Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p095610 Quercus lobata HOM05D004132 ORTHO05D018522 1.5e-98 362.8 181 100.0
Haze_06152 Corylus avellana HOM05D004132 ORTHO05D006273 3.9e-30 135.6 165 48.5
Ciclev10011787m.g Citrus clementina HOM05D004132 ORTHO05D006273 1.2e-28 130.6 165 46.7
QL04p095526 Quercus lobata HOM05D004132 ORTHO05D006273 6.2e-28 128.3 165 47.9
Cfa000667 Carpinus fangiana HOM05D004132 ORTHO05D006273 1.4e-27 127.1 165 46.7
CiPaw.09G074000 Carya illinoinensis HOM05D004132 ORTHO05D006273 2.3e-27 126.3 165 46.1
Duzib151G0861 Durio zibethinus HOM05D004132 ORTHO05D006273 3.1e-27 125.9 165 46.1
Glyma.18G291800 Glycine max HOM05D004132 ORTHO05D006273 3.1e-27 125.9 165 46.7
Lsat_1_v5_gn_8_118000 Lactuca sativa HOM05D004132 ORTHO05D006273 4.0e-27 125.6 165 45.5
THA.LOC104800472 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 5.2e-27 125.2 165 46.7
Dinv31163 Davidia involucrata HOM05D004132 ORTHO05D006273 8.9e-27 124.4 165 44.8
Glyma.02G091300 Glycine max HOM05D004132 ORTHO05D006273 1.2e-26 124.0 165 46.1
arahy.Tifrunner.gnm1.ann1.KJS3LB Arachis hypogaea HOM05D004132 ORTHO05D006273 1.5e-26 123.6 165 45.5
arahy.Tifrunner.gnm1.ann1.L32XPY Arachis hypogaea HOM05D004132 ORTHO05D006273 1.5e-26 123.6 165 45.5
Lj6g0002780 Lotus japonicus HOM05D004132 ORTHO05D006273 1.5e-26 123.6 165 46.1
GSVIVG01010923001 Vitis vinifera HOM05D004132 ORTHO05D006273 1.5e-26 123.6 165 46.1
THA.LOC104826464 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 2.0e-26 123.2 165 45.5
Thecc.04G197300 Theobroma cacao HOM05D004132 ORTHO05D006273 2.0e-26 123.2 165 45.5
MD05G1248600 Malus domestica HOM05D004132 ORTHO05D006273 2.6e-26 122.9 165 45.5
MD10G1229100 Malus domestica HOM05D004132 ORTHO05D006273 2.6e-26 122.9 165 45.5
Prupe.4G115500 Prunus persica HOM05D004132 ORTHO05D006273 2.6e-26 122.9 165 45.5
Cpa.g.sc84.15 Carica papaya HOM05D004132 ORTHO05D006273 3.4e-26 122.5 165 44.8
COL.COLO4_20206 Corchorus olitorius HOM05D004132 ORTHO05D006273 3.4e-26 122.5 165 44.8
ECA232G2283 Erigeron canadensis HOM05D004132 ORTHO05D006273 3.4e-26 122.5 165 43.6
Phvul.008G010100 Phaseolus vulgaris HOM05D004132 ORTHO05D006273 4.4e-26 122.1 165 44.8
Sed0002662 Sechium edule HOM05D004132 ORTHO05D006273 4.4e-26 122.1 166 46.4
TAR627G0383 Trochodendron aralioides HOM05D004132 ORTHO05D018522 4.4e-26 122.1 165 44.8
CSS0017532 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D006273 7.5e-26 121.3 165 43.6
Gohir.D10G139300 Gossypium hirsutum HOM05D004132 ORTHO05D006273 7.5e-26 121.3 165 44.2
Gorai.011G155000 Gossypium raimondii HOM05D004132 ORTHO05D006273 7.5e-26 121.3 165 44.2
HanXRQChr12g0367151 Helianthus annuus HOM05D004132 ORTHO05D006273 7.5e-26 121.3 165 43.6
PGR102G2051 Punica granatum HOM05D004132 ORTHO05D006273 7.5e-26 121.3 172 42.4
Dinv25393 Davidia involucrata HOM05D004132 ORTHO05D006273 9.8e-26 120.9 165 43.6
Gohir.A10G126900 Gossypium hirsutum HOM05D004132 ORTHO05D006273 9.8e-26 120.9 165 44.2
