Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p013864 Quercus lobata HOM05D000001 ORTHO05D337726 7.0e-40 166.8 81 100.0
QL09p051878 Quercus lobata HOM05D000001 ORTHO05D000003 1.8e-19 99.0 63 77.8
QL09p051916 Quercus lobata HOM05D000001 ORTHO05D000003 1.3e-17 92.8 52 88.5
QL09p052038 Quercus lobata HOM05D000001 ORTHO05D000003 6.4e-17 90.5 52 86.5
QL09p052079 Quercus lobata HOM05D000001 ORTHO05D000003 6.4e-17 90.5 52 86.5
QL09p052952 Quercus lobata HOM05D000001 ORTHO05D000003 6.4e-17 90.5 52 86.5
QL09p045803 Quercus lobata HOM05D000001 ORTHO05D000003 2.4e-16 88.6 52 86.5
CiPaw.03G146600 Carya illinoinensis HOM05D000001 ORTHO05D000003 4.3e-13 77.8 52 73.1
Ciclev10019402m.g Citrus clementina HOM05D000001 ORTHO05D000003 7.3e-13 77.0 63 60.3
Atru.BG.209.p Acer truncatum HOM05D000001 ORTHO05D000003 2.1e-12 75.5 68 55.9
RcHm_v2.0_Chr6g0284231 Rosa chinensis HOM05D000001 ORTHO05D000003 2.1e-12 75.5 63 60.3
Cfa002590 Carpinus fangiana HOM05D000001 ORTHO05D000003 3.6e-12 74.7 52 71.2
Thecc.01G221900 Theobroma cacao HOM05D000001 ORTHO05D000003 3.6e-12 74.7 52 73.1
Potri.002G245200 Populus trichocarpa HOM05D000001 ORTHO05D000003 6.2e-12 73.9 68 52.9
Haze_24827 Corylus avellana HOM05D000001 ORTHO05D000003 8.1e-12 73.6 52 69.2
Haze_24832 Corylus avellana HOM05D000001 ORTHO05D000003 8.1e-12 73.6 52 69.2
TWI75G0709 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 4.0e-11 71.2 52 67.3
FvH4_2g18670 Fragaria vesca HOM05D000001 ORTHO05D000003 5.2e-11 70.9 63 57.1
Sabra02G0186600 Salix brachista HOM05D000001 ORTHO05D000003 6.8e-11 70.5 68 50.0
MD05G1172600 Malus domestica HOM05D000001 ORTHO05D000003 8.9e-11 70.1 63 58.7
FAN15G1903 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.2e-10 69.7 63 57.1
FAN24G1224 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.2e-10 69.7 63 55.6
Lj2P1127T27 Lonicera japonica HOM05D000001 ORTHO05D000003 1.5e-10 69.3 63 58.7
FAN27G1717 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.6e-10 68.6 63 55.6
Gohir.D07G206300 Gossypium hirsutum HOM05D000001 ORTHO05D000003 2.6e-10 68.6 63 57.1
Sopen09g022760 Solanum pennellii HOM05D000001 ORTHO05D000003 3.4e-10 68.2 68 52.9
PGSC0003DMG400045417 Solanum tuberosum HOM05D000001 ORTHO05D000003 3.4e-10 68.2 68 52.9
Gorai.001G232600 Gossypium raimondii HOM05D000001 ORTHO05D000003 4.4e-10 67.8 63 57.1
CAN.G260.5 Capsicum annuum HOM05D000001 ORTHO05D000003 5.8e-10 67.4 68 52.9
Actinidia30061 Actinidia chinensis HOM05D000001 ORTHO05D000003 7.5e-10 67.0 63 54.0
CANSAT56G1204 Cannabis sativa HOM05D000001 ORTHO05D000003 9.9e-10 66.6 63 55.6
Ah.15g093960 Amaranthus hybridus HOM05D000001 ORTHO05D000003 1.7e-09 65.9 69 44.9
Cc01_g16810 Coffea canephora HOM05D000001 ORTHO05D000003 2.2e-09 65.5 52 63.5
Hma1.2p1_0149F.1_g066330 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 2.2e-09 65.5 52 59.6
PSO832G1987 Papaver somniferum HOM05D000001 ORTHO05D000003 2.9e-09 65.1 52 61.5
Nitab4.5_0000345g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 3.7e-09 64.7 68 50.0
