Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p008929 Quercus lobata HOM05D002270 ORTHO05D338108 2.0e-161 572.4 290 100.0
QL11p042250 Quercus lobata HOM05D000011 ORTHO05D000018 4.8e-91 338.6 199 90.5
QL12p000414 Quercus lobata HOM05D000027 ORTHO05D000066 2.8e-54 216.5 126 92.1
QL07p025891 Quercus lobata HOM05D002116 ORTHO05D002438 4.0e-53 212.6 145 67.6
QL04p022016 Quercus lobata HOM05D000004 ORTHO05D000002 6.4e-27 125.6 74 82.4
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 2.4e-13 80.5 141 40.4
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 4.0e-13 79.7 141 40.4
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 6.9e-13 79.0 141 39.7
Hma1.2p1_0291F.1_g115290 Hydrangea macrophylla HOM05D002270 ORTHO05D002866 9.0e-13 78.6 141 39.0
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 1.5e-12 77.8 141 39.0
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 2.6e-12 77.0 141 39.0
COL.COLO4_12564 Corchorus olitorius HOM05D002270 ORTHO05D002866 2.6e-12 77.0 141 37.6
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 2.6e-12 77.0 147 38.1
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 2.6e-12 77.0 147 38.1
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 2.6e-12 77.0 155 36.8
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 3.4e-12 76.6 144 38.2
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 3.4e-12 76.6 141 38.3
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 4.5e-12 76.3 144 38.9
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 4.5e-12 76.3 145 37.9
vmacro22216 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 4.5e-12 76.3 141 39.0
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 5.8e-12 75.9 142 40.1
QL03p018747 Quercus lobata HOM05D002270 ORTHO05D002866 5.8e-12 75.9 56 69.6
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 7.6e-12 75.5 141 39.0
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 1.3e-11 74.7 141 39.7
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 1.3e-11 74.7 147 37.4
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 1.3e-11 74.7 141 37.6
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 1.7e-11 74.3 141 37.6
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 1.7e-11 74.3 141 36.9
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 2.2e-11 73.9 92 47.8
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 2.2e-11 73.9 141 36.9
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 2.2e-11 73.9 141 37.6
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 2.2e-11 73.9 141 36.9
Eucgr.J02835 Eucalyptus grandis HOM05D002270 ORTHO05D002866 2.9e-11 73.6 136 39.7
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 3.8e-11 73.2 141 38.3
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 4.9e-11 72.8 141 36.9
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 4.9e-11 72.8 141 36.9
VMungo0464G0658 Vigna mungo HOM05D002270 ORTHO05D002866 4.9e-11 72.8 141 37.6
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 6.4e-11 72.4 141 36.9
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 8.4e-11 72.0 141 36.9
MBI17_g19031_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D002866 8.4e-11 72.0 141 36.2
TPR.G51 Trifolium pratense HOM05D002270 ORTHO05D002866 8.4e-11 72.0 92 46.7
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 1.1e-10 71.6 141 36.2
TAR636G2258 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.4e-10 71.2 136 38.2
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 1.9e-10 70.9 141 36.9
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.4e-10 70.5 141 35.5
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 2.4e-10 70.5 141 37.6
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 2.4e-10 70.5 144 36.8
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 3.2e-10 70.1 141 37.6
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 4.2e-10 69.7 195 31.8
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 4.2e-10 69.7 195 31.8
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 4.2e-10 69.7 195 31.8
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 4.2e-10 69.7 195 31.8
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 4.2e-10 69.7 138 37.0
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 5.4e-10 69.3 56 64.3
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 5.4e-10 69.3 56 64.3
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 5.4e-10 69.3 141 37.6
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 7.1e-10 68.9 141 36.2
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 9.3e-10 68.6 141 36.9
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 9.3e-10 68.6 141 36.2
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 1.2e-09 68.2 141 36.9
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 1.2e-09 68.2 141 34.8
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 1.6e-09 67.8 141 34.8
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 1.6e-09 67.8 139 36.0
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 1.6e-09 67.8 141 34.8
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 2.1e-09 67.4 137 36.5
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 3.5e-09 66.6 141 34.0
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 4.6e-09 66.2 141 34.0
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 6.0e-09 65.9 141 36.9
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 6.0e-09 65.9 141 34.8
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 6.0e-09 65.9 141 34.0
Sed0006033 Sechium edule HOM05D002270 ORTHO05D002866 7.9e-09 65.5 141 35.5
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 1.0e-08 65.1 56 60.7
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 1.0e-08 65.1 144 35.4
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 1.8e-08 64.3 141 34.0
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 1.8e-08 64.3 92 42.4
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 2.3e-08 63.9 141 34.0
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 2.3e-08 63.9 136 36.0
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 2.3e-08 63.9 144 33.3
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 3.0e-08 63.5 141 34.0
CDE12G0817 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 3.0e-08 63.5 144 33.3
Os10g0456900 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 5.1e-08 62.8 145 33.1
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 8.7e-08 62.0 141 33.3
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 8.7e-08 62.0 141 33.3
VMungo1080G1592 Vigna mungo HOM05D002270 ORTHO05D002866 1.1e-07 61.6 151 38.4
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 1.5e-07 61.2 136 36.0
FAN09G1018 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.5e-07 61.2 193 31.1
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 1.5e-07 61.2 141 33.3
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 1.5e-07 61.2 145 34.5
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 2.5e-07 60.5 142 33.1
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 3.3e-07 60.1 142 33.1
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 3.3e-07 60.1 141 32.6
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 5.6e-07 59.3 56 53.6
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 6.2e-06 55.8 141 29.1
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 8.1e-06 55.5 142 30.3
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 8.1e-06 55.5 56 50.0


User provided reference genes

Program Settings