Hma1.2p1_0325F.1_g126090 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 9.8e-26 120.9 165 44.8
Lalb_Chr17g0336121 Lupinus albus HOM05D004132 ORTHO05D006273 9.8e-26 120.9 165 44.8
Psat3g096280 Pisum sativum HOM05D004132 ORTHO05D006273 9.8e-26 120.9 165 44.8
VMungo1383G0131 Vigna mungo HOM05D004132 ORTHO05D006273 9.8e-26 120.9 165 44.8
Eucgr.C02274 Eucalyptus grandis HOM05D004132 ORTHO05D006273 1.3e-25 120.6 165 44.2
Eucgr.C02393 Eucalyptus grandis HOM05D004132 ORTHO05D006273 1.3e-25 120.6 165 44.2
Lj5g0016492 Lotus japonicus HOM05D004132 ORTHO05D006273 1.3e-25 120.6 165 45.5
Medtr7g083030 Medicago truncatula HOM05D004132 ORTHO05D006273 1.3e-25 120.6 165 44.2
TAR626G0350 Trochodendron aralioides HOM05D004132 ORTHO05D006273 2.2e-25 119.8 165 43.0
Ca_06096_v3 Cicer arietinum L. HOM05D004132 ORTHO05D006273 2.9e-25 119.4 165 44.2
DCAR_001290 Daucus carota HOM05D004132 ORTHO05D006273 2.9e-25 119.4 165 42.4
Nn6g34644 Nelumbo nucifera HOM05D004132 ORTHO05D006273 6.4e-25 118.2 165 43.0
Os12g0533700 Oryza sativa ssp. japonica HOM05D004132 ORTHO05D006273 6.4e-25 118.2 165 43.0
Potri.013G105200 Populus trichocarpa HOM05D004132 ORTHO05D006273 6.4e-25 118.2 165 44.8
Sed0008608 Sechium edule HOM05D004132 ORTHO05D006273 6.4e-25 118.2 166 46.4
Solyc05g056260.2 Solanum lycopersicum HOM05D004132 ORTHO05D006273 6.4e-25 118.2 165 43.6
Sopen05g034650 Solanum pennellii HOM05D004132 ORTHO05D006273 6.4e-25 118.2 165 43.6
PGSC0003DMG400023334 Solanum tuberosum HOM05D004132 ORTHO05D006273 6.4e-25 118.2 165 43.6
Rhsim04G0004400 Rhododendron simsii HOM05D004132 ORTHO05D006273 8.3e-25 117.9 165 43.6
HanXRQChr09g0260401 Helianthus annuus HOM05D004132 ORTHO05D018522 1.1e-24 117.5 165 42.4
MBI07_g09898_MAGBIO Magnolia biondii HOM05D004132 ORTHO05D006273 1.1e-24 117.5 165 43.0
Lj1g0015918 Lotus japonicus HOM05D004132 ORTHO05D006273 1.4e-24 117.1 165 44.8
CAN.G1921.3 Capsicum annuum HOM05D004132 ORTHO05D006273 1.9e-24 116.7 165 43.0
Oeu018076.1 Olea europaea HOM05D004132 ORTHO05D006273 1.9e-24 116.7 165 43.0
CANSAT78G2113 Cannabis sativa HOM05D004132 ORTHO05D006273 2.4e-24 116.3 165 44.2
Cc09_g05560 Coffea canephora HOM05D004132 ORTHO05D006273 2.4e-24 116.3 165 42.4
ClCG01G025610 Citrullus lanatus HOM05D004132 ORTHO05D006273 3.2e-24 115.9 166 45.8
Hund00133 Selenicereus undatus HOM05D004132 ORTHO05D006273 3.2e-24 115.9 165 42.4
GSVIVG01020308001 Vitis vinifera HOM05D004132 ORTHO05D018522 3.2e-24 115.9 165 44.2
Sabra13G0090900 Salix brachista HOM05D004132 ORTHO05D006273 5.4e-24 115.2 164 43.9
SalBow7G0375 Salvia bowleyana HOM05D004132 ORTHO05D006273 5.4e-24 115.2 165 42.4
SGA_v2.0_scaffold298G47699 Striga asiatica HOM05D004132 ORTHO05D006273 5.4e-24 115.2 165 42.4
SGA_v2.0_scaffold175G39350 Striga asiatica HOM05D004132 ORTHO05D006273 7.0e-24 114.8 165 42.4
Aa31LG10G12860 Aethionema arabicum HOM05D004132 ORTHO05D006273 9.2e-24 114.4 165 43.6
Migut.D01293 Erythranthe guttata HOM05D004132 ORTHO05D006273 9.2e-24 114.4 165 42.4