Nitab4.5_0000045g0430 Nicotiana tabacum HOM05D000001 ORTHO05D000003 8.3e-09 63.5 68 48.5
Lsat_1_v5_gn_9_13021 Lactuca sativa HOM05D000001 ORTHO05D000003 1.1e-08 63.2 66 50.0
Migut.D02497 Erythranthe guttata HOM05D000001 ORTHO05D000003 4.1e-08 61.2 52 53.8
PGR083G2601 Punica granatum HOM05D000001 ORTHO05D000003 5.4e-08 60.8 66 48.5
Sc05g0002000 Simmondsia chinensis HOM05D000001 ORTHO05D000003 5.4e-08 60.8 63 46.0
AT3G25060 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 1.2e-07 59.7 63 42.9
FAN28G2428 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.2e-07 59.7 67 44.8
CARHR101340 Cardamine hirsuta HOM05D000001 ORTHO05D000003 1.6e-07 59.3 52 50.0
Actinidia31464 Actinidia chinensis HOM05D000001 ORTHO05D056473 2.7e-07 58.5 60 50.0
EL10Ac7g17880 Beta vulgaris HOM05D000001 ORTHO05D000003 2.7e-07 58.5 69 43.5
THA.LOC104808791 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 2.7e-07 58.5 64 48.4
AUR62001119 Chenopodium quinoa HOM05D000001 ORTHO05D000003 3.5e-07 58.2 69 40.6
AUR62016557 Chenopodium quinoa HOM05D000001 ORTHO05D000003 3.5e-07 58.2 64 43.8
FAN26G1097 Fragaria x ananassa HOM05D000001 ORTHO05D004838 3.5e-07 58.2 67 43.3
Sp3g22660 Schrenkiella parvula HOM05D000001 ORTHO05D000003 3.5e-07 58.2 63 39.7
Thhalv10002452m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 6.0e-07 57.4 63 44.4
SalBow6G2968 Salvia bowleyana HOM05D000001 ORTHO05D000003 6.0e-07 57.4 52 53.8
Os10g0540100 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 7.8e-07 57.0 64 45.3
SalBow6G4069 Salvia bowleyana HOM05D000001 ORTHO05D000003 7.8e-07 57.0 52 53.8
BcaB08g34430 Brassica carinata HOM05D000001 ORTHO05D000003 1.0e-06 56.6 68 39.7
A03p44000 Brassica napus HOM05D000001 ORTHO05D000003 1.0e-06 56.6 68 41.2
BraA03t13531Z Brassica rapa HOM05D000001 ORTHO05D000003 1.0e-06 56.6 68 41.2
DCAR_012660 Daucus carota HOM05D000001 ORTHO05D000003 1.0e-06 56.6 63 46.0
BcaC01g03248 Brassica carinata HOM05D000001 ORTHO05D000003 1.3e-06 56.2 68 41.2
HPP92_021422 Vanilla planifolia HOM05D000001 ORTHO05D000003 1.3e-06 56.2 63 41.3
HPP92_021425 Vanilla planifolia HOM05D000001 ORTHO05D000003 1.3e-06 56.2 63 41.3
FvH4_1g20280 Fragaria vesca HOM05D000001 ORTHO05D000003 1.7e-06 55.8 67 41.8
RcHm_v2.0_Chr2g0112421 Rosa chinensis HOM05D000001 ORTHO05D000003 1.7e-06 55.8 63 42.9
Lj4A899T59 Lonicera japonica HOM05D000001 ORTHO05D000003 2.3e-06 55.5 52 51.9
C03p54350 Brassica napus HOM05D000001 ORTHO05D000003 3.0e-06 55.1 68 39.7
BolC3t17723H Brassica oleracea HOM05D000001 ORTHO05D000003 3.0e-06 55.1 68 39.7
Lj4g0010528 Lotus japonicus HOM05D000001 ORTHO05D000003 3.9e-06 54.7 63 39.7
FAN19G1185 Fragaria x ananassa HOM05D002324 ORTHO05D002380 5.1e-06 54.3 67 40.3
Lsat_1_v5_gn_2_31020 Lactuca sativa HOM05D000001 ORTHO05D000003 5.1e-06 54.3 81 40.7
QL09p052887 Quercus lobata HOM05D000001 ORTHO05D337845 6.6e-06 53.9 40 67.5
Solyc06g009500.1 Solanum lycopersicum HOM05D000001 ORTHO05D010033 6.6e-06 53.9 63 46.0
Manes.04G051200 Manihot esculenta HOM05D000001 ORTHO05D000003 8.6e-06 53.5 63 46.0


User provided reference genes

Program Settings