Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 7.4e-95 350.5 176 100.0
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.3e-83 313.2 176 89.2
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 2.9e-83 312.0 176 89.2
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.5e-79 299.7 168 90.5
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 7.5e-79 297.4 176 85.8
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 7.5e-79 297.4 176 86.4
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 6.3e-78 294.3 177 84.7
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 8.2e-78 293.9 177 86.4
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.2e-76 290.0 179 84.9
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 1.2e-76 290.0 177 83.6
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.6e-76 289.7 176 84.7
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.0e-76 289.3 176 85.8
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 3.5e-76 288.5 178 82.6
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 4.5e-76 288.1 176 84.7
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 5.9e-76 287.7 176 84.1
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 7.7e-76 287.3 175 84.6
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 2.2e-75 285.8 176 84.1
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.9e-75 285.4 179 82.1
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 5.0e-75 284.6 179 81.6
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 6.5e-75 284.3 176 82.4
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 8.5e-75 283.9 177 81.4
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.9e-74 282.7 176 83.5
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 1.9e-74 282.7 178 83.1
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.5e-74 282.3 176 80.7
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 3.2e-74 282.0 176 84.1
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 7.2e-74 280.8 181 81.8
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 7.2e-74 280.8 179 81.6
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 9.4e-74 280.4 176 80.1
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.6e-73 279.6 176 80.7
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 1.6e-73 279.6 175 81.7
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.6e-73 279.6 175 81.7
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.6e-73 279.6 177 80.8
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.6e-73 279.6 177 80.8
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 1.6e-73 279.6 179 81.6
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 1.6e-73 279.6 179 81.6
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 2.1e-73 279.3 178 80.3
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 2.1e-73 279.3 177 81.4
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.0e-72 276.9 175 81.1
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.0e-72 275.4 175 80.6
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 8.8e-72 273.9 176 79.5
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 2.0e-71 272.7 176 80.7
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 2.6e-71 272.3 176 79.5
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 4.4e-71 271.6 178 79.8
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 9.8e-71 270.4 174 80.5
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 9.8e-71 270.4 176 79.0
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.7e-70 269.6 177 78.5
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.7e-70 269.6 178 78.7
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 2.2e-70 269.2 173 80.3
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 2.2e-70 269.2 176 80.1
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.2e-70 269.2 174 81.0
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 2.8e-70 268.9 176 77.3
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 1.1e-69 266.9 177 76.8
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 1.8e-69 266.2 174 78.2
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 2.4e-69 265.8 180 77.8
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 4.1e-69 265.0 178 78.1
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 4.1e-69 265.0 180 75.6
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 5.4e-69 264.6 165 81.2
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.6e-68 263.1 177 75.1
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.7e-68 262.3 177 75.7
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 3.5e-68 261.9 177 76.3
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 3.5e-68 261.9 179 77.7
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 3.5e-68 261.9 179 75.4
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 4.5e-68 261.5 177 76.8
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 4.5e-68 261.5 177 76.8
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 4.5e-68 261.5 178 75.3
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 5.9e-68 261.2 177 76.8
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 5.9e-68 261.2 178 75.3
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 7.7e-68 260.8 177 76.3
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 1.0e-67 260.4 177 76.3
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 1.0e-67 260.4 177 76.3
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 1.3e-67 260.0 176 78.4
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.3e-67 260.0 185 76.8
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 2.3e-67 259.2 172 76.7
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 2.9e-67 258.8 178 77.5
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 2.9e-67 258.8 181 75.1
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.8e-67 258.5 175 76.6
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 5.0e-67 258.1 182 75.3
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 5.0e-67 258.1 185 74.6
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 5.0e-67 258.1 185 74.6
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 6.5e-67 257.7 185 76.2
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.5e-66 256.5 180 73.9
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 1.5e-66 256.5 178 75.3
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 2.5e-66 255.8 185 74.6
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 4.2e-66 255.0 182 75.3