Sc08g0001660 Simmondsia chinensis HOM05D004132 ORTHO05D006273 9.2e-24 114.4 165 41.8
GSVIVG01020339001 Vitis vinifera HOM05D004132 ORTHO05D006273 9.2e-24 114.4 165 43.0
Atru.chr3.3175 Acer truncatum HOM05D004132 ORTHO05D006273 1.2e-23 114.0 165 42.4
Aqoxy2G02279 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 1.2e-23 114.0 165 42.4
CsaV3_6G052840 Cucumis sativus L. HOM05D004132 ORTHO05D006273 1.2e-23 114.0 166 45.2
ATR0215G010 Amborella trichopoda HOM05D004132 ORTHO05D006273 1.6e-23 113.6 165 44.8
MELO3C007024.2 Cucumis melo HOM05D004132 ORTHO05D006273 1.6e-23 113.6 166 45.2
PSO063G4358 Papaver somniferum HOM05D004132 ORTHO05D006273 1.6e-23 113.6 165 41.8
PSO421G0604 Papaver somniferum HOM05D004132 ORTHO05D006273 1.6e-23 113.6 165 41.8
Peaxi162Scf00858g00012 Petunia axillaris HOM05D004132 ORTHO05D006273 1.6e-23 113.6 165 42.4
MSTRG.16365 Avicennia marina HOM05D004132 ORTHO05D006273 2.7e-23 112.8 165 41.2
FAN16G0015 Fragaria x ananassa HOM05D004132 ORTHO05D006273 3.5e-23 112.5 165 43.0
FAN25G0118 Fragaria x ananassa HOM05D004132 ORTHO05D006273 4.6e-23 112.1 165 43.0
FvH4_3g12680 Fragaria vesca HOM05D004132 ORTHO05D006273 7.8e-23 111.3 165 43.0
RcHm_v2.0_Chr5g0020641 Rosa chinensis HOM05D004132 ORTHO05D006273 7.8e-23 111.3 165 43.0
RcHm_v2.0_Chr3g0486261 Rosa chinensis HOM05D004132 ORTHO05D006273 1.0e-22 110.9 165 42.4
Sp5g04580 Schrenkiella parvula HOM05D004132 ORTHO05D006273 1.3e-22 110.5 165 42.4
unitig_37.g12049 Utricularia gibba HOM05D004132 ORTHO05D006273 1.3e-22 110.5 165 41.8
Aqoxy7G00307 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 1.7e-22 110.2 165 40.6
Thhalv10005992m.g Eutrema salsugineum HOM05D004132 ORTHO05D006273 3.0e-22 109.4 165 41.8
Zm00001eb371320 Zea mays HOM05D004132 ORTHO05D006273 3.0e-22 109.4 165 41.8
CARHR168500 Cardamine hirsuta HOM05D004132 ORTHO05D006273 3.9e-22 109.0 165 41.2
Pp3c5_15740 Physcomitrium patens HOM05D004132 ORTHO05D006273 3.9e-22 109.0 166 44.0
Carub.0005s2499 Capsella rubella HOM05D004132 ORTHO05D006273 6.6e-22 108.2 165 41.2
Ah.06g194990 Amaranthus hybridus HOM05D004132 ORTHO05D006273 8.6e-22 107.8 165 42.4
Zm00001eb153980 Zea mays HOM05D004132 ORTHO05D006273 8.6e-22 107.8 165 41.8
BcaB02g07547 Brassica carinata HOM05D004132 ORTHO05D006273 1.5e-21 107.1 165 40.6
BcaC07g40275 Brassica carinata HOM05D004132 ORTHO05D006273 1.5e-21 107.1 165 40.6
BcaC08g44901 Brassica carinata HOM05D004132 ORTHO05D006273 1.5e-21 107.1 165 40.6
A07p23930 Brassica napus HOM05D004132 ORTHO05D006273 1.5e-21 107.1 165 40.6
A09p50920 Brassica napus HOM05D004132 ORTHO05D006273 1.5e-21 107.1 165 40.6
C06p25160 Brassica napus HOM05D004132 ORTHO05D006273 1.5e-21 107.1 165 40.6
C08p33670 Brassica napus HOM05D004132 ORTHO05D006273 1.5e-21 107.1 165 40.6
BolC6t37674H Brassica oleracea HOM05D004132 ORTHO05D006273 1.5e-21 107.1 165 40.6
BraA07t30044Z Brassica rapa HOM05D004132 ORTHO05D006273 1.5e-21 107.1 165 40.6
BraA09t40538Z Brassica rapa HOM05D004132 ORTHO05D006273 1.5e-21 107.1 165 40.6
