Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p031548 Quercus lobata HOM05D003116 ORTHO05D003619 1.4e-41 172.6 86 100.0
MSTRG.9020 Avicennia marina HOM05D003116 ORTHO05D003619 1.4e-22 109.4 68 83.8
DCAR_014783 Daucus carota HOM05D003116 ORTHO05D003619 1.4e-22 109.4 68 82.4
TWI14G0774 Tripterygium wilfordii HOM05D003116 ORTHO05D003619 1.4e-22 109.4 68 82.4
Thecc.05G204800 Theobroma cacao HOM05D003116 ORTHO05D003619 1.8e-22 109.0 68 80.9
Duzib177G0648 Durio zibethinus HOM05D003116 ORTHO05D003619 3.1e-22 108.2 68 82.4
Eucgr.B01384 Eucalyptus grandis HOM05D003116 ORTHO05D003619 3.1e-22 108.2 88 64.8
Glyma.10G170200 Glycine max HOM05D003116 ORTHO05D003619 4.1e-22 107.8 68 79.4
Glyma.20G219800 Glycine max HOM05D003116 ORTHO05D003619 4.1e-22 107.8 68 79.4
MELO3C008594.2 Cucumis melo HOM05D003116 ORTHO05D003619 7.0e-22 107.1 68 79.4
AUR62036544 Chenopodium quinoa HOM05D003116 ORTHO05D003619 9.1e-22 106.7 59 84.7
Lalb_Chr06g0168431 Lupinus albus HOM05D003116 ORTHO05D003619 1.6e-21 105.9 68 77.9
PSO210G3889 Papaver somniferum HOM05D003116 ORTHO05D003619 1.6e-21 105.9 68 80.9
Prupe.6G358700 Prunus persica HOM05D003116 ORTHO05D003619 1.6e-21 105.9 68 80.9
AUR62000365 Chenopodium quinoa HOM05D003116 ORTHO05D003619 2.0e-21 105.5 59 84.7
Duzib128G0562 Durio zibethinus HOM05D003116 ORTHO05D003619 2.0e-21 105.5 68 79.4
Lj5g0010554 Lotus japonicus HOM05D003116 ORTHO05D003619 2.0e-21 105.5 68 76.5
Oeu033264.1 Olea europaea HOM05D003116 ORTHO05D003619 2.0e-21 105.5 68 77.9
Eucgr.B01382 Eucalyptus grandis HOM05D003116 ORTHO05D003619 2.7e-21 105.1 68 76.5
Nitab4.5_0007901g0020 Nicotiana tabacum HOM05D003116 ORTHO05D003619 2.7e-21 105.1 68 80.9
Nitab4.5_0009004g0010 Nicotiana tabacum HOM05D003116 ORTHO05D003619 2.7e-21 105.1 68 80.9
arahy.Tifrunner.gnm1.ann1.6AR5V7 Arachis hypogaea HOM05D003116 ORTHO05D003619 3.5e-21 104.8 68 77.9
ClCG11G007480 Citrullus lanatus HOM05D003116 ORTHO05D003619 3.5e-21 104.8 68 77.9
MD04G1241200 Malus domestica HOM05D003116 ORTHO05D003619 3.5e-21 104.8 68 79.4
Nn3g20158 Nelumbo nucifera HOM05D003116 ORTHO05D003619 3.5e-21 104.8 68 77.9
PGR119G1776 Punica granatum HOM05D003116 ORTHO05D003619 3.5e-21 104.8 68 76.5
VMungo0720G2849 Vigna mungo HOM05D003116 ORTHO05D003619 3.5e-21 104.8 68 76.5
arahy.Tifrunner.gnm1.ann1.9IK2W2 Arachis hypogaea HOM05D003116 ORTHO05D003619 5.9e-21 104.0 68 77.9
CiPaw.02G065200 Carya illinoinensis HOM05D003116 ORTHO05D003619 7.7e-21 103.6 68 77.9