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 5.5e-66 254.6 180 76.1
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 7.2e-66 254.2 185 74.6
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 9.5e-66 253.8 180 75.0
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.8e-65 252.3 178 72.5
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.8e-65 252.3 178 72.5
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 3.6e-65 251.9 173 74.6
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 3.6e-65 251.9 176 75.0
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.0e-64 250.4 178 74.2
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 3.0e-64 248.8 180 71.7
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 3.0e-64 248.8 177 70.6
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.2e-63 246.9 177 72.9
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 2.6e-63 245.7 192 68.8
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 4.4e-63 245.0 176 72.7
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 7.5e-63 244.2 179 70.9
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 9.8e-63 243.8 179 70.9
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 1.3e-62 243.4 183 73.8
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 2.2e-62 242.7 182 70.3
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 6.3e-62 241.1 175 72.0
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 6.3e-62 241.1 180 70.0
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 6.3e-62 241.1 179 73.2
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 8.3e-62 240.7 176 71.6
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 8.3e-62 240.7 176 70.5
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 1.4e-61 240.0 179 72.6
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 4.1e-61 238.4 177 69.5
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 4.1e-61 238.4 153 77.1
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 5.4e-61 238.0 180 69.4
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 2.7e-60 235.7 176 68.8
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 3.5e-60 235.3 183 68.9
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 5.9e-60 234.6 179 71.5
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 7.8e-60 234.2 178 69.7
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.3e-59 233.4 173 71.1
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 2.3e-59 232.6 179 69.3
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.3e-59 232.6 178 69.1
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 3.8e-59 231.9 172 72.1
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.1e-58 230.3 175 69.7
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.1e-58 230.3 170 70.6
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 1.5e-58 229.9 176 67.6
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 4.3e-58 228.4 167 71.3
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 5.6e-58 228.0 153 74.5
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 1.2e-57 226.9 171 67.8
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 2.3e-56 222.6 157 77.1
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 2.0e-55 219.5 253 52.2
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 1.3e-54 216.9 170 66.5
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 2.4e-53 212.6 179 64.2
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 2.4e-53 212.6 193 64.8
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.6e-52 209.9 121 84.3
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 2.0e-52 209.5 157 70.7
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.2e-49 200.3 179 58.7
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 6.8e-48 194.5 176 61.4
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 2.6e-47 192.6 153 61.4
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 2.2e-46 189.5 175 58.9
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.9e-45 186.4 192 58.3
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 3.2e-45 185.7 200 57.5
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 2.0e-44 183.0 133 66.9
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 6.0e-44 181.4 183 55.2
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.3e-38 163.7 122 68.9
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.6e-36 155.2 86 86.0
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.6e-36 155.2 176 50.6
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.3e-35 153.7 175 50.3
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.0e-35 152.5 86 83.7
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 9.5e-34 147.5 129 62.0
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 3.1e-32 142.5 89 80.9
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 5.2e-32 141.7 112 67.9
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 5.8e-31 138.3 117 67.5
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 7.1e-29 131.3 124 58.9
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 3.0e-27 125.9 118 60.2
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.5e-23 113.6 125 45.6
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 5.8e-23 111.7 84 70.2
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 7.6e-23 111.3 127 48.8
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 9.9e-23 110.9 90 62.2
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 3.8e-22 109.0 105 46.7
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 9.3e-21 104.4 95 60.0
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 9.3e-21 104.4 95 60.0
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.4e-16 89.7 46 89.1
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 9.0e-16 87.8 158 34.8
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 1.0e-11 74.3 80 51.2
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 3.9e-11 72.4 65 58.5
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 5.1e-11 72.0 89 39.3
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.3e-09 67.4 79 51.9
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 2.1e-09 66.6 95 44.2
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.1e-08 64.3 190 32.6
MBI13_g11352_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 8.4e-06 54.7 47 57.4


User provided reference genes

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