CDE05G2281 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 1.5e-21 107.1 165 40.0
CDE05G2803 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 1.9e-21 106.7 165 40.0
BcaC07g40186 Brassica carinata HOM05D004132 ORTHO05D006273 3.3e-21 105.9 165 40.0
TWI59G0283 Tripterygium wilfordii HOM05D004132 ORTHO05D006273 3.3e-21 105.9 165 40.6
SEGI_34381 Sequoiadendron giganteum HOM05D004132 ORTHO05D018522 4.3e-21 105.5 165 40.0
AagrBONN_evm.TU.Sc2ySwM_344.2605 Anthoceros agrestis HOM05D004132 ORTHO05D006273 5.6e-21 105.1 165 40.6
AL5G39830 Arabidopsis lyrata HOM05D004132 ORTHO05D006273 7.3e-21 104.8 165 39.4
BolC8t50964H Brassica oleracea HOM05D004132 ORTHO05D006273 1.2e-20 104.0 165 40.0
TPR.G28546 Trifolium pratense HOM05D004132 ORTHO05D006273 1.6e-20 103.6 152 43.4
Ah.04g159510 Amaranthus hybridus HOM05D004132 ORTHO05D006273 3.6e-20 102.4 165 39.4
AUR62010256 Chenopodium quinoa HOM05D004132 ORTHO05D006273 8.1e-20 101.3 152 42.8
AUR62013238 Chenopodium quinoa HOM05D004132 ORTHO05D006273 8.1e-20 101.3 152 42.8
HPP92_026254 Vanilla planifolia HOM05D004132 ORTHO05D006273 1.1e-19 100.9 165 41.2
Nitab4.5_0000582g0060 Nicotiana tabacum HOM05D004132 ORTHO05D006273 2.3e-19 99.8 152 42.1
Oeu056054.1 Olea europaea HOM05D004132 ORTHO05D006273 5.2e-19 98.6 152 41.4
Hund06337 Selenicereus undatus HOM05D004132 ORTHO05D006273 5.2e-19 98.6 157 40.8
Mapoly0072s0003 Marchantia polymorpha HOM05D004132 ORTHO05D006273 6.8e-19 98.2 164 40.9
AT3G58140 Arabidopsis thaliana HOM05D004132 ORTHO05D006273 8.9e-19 97.8 166 38.6
EL10Ac9g22320 Beta vulgaris HOM05D004132 ORTHO05D006273 8.9e-19 97.8 158 40.5
CBR_g19753 Chara braunii HOM05D004132 ORTHO05D006273 8.9e-19 97.8 169 37.9
Nitab4.5_0004719g0050 Nicotiana tabacum HOM05D004132 ORTHO05D006273 8.9e-19 97.8 151 41.7
Manes.12G056400 Manihot esculenta HOM05D004132 ORTHO05D006273 1.2e-18 97.4 152 40.1
SMO361G0681 Selaginella moellendorffii HOM05D004132 ORTHO05D006273 2.2e-17 93.2 165 35.8
TPR.G19642 Trifolium pratense HOM05D004132 ORTHO05D018522 9.2e-16 87.8 51 84.3
Cre02.g079600 Chlamydomonas reinhardtii HOM05D004132 ORTHO05D006273 9.6e-13 77.8 166 33.7
MCO13G295 Micromonas commoda HOM05D004132 ORTHO05D006273 9.6e-13 77.8 169 34.3
HanXRQChr16g0516741 Helianthus annuus HOM05D004132 ORTHO05D018522 8.1e-12 74.7 42 85.7
PRCOL_00002437 Prasinoderma coloniale HOM05D004132 ORTHO05D006273 2.9e-09 66.2 166 28.9
Dinv25394 Davidia involucrata HOM05D004132 ORTHO05D006273 1.1e-08 64.3 37 75.7
arahy.Tifrunner.gnm1.ann1.0UIU5S Arachis hypogaea HOM05D004132 ORTHO05D018522 3.2e-08 62.8 37 78.4
arahy.Tifrunner.gnm1.ann1.DI7635 Arachis hypogaea HOM05D004132 ORTHO05D006273 5.4e-08 62.0 36 80.6
arahy.Tifrunner.gnm1.ann1.S74BYY Arachis hypogaea HOM05D004132 ORTHO05D006273 7.8e-07 58.2 36 80.6
RcHm_v2.0_Chr3g0486391 Rosa chinensis HOM05D004132 ORTHO05D006273 8.7e-06 54.7 130 33.1


User provided reference genes

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