AUR62006711 Chenopodium quinoa HOM05D003116 ORTHO05D003619 7.7e-21 103.6 59 83.1
AUR62006712 Chenopodium quinoa HOM05D003116 ORTHO05D003619 7.7e-21 103.6 59 83.1
Gohir.A08G224000 Gossypium hirsutum HOM05D003116 ORTHO05D003619 7.7e-21 103.6 68 77.9
HanXRQChr05g0156871 Helianthus annuus HOM05D003116 ORTHO05D003619 7.7e-21 103.6 68 75.0
Hund07322 Selenicereus undatus HOM05D003116 ORTHO05D003619 7.7e-21 103.6 68 76.5
Gohir.D08G244300 Gossypium hirsutum HOM05D003116 ORTHO05D003619 1.0e-20 103.2 68 77.9
Gorai.004G260600 Gossypium raimondii HOM05D003116 ORTHO05D003619 1.0e-20 103.2 68 77.9
SalBow8G0641 Salvia bowleyana HOM05D003116 ORTHO05D003619 1.0e-20 103.2 68 76.5
Ca_09971_v3 Cicer arietinum L. HOM05D003116 ORTHO05D003619 1.3e-20 102.8 68 75.0
Lj7C705G3 Lonicera japonica HOM05D003116 ORTHO05D003619 1.3e-20 102.8 68 75.0
Manes.08G104900 Manihot esculenta HOM05D003116 ORTHO05D003619 1.3e-20 102.8 68 76.5
arahy.Tifrunner.gnm1.ann1.W3HBVG Arachis hypogaea HOM05D003116 ORTHO05D003619 1.7e-20 102.4 68 76.5
Migut.F01553 Erythranthe guttata HOM05D003116 ORTHO05D003619 1.7e-20 102.4 68 75.0
Peaxi162Scf00135g01111 Petunia axillaris HOM05D003116 ORTHO05D003619 1.7e-20 102.4 68 79.4
Phvul.010G077790 Phaseolus vulgaris HOM05D003116 ORTHO05D003619 1.7e-20 102.4 68 75.0
RcHm_v2.0_Chr3g0448271 Rosa chinensis HOM05D003116 ORTHO05D003619 1.7e-20 102.4 68 76.5
GSVIVG01019146001 Vitis vinifera HOM05D003116 ORTHO05D003619 1.7e-20 102.4 68 75.0
CANSAT54G1522 Cannabis sativa HOM05D003116 ORTHO05D003619 2.2e-20 102.1 68 75.0
Atru.chr12.2147 Acer truncatum HOM05D003116 ORTHO05D003619 2.9e-20 101.7 68 73.5
CAN.G186.68 Capsicum annuum HOM05D003116 ORTHO05D003619 2.9e-20 101.7 68 77.9
COL.COLO4_11895 Corchorus olitorius HOM05D003116 ORTHO05D003619 2.9e-20 101.7 68 76.5
ECA233G1402 Erigeron canadensis HOM05D003116 ORTHO05D003619 2.9e-20 101.7 68 73.5
Hma1.2p1_0171F.1_g075610 Hydrangea macrophylla HOM05D003116 ORTHO05D003619 2.9e-20 101.7 68 76.5
Sc25g0001690 Simmondsia chinensis HOM05D003116 ORTHO05D003619 2.9e-20 101.7 68 75.0
PGSC0003DMG400025436 Solanum tuberosum HOM05D003116 ORTHO05D003619 2.9e-20 101.7 68 77.9
SGA_v2.0_scaffold7G04085 Striga asiatica HOM05D003116 ORTHO05D003619 2.9e-20 101.7 68 75.0
ATR0609G064 Amborella trichopoda HOM05D003116 ORTHO05D003619 3.8e-20 101.3 68 69.1
FvH4_6g00790 Fragaria vesca HOM05D003116 ORTHO05D003619 3.8e-20 101.3 68 76.5
FAN02G4520 Fragaria x ananassa HOM05D003116 ORTHO05D003619 3.8e-20 101.3 68 76.5
FAN05G0861 Fragaria x ananassa HOM05D003116 ORTHO05D003619 3.8e-20 101.3 68 76.5
