Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 0.0e+00 1152.5 742 100.0
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 5.8e-250 867.8 743 79.4
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 5.1e-246 854.7 604 81.6
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 4.8e-228 795.0 601 77.4
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 7.2e-224 781.2 601 76.2
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 1.3e-217 760.4 603 74.1
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 5.0e-217 758.4 525 74.9
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 3.6e-215 752.3 748 65.1
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 6.1e-215 751.5 611 73.8
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 9.7e-213 744.2 600 73.2
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.7e-212 742.3 601 75.2
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 4.8e-212 741.9 601 75.2
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 4.8e-212 741.9 605 74.2
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.3e-209 733.8 605 73.9
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 5.5e-208 728.4 535 73.5
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 7.2e-208 728.0 538 72.9
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.6e-207 726.9 603 74.6
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 3.3e-205 719.2 530 71.7
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 3.3e-205 719.2 601 71.7
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 4.4e-205 718.8 543 71.8
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 1.7e-204 716.8 589 71.3
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 2.2e-204 716.5 532 71.6
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.1e-203 714.1 520 73.7
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 2.0e-202 709.9 527 73.4
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 7.7e-202 708.0 527 72.9
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 6.5e-201 704.9 601 70.7
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 6.5e-201 704.9 527 72.5
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 1.1e-200 704.1 520 72.5
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 2.1e-199 699.9 520 72.1
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.0e-198 695.7 603 70.5
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 5.2e-198 695.3 520 72.5
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 1.2e-197 694.1 610 68.0
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 5.7e-197 691.8 526 71.5
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.3e-196 690.6 526 70.7
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 3.1e-195 686.0 535 69.9
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 2.7e-194 682.9 533 71.1
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.3e-193 679.9 526 69.4
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 3.8e-193 679.1 533 70.7
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 8.6e-193 677.9 599 68.6
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 2.3e-190 669.8 526 69.2
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 1.2e-189 667.5 528 70.5
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 1.5e-189 667.2 650 63.4
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 1.5e-189 667.2 507 71.4
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 5.7e-189 665.2 527 69.1
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 1.2e-186 657.5 523 70.0
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 1.2e-186 657.5 510 69.0
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 2.7e-186 656.4 514 70.0
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 2.9e-185 652.9 515 68.2
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 2.9e-185 652.9 453 74.4
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 2.9e-185 652.9 507 69.2
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 8.6e-185 651.4 538 66.9
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 1.1e-184 651.0 536 66.8
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 7.3e-184 648.3 589 67.2
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 7.3e-184 648.3 499 69.1
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.6e-183 647.1 505 70.9
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 3.6e-183 646.0 532 69.0
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.0e-182 644.4 528 68.0
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 1.4e-182 644.0 628 63.7
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 3.1e-182 642.9 533 65.7
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 8.9e-182 641.3 480 72.3
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 1.3e-180 637.5 534 66.5
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 9.2e-179 631.3 421 76.2
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 1.6e-178 630.6 516 68.2
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 3.5e-178 629.4 526 66.7
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 3.0e-177 626.3 536 64.2
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 8.6e-177 624.8 549 64.5
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 9.5e-176 621.3 408 77.2
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 9.5e-176 621.3 483 68.3
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 1.4e-174 617.5 537 64.2
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.3e-174 616.7 602 63.3
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 2.0e-173 613.6 535 63.9
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 3.4e-173 612.8 537 64.4
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 2.9e-172 609.8 603 62.7
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 8.3e-172 608.2 489 68.3
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 1.4e-171 607.4 507 64.1
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 7.0e-171 605.1 513 64.1
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.2e-170 604.4 453 70.9
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 6.0e-170 602.1 525 62.7
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 1.5e-168 597.4 543 61.5
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 4.4e-165 585.9 612 60.1
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 7.5e-165 585.1 423 70.4
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 1.7e-164 583.9 442 68.3
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 2.2e-164 583.6 600 58.0
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 6.4e-164 582.0 452 67.9
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 1.1e-163 581.3 504 61.5
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 1.2e-162 577.8 537 61.8
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 1.2e-162 577.8 610 61.1
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.1e-162 577.0 392 75.0
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 7.8e-162 575.1 521 60.5
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 3.3e-160 569.7 493 63.5
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 4.3e-160 569.3 482 64.5
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.4e-158 564.3 553 61.8
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 6.0e-154 548.9 442 63.8
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 2.3e-153 547.0 537 59.2
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 8.7e-153 545.0 436 65.4
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 8.1e-151 538.5 464 71.6
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.8e-150 537.3 535 56.4
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 6.9e-150 535.4 548 56.9
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 2.0e-149 533.9 462 61.5
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 7.6e-149 531.9 533 57.4
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 2.1e-146 523.9 507 57.8
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 1.3e-145 521.2 511 58.1
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 5.1e-145 519.2 389 68.1
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 2.5e-144 516.9 449 62.8
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 8.1e-143 511.9 537 57.4
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 5.3e-142 509.2 507 57.6
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 8.4e-140 501.9 481 57.8
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 2.6e-133 480.3 458 58.1
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 2.3e-129 467.2 425 60.0
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 5.8e-125 452.6 434 66.1
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.3e-124 451.4 438 57.8
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 2.5e-123 447.2 376 63.0
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 2.0e-109 401.0 445 50.8
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 2.6e-109 400.6 327 63.6
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 1.4e-107 394.8 344 61.3
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.1e-104 385.2 352 61.6
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 1.5e-101 374.8 425 51.1
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.9e-99 367.9 413 49.2
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 1.2e-98 365.2 422 48.8
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.7e-95 353.6 441 49.0
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.1e-90 337.8 213 77.9
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.1e-90 337.8 314 61.5
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 3.0e-89 334.0 477 46.8
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 2.7e-82 310.8 282 67.0
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.8e-79 300.8 494 42.3
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 8.3e-79 299.3 367 46.6
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 6.8e-73 279.6 209 68.4
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 6.3e-71 273.1 396 45.5
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 5.4e-70 270.0 196 69.4
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 6.4e-47 193.4 191 53.4
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 2.5e-43 181.4 195 53.3
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 1.4e-41 175.6 203 56.2
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.2e-40 172.6 531 28.6
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 2.9e-39 167.9 170 54.7
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 7.6e-32 143.3 141 53.9
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 1.7e-31 142.1 141 53.9
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 7.9e-29 133.3 115 60.9
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 6.6e-28 130.2 138 62.3
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 1.5e-27 129.0 120 57.5
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 1.6e-26 125.6 95 63.2
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 2.1e-26 125.2 394 27.9
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 3.0e-20 104.8 120 60.0
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 9.6e-19 99.8 355 26.5
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 1.1e-17 96.3 86 57.0
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 6.9e-17 93.6 141 44.7
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 6.5e-15 87.0 161 36.0
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.4e-14 85.9 126 44.4
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 2.3e-12 78.6 106 44.3
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 4.3e-11 74.3 114 41.2
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 2.9e-07 61.6 44 70.5
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 5.0e-07 60.8 47 63.8
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 1.9e-06 58.9 136 33.8


User provided reference genes

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