Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 5.4e-185 651.0 360 100.0
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 8.3e-117 424.5 360 67.2
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 7.7e-115 417.9 384 65.6
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 2.5e-105 386.3 345 65.8
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 1.4e-100 370.5 337 68.0
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 7.3e-97 358.2 361 62.3
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 1.1e-95 354.4 362 59.7
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 2.0e-94 350.1 356 60.1
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 8.6e-90 334.7 364 59.1
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 1.1e-89 334.3 358 56.1
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 1.1e-89 334.3 358 56.1
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 7.3e-89 331.6 310 64.8
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 3.6e-88 329.3 281 73.7
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 1.1e-87 327.8 280 66.4
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 8.9e-87 324.7 351 58.7
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 2.0e-86 323.6 357 58.5
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 5.8e-86 322.0 333 62.5
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 5.8e-86 322.0 341 62.2
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 6.4e-85 318.5 326 59.5
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.4e-84 317.4 333 61.9
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 4.1e-84 315.8 282 70.2
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 4.1e-84 315.8 326 58.9
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 5.4e-84 315.5 341 59.2
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.2e-83 314.3 341 61.0
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 3.5e-83 312.8 336 58.9
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.3e-82 310.1 333 61.0
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 3.0e-82 309.7 341 57.5
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 1.9e-81 307.0 278 68.7
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.9e-81 307.0 330 59.1
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 2.5e-81 306.6 342 57.6
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 5.2e-79 298.9 355 58.3
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 7.6e-78 295.0 323 59.8
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 1.3e-77 294.3 329 56.8
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 1.1e-76 291.2 261 72.4
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 2.4e-76 290.0 360 55.0
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 7.1e-76 288.5 192 78.1
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.1e-75 287.0 375 54.7
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 3.9e-74 282.7 357 53.5
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 1.3e-72 277.7 317 57.4
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 4.8e-72 275.8 369 48.5
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 1.4e-71 274.2 324 54.9
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.8e-71 273.9 348 55.5
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 3.1e-71 273.1 171 80.7
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 3.1e-71 273.1 317 54.9
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 6.9e-71 271.9 306 52.3
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 1.2e-70 271.2 190 74.7
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 2.0e-70 270.4 188 77.1
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.0e-70 270.4 188 77.1
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 3.4e-70 269.6 379 51.7
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 7.6e-70 268.5 339 50.4
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 9.9e-70 268.1 328 54.3
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.2e-69 266.9 379 53.0
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 1.1e-68 264.6 180 73.3
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 3.2e-68 263.1 174 75.9
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 3.2e-68 263.1 349 51.9
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 5.4e-68 262.3 174 75.3
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 5.4e-68 262.3 174 75.3
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 5.4e-68 262.3 174 75.3
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 1.6e-67 260.8 334 49.1
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 1.6e-67 260.8 328 50.3
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 2.7e-67 260.0 342 53.8
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 3.5e-67 259.6 383 48.0
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 3.5e-67 259.6 314 54.1
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 7.9e-67 258.5 177 74.6
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.0e-66 258.1 285 61.4
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.0e-66 258.1 369 49.9
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 1.3e-66 257.7 173 75.1
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 1.3e-66 257.7 353 52.7
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 3.0e-66 256.5 337 51.9
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 5.1e-66 255.8 188 73.9
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 2.5e-65 253.4 306 56.9
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 4.3e-65 252.7 326 51.2
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 5.6e-65 252.3 186 75.3
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 7.3e-65 251.9 328 54.6
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 9.6e-65 251.5 319 53.6
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 2.1e-64 250.4 191 71.7
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 8.1e-64 248.4 329 51.1
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.8e-63 247.3 321 50.8
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 3.1e-63 246.5 243 58.8
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 2.6e-62 243.4 172 71.5
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 7.6e-62 241.9 368 47.3
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 9.9e-62 241.5 183 72.7
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 2.2e-61 240.4 261 56.3
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 6.4e-61 238.8 183 68.9
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 8.4e-61 238.4 172 72.7
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 1.1e-60 238.0 317 52.1
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 3.2e-60 236.5 359 47.1
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 1.2e-59 234.6 175 73.1
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 2.3e-58 230.3 159 73.0
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 3.0e-58 229.9 371 47.4
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 6.7e-58 228.8 330 47.3
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 4.3e-57 226.1 178 67.4
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 4.8e-56 222.6 365 47.7
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 1.4e-55 221.1 306 46.4
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 2.4e-55 220.3 357 48.7
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 1.5e-54 217.6 387 44.2
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 4.5e-54 216.1 188 67.6
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 1.4e-52 211.1 168 64.9
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 9.6e-49 198.4 141 72.3
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 9.6e-49 198.4 141 72.3
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 1.6e-48 197.6 168 61.9
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 1.4e-47 194.5 167 61.1
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 1.4e-47 194.5 248 51.6
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 2.2e-45 187.2 124 75.0
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 3.5e-43 179.9 335 44.5
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 8.7e-42 175.3 104 83.7
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 1.3e-37 161.4 118 74.6
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 2.1e-35 154.1 124 66.9
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 8.5e-29 132.1 110 68.2
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 8.5e-29 132.1 171 44.4
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 7.9e-27 125.6 169 42.0
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 2.0e-25 120.9 71 84.5
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 3.3e-25 120.2 152 53.3
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 4.4e-25 119.8 215 47.0
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 1.3e-24 118.2 64 92.2
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 3.5e-22 110.2 106 61.3
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 5.5e-20 102.8 247 35.6
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 5.2e-18 96.3 150 48.7
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 2.8e-16 90.5 73 68.5
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 7.0e-15 85.9 145 48.3
Haze_02796 Corylus avellana HOM05D006300 ORTHO05D007623 1.9e-12 77.8 76 56.6
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 5.5e-12 76.3 107 46.7
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 9.4e-12 75.5 40 87.5
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 1.6e-11 74.7 79 51.9
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 3.6e-11 73.6 39 87.2
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 3.4e-09 67.0 48 70.8
arahy.Tifrunner.gnm1.ann1.24L57E Arachis hypogaea HOM05D006300 ORTHO05D007623 3.7e-08 63.5 76 53.9
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 3.7e-08 63.5 41 70.7
TPR.G8429 Trifolium pratense HOM05D006300 ORTHO05D007623 4.1e-07 60.1 53 58.5


User provided reference genes

Program Settings