FAN09G4293 Fragaria x ananassa HOM05D003116 ORTHO05D003619 3.8e-20 101.3 68 76.5
Psat6g052120 Pisum sativum HOM05D003116 ORTHO05D003619 3.8e-20 101.3 68 73.5
Sp7g25620 Schrenkiella parvula HOM05D003116 ORTHO05D003619 3.8e-20 101.3 68 76.5
TAR636G0211 Trochodendron aralioides HOM05D003116 ORTHO05D003619 3.8e-20 101.3 68 75.0
Cfa006285 Carpinus fangiana HOM05D003116 ORTHO05D003619 5.0e-20 100.9 59 83.1
Ciclev10023555m.g Citrus clementina HOM05D003116 ORTHO05D003619 5.0e-20 100.9 68 73.5
Haze_04522 Corylus avellana HOM05D003116 ORTHO05D003619 5.0e-20 100.9 59 83.1
Sabra05G0155200 Salix brachista HOM05D003116 ORTHO05D003619 5.0e-20 100.9 68 73.5
Solyc04g009810.3 Solanum lycopersicum HOM05D003116 ORTHO05D003619 5.0e-20 100.9 68 77.9
Sopen04g004940 Solanum pennellii HOM05D003116 ORTHO05D003619 5.0e-20 100.9 68 77.9
Sed0017776 Sechium edule HOM05D003116 ORTHO05D003619 6.5e-20 100.5 68 73.5
EL10Ac4g09413 Beta vulgaris HOM05D003116 ORTHO05D003619 8.5e-20 100.1 68 75.0
Lsat_1_v5_gn_8_2981 Lactuca sativa HOM05D003116 ORTHO05D003619 8.5e-20 100.1 68 73.5
Medtr1g078400 Medicago truncatula HOM05D003116 ORTHO05D003619 8.5e-20 100.1 68 72.1
MBI11_g04280_MAGBIO Magnolia biondii HOM05D003116 ORTHO05D003619 1.1e-19 99.8 68 73.5
Os04g0659900 Oryza sativa ssp. japonica HOM05D003116 ORTHO05D003619 1.1e-19 99.8 68 75.0
vmacro10396 Vaccinium macrocarpon HOM05D003116 ORTHO05D003619 1.1e-19 99.8 68 75.0
BcaC06g32676 Brassica carinata HOM05D003116 ORTHO05D003619 1.5e-19 99.4 68 75.0
A03p57410 Brassica napus HOM05D003116 ORTHO05D003619 1.5e-19 99.4 68 75.0
C07p55620 Brassica napus HOM05D003116 ORTHO05D003619 1.5e-19 99.4 68 75.0
BolC7t46042H Brassica oleracea HOM05D003116 ORTHO05D003619 1.5e-19 99.4 68 75.0
BraA03t14807Z Brassica rapa HOM05D003116 ORTHO05D003619 1.5e-19 99.4 68 75.0
FAN14G1801 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.5e-19 99.4 68 75.0
Rhsim09G0131200 Rhododendron simsii HOM05D003116 ORTHO05D003619 1.5e-19 99.4 68 75.0
CSS0019916 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 1.9e-19 99.0 68 76.5
Thhalv10025473m.g Eutrema salsugineum HOM05D003116 ORTHO05D003619 1.9e-19 99.0 68 73.5
Potri.005G204500 Populus trichocarpa HOM05D003116 ORTHO05D003619 1.9e-19 99.0 68 72.1
TPR.G14646 Trifolium pratense HOM05D003116 ORTHO05D003619 1.9e-19 99.0 68 72.1
ATR0743G097 Amborella trichopoda HOM05D003116 ORTHO05D003619 2.5e-19 98.6 68 69.1
AL7G25070 Arabidopsis lyrata HOM05D003116 ORTHO05D003619 2.5e-19 98.6 68 73.5
