrium patens HOM05D000681 ORTHO05D005458 2.4e-14 82.4 61 65.6
MBI13_g23287_MAGBIO Magnolia biondii HOM05D000681 ORTHO05D025799 1.3e-12 76.6 53 73.6
MCO11G006 Micromonas commoda HOM05D000681 ORTHO05D005458 3.6e-10 68.6 77 48.1
SEGI_28136 Sequoiadendron giganteum HOM05D000681 ORTHO05D005458 8.1e-10 67.4 36 83.3
Rhsim06G0129600 Rhododendron simsii HOM05D000681 ORTHO05D025799 4.4e-08 61.6 39 64.1
MBI02_g20283_MAGBIO Magnolia biondii HOM05D000681 ORTHO05D025799 7.5e-08 60.8 57 61.4
QL09p008289 Quercus lobata HOM05D001043 ORTHO05D000106 2.4e-06 55.8 36 69.4


User provided reference genes

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