AT4G27650 Arabidopsis thaliana HOM05D003116 ORTHO05D003619 2.5e-19 98.6 68 73.5
RcHm_v2.0_Chr4g0442151 Rosa chinensis HOM05D003116 ORTHO05D003619 2.5e-19 98.6 68 75.0
Sed0012106 Sechium edule HOM05D003116 ORTHO05D003619 3.2e-19 98.2 68 73.5
Ah.13g070600 Amaranthus hybridus HOM05D003116 ORTHO05D003619 4.2e-19 97.8 68 72.1
THA.LOC104821795 Tarenaya hassleriana HOM05D003116 ORTHO05D003619 4.2e-19 97.8 68 72.1
Aa31LG7G11540 Aethionema arabicum HOM05D003116 ORTHO05D003619 5.5e-19 97.4 68 73.5
BcaNung01649 Brassica carinata HOM05D003116 ORTHO05D003619 5.5e-19 97.4 68 73.5
Actinidia38911 Actinidia chinensis HOM05D003116 ORTHO05D003619 7.2e-19 97.1 68 73.5
EL10Ac1g01549 Beta vulgaris HOM05D003116 ORTHO05D003619 7.2e-19 97.1 68 73.5
CARHR235350 Cardamine hirsuta HOM05D003116 ORTHO05D003619 9.4e-19 96.7 68 73.5
PSO357G0261 Papaver somniferum HOM05D003116 ORTHO05D003619 9.4e-19 96.7 68 73.5
Carub.0007s1320 Capsella rubella HOM05D003116 ORTHO05D003619 1.6e-18 95.9 68 72.1
CBR_g24366 Chara braunii HOM05D003116 ORTHO05D003619 1.6e-18 95.9 68 70.6
Cc02_g09230 Coffea canephora HOM05D003116 ORTHO05D003619 1.6e-18 95.9 59 78.0
Aqoxy5G00402 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 2.1e-18 95.5 68 72.1
AT3G58390 Arabidopsis thaliana HOM05D003116 ORTHO05D003619 2.1e-18 95.5 59 81.4
TAR636G1363 Trochodendron aralioides HOM05D003116 ORTHO05D003619 2.7e-18 95.1 68 70.6
HPP92_011793 Vanilla planifolia HOM05D003116 ORTHO05D003619 3.6e-18 94.7 58 77.6
TAR636G1518 Trochodendron aralioides HOM05D003116 ORTHO05D003619 4.7e-18 94.4 68 69.1
BraA01t01835Z Brassica rapa HOM05D003116 ORTHO05D003619 8.0e-18 93.6 68 72.1
TAR636G1994 Trochodendron aralioides HOM05D003116 ORTHO05D003619 8.0e-18 93.6 68 69.1
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 1.0e-17 93.2 68 72.1
Potri.004G092600 Populus trichocarpa HOM05D003116 ORTHO05D003619 1.4e-17 92.8 69 68.1
SEGI_30925 Sequoiadendron giganteum HOM05D003116 ORTHO05D003619 1.4e-17 92.8 68 64.7
AagrBONN_evm.TU.Sc2ySwM_228.5685 Anthoceros agrestis HOM05D003116 ORTHO05D003619 1.8e-17 92.4 68 67.6
Zm00001eb067580 Zea mays HOM05D003116 ORTHO05D003619 2.3e-17 92.0 59 71.2
AagrBONN_evm.TU.Sc2ySwM_344.2897 Anthoceros agrestis HOM05D003116 ORTHO05D003619 3.0e-17 91.7 68 66.2
SMO356G0619 Selaginella moellendorffii HOM05D003116 ORTHO05D003619 3.0e-17 91.7 59 69.5
TAR625G1207 Trochodendron aralioides HOM05D003116 ORTHO05D003619 3.0e-17 91.7 68 67.6
Aa31LG7G11530 Aethionema arabicum HOM05D003116 ORTHO05D003619 6.8e-17 90.5 59 74.6
Pp3c4_11130 Physcomitrium patens HOM05D003116 ORTHO05D003619 2.0e-16 89.0 68 61.8
Mapoly0014s0040 Marchantia polymorpha HOM05D003116 ORTHO05D003619 4.4e-16 87.8 58 67.2
CARHR168750 Cardamine hirsuta HOM05D003116 ORTHO05D003619 9.8e-16 86.7 59 72.9
MD12G1258200 Malus domestica HOM05D003116 ORTHO05D003619 2.2e-15 85.5 58 77.6
unitig_748.g8763 Utricularia gibba HOM05D003116 ORTHO05D003619 2.8e-15 85.1 68 63.2
BcaC07g37718 Brassica carinata HOM05D003116 ORTHO05D003619 4.8e-15 84.3 68 64.7
A08p10310 Brassica napus HOM05D003116 ORTHO05D003619 4.8e-15 84.3 68 64.7
BolC8t48097H Brassica oleracea HOM05D003116 ORTHO05D003619 4.8e-15 84.3 68 64.7
BraA08t33029Z Brassica rapa HOM05D003116 ORTHO05D003619 4.8e-15 84.3 68 64.7
BraA08t33030Z Brassica rapa HOM05D003116 ORTHO05D003619 4.8e-15 84.3 68 64.7
Glyma.19G188500 Glycine max HOM05D003116 ORTHO05D003619 4.8e-15 84.3 66 63.6
Actinidia29561 Actinidia chinensis HOM05D003116 ORTHO05D003619 1.1e-14 83.2 68 64.7
BcaB04g18111 Brassica carinata HOM05D003116 ORTHO05D003619 1.1e-14 83.2 57 70.2
FAN07G2794 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.4e-14 82.8 53 77.4
Sp7g11900 Schrenkiella parvula HOM05D003116 ORTHO05D003619 1.4e-14 82.8 68 64.7
FvH4_4g33100 Fragaria vesca HOM05D003116 ORTHO05D003619 4.1e-14 81.3 53 75.5
FAN12G0407 Fragaria x ananassa HOM05D003116 ORTHO05D003619 4.1e-14 81.3 53 75.5
FAN22G1543 Fragaria x ananassa HOM05D003116 ORTHO05D003619 4.1e-14 81.3 53 75.5
Duzib128G1204 Durio zibethinus HOM05D003116 ORTHO05D003619 7.0e-14 80.5 66 62.1
Lalb_Chr25g0288771 Lupinus albus HOM05D003116 ORTHO05D003619 1.2e-13 79.7 68 55.9
Thecc.05G075800 Theobroma cacao HOM05D003116 ORTHO05D003619 1.2e-13 79.7 66 60.6
FAN17G2384 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.6e-13 79.3 52 75.0
Phvul.001G183700 Phaseolus vulgaris HOM05D003116 ORTHO05D003619 1.6e-13 79.3 64 62.5
Atru.chr8.1700 Acer truncatum HOM05D003116 ORTHO05D003619 4.5e-13 77.8 66 59.1
VMungo1383G1045 Vigna mungo HOM05D003116 ORTHO05D003619 1.0e-12 76.6 64 57.8
PRCOL_00002239 Prasinoderma coloniale HOM05D003116 ORTHO05D003619 1.7e-12 75.9 57 56.1
CSS0019586 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 3.8e-12 74.7 83 43.4
COL.COLO4_22257 Corchorus olitorius HOM05D003116 ORTHO05D003619 5.0e-12 74.3 66 59.1
Psat3g038280 Pisum sativum HOM05D003116 ORTHO05D003619 5.0e-12 74.3 97 41.2
arahy.Tifrunner.gnm1.ann1.3K81QB Arachis hypogaea HOM05D003116 ORTHO05D003619 6.6e-12 73.9 65 58.5
CSS0045595 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 8.6e-12 73.6 83 42.2
Cre09.g388615 Chlamydomonas reinhardtii HOM05D003116 ORTHO05D003619 8.6e-12 73.6 56 58.9
Medtr7g102760 Medicago truncatula HOM05D003116 ORTHO05D003619 1.1e-11 73.2 97 41.2
BolC1t02337H Brassica oleracea HOM05D003116 ORTHO05D003619 1.5e-11 72.8 55 69.1
Lj1g0028191 Lotus japonicus HOM05D003116 ORTHO05D003619 1.5e-11 72.8 67 53.7
Thecc.01G141600 Theobroma cacao HOM05D003116 ORTHO05D003619 1.9e-11 72.4 66 57.6
MCO02G454 Micromonas commoda HOM05D003116 ORTHO05D003619 2.5e-11 72.0 57 56.1
arahy.Tifrunner.gnm1.ann1.T6DYUJ Arachis hypogaea HOM05D003116 ORTHO05D003619 3.3e-11 71.6 65 55.4
Aqoxy2G04101 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 4.2e-11 71.2 66 54.5
arahy.Tifrunner.gnm1.ann1.I0YB5S Arachis hypogaea HOM05D003116 ORTHO05D003619 9.5e-11 70.1 65 55.4
GSVIVG01033716001 Vitis vinifera HOM05D003116 ORTHO05D003619 9.5e-11 70.1 68 51.5
Lj2P124T66 Lonicera japonica HOM05D003116 ORTHO05D003619 1.2e-10 69.7 57 56.1
arahy.Tifrunner.gnm1.ann1.U29Z63 Arachis hypogaea HOM05D003116 ORTHO05D003619 2.3e-09 65.5 65 53.8
Prupe.7G122700 Prunus persica HOM05D003116 ORTHO05D003619 5.2e-09 64.3 65 52.3
FAN09G4125 Fragaria x ananassa HOM05D003116 ORTHO05D003619 6.8e-09 63.9 57 52.6
Aqoxy2G00490 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 8.9e-09 63.5 65 53.8
Dinv37361 Davidia involucrata HOM05D003116 ORTHO05D003619 8.9e-09 63.5 57 56.1
TPR.G14663 Trifolium pratense HOM05D003116 ORTHO05D003619 1.2e-08 63.2 45 66.7
BcaC09g50563 Brassica carinata HOM05D003116 ORTHO05D003619 2.0e-08 62.4 50 66.0
Peaxi162Scf00110g00082 Petunia axillaris HOM05D003116 ORTHO05D003619 2.0e-08 62.4 68 42.6
arahy.Tifrunner.gnm1.ann1.PEQF49 Arachis hypogaea HOM05D000048 ORTHO05D003619 1.7e-07 59.3 56 55.4
CAN.G541.24 Capsicum annuum HOM05D003116 ORTHO05D003619 8.3e-07 57.0 57 50.9
Solyc10g083770.3 Solanum lycopersicum HOM05D003116 ORTHO05D003619 8.3e-07 57.0 66 47.0
FvH4_6g17270 Fragaria vesca HOM05D003116 ORTHO05D003619 1.1e-06 56.6 38 71.1
Actinidia39860 Actinidia chinensis HOM05D003116 ORTHO05D003619 2.4e-06 55.5 58 48.3
FAN02G4294 Fragaria x ananassa HOM05D003116 ORTHO05D003619 3.1e-06 55.1 58 53.4
Gohir.A04G068200 Gossypium hirsutum HOM05D003116 ORTHO05D003619 3.1e-06 55.1 66 47.0
Cfa023687 Carpinus fangiana HOM05D003116 ORTHO05D003619 9.2e-06 53.5 66 45.5


User provided reference genes

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