Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p095492 Quercus lobata HOM05D004132 ORTHO05D018840 2.2e-105 385.6 183 100.0
QL04p095526 Quercus lobata HOM05D004132 ORTHO05D006273 1.2e-58 230.3 187 65.8
Cfa000667 Carpinus fangiana HOM05D004132 ORTHO05D006273 5.4e-56 221.5 189 61.4
CiPaw.09G074000 Carya illinoinensis HOM05D004132 ORTHO05D006273 1.6e-55 219.9 189 61.4
TAR626G0350 Trochodendron aralioides HOM05D004132 ORTHO05D006273 1.7e-54 216.5 189 59.8
Potri.013G105200 Populus trichocarpa HOM05D004132 ORTHO05D006273 5.1e-54 214.9 191 60.2
Haze_06152 Corylus avellana HOM05D004132 ORTHO05D006273 6.6e-54 214.5 218 53.7
Cpa.g.sc84.15 Carica papaya HOM05D004132 ORTHO05D006273 8.6e-54 214.2 191 59.2
Sabra13G0090900 Salix brachista HOM05D004132 ORTHO05D006273 1.1e-53 213.8 191 59.7
MBI07_g09898_MAGBIO Magnolia biondii HOM05D004132 ORTHO05D006273 1.5e-53 213.4 199 57.8
MD10G1229100 Malus domestica HOM05D004132 ORTHO05D006273 1.9e-53 213.0 189 59.3
Prupe.4G115500 Prunus persica HOM05D004132 ORTHO05D006273 4.3e-53 211.8 189 58.7
Atru.chr3.3175 Acer truncatum HOM05D004132 ORTHO05D006273 5.6e-53 211.5 198 57.6
MD05G1248600 Malus domestica HOM05D004132 ORTHO05D006273 9.5e-53 210.7 189 58.7
Manes.12G056400 Manihot esculenta HOM05D004132 ORTHO05D006273 1.2e-52 210.3 199 56.3
Nn6g34644 Nelumbo nucifera HOM05D004132 ORTHO05D006273 1.2e-52 210.3 206 56.8
CANSAT78G2113 Cannabis sativa HOM05D004132 ORTHO05D006273 3.6e-52 208.8 189 57.1
RcHm_v2.0_Chr5g0020641 Rosa chinensis HOM05D004132 ORTHO05D006273 3.6e-52 208.8 189 57.7
GSVIVG01010923001 Vitis vinifera HOM05D004132 ORTHO05D006273 3.6e-52 208.8 195 57.9
CSS0017532 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D006273 4.7e-52 208.4 191 57.1
Sc08g0001660 Simmondsia chinensis HOM05D004132 ORTHO05D006273 4.7e-52 208.4 189 57.7
Dinv31163 Davidia involucrata HOM05D004132 ORTHO05D006273 6.2e-52 208.0 111 85.6
DCAR_001290 Daucus carota HOM05D004132 ORTHO05D006273 1.8e-51 206.5 190 56.8
PSO421G0604 Papaver somniferum HOM05D004132 ORTHO05D006273 2.4e-51 206.1 123 79.7
THA.LOC104826464 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 2.4e-51 206.1 191 55.0
Dinv25393 Davidia involucrata HOM05D004132 ORTHO05D006273 4.0e-51 205.3 204 53.4
FvH4_3g12680 Fragaria vesca HOM05D004132 ORTHO05D006273 4.0e-51 205.3 189 56.6
FAN16G0015 Fragaria x ananassa HOM05D004132 ORTHO05D006273 4.0e-51 205.3 204 54.4
RcHm_v2.0_Chr3g0486261 Rosa chinensis HOM05D004132 ORTHO05D006273 4.0e-51 205.3 110 84.5
Thecc.04G197300 Theobroma cacao HOM05D004132 ORTHO05D006273 4.0e-51 205.3 110 86.4
Gohir.A10G126900 Gossypium hirsutum HOM05D004132 ORTHO05D006273 5.2e-51 204.9 110 85.5
Gohir.D10G139300 Gossypium hirsutum HOM05D004132 ORTHO05D006273 5.2e-51 204.9 110 85.5
VMungo1383G0131 Vigna mungo HOM05D004132 ORTHO05D006273 6.8e-51 204.5 197 54.8
Hund06337 Selenicereus undatus HOM05D004132 ORTHO05D006273 8.9e-51 204.1 123 78.9
PSO063G4358 Papaver somniferum HOM05D004132 ORTHO05D006273 1.2e-50 203.8 123 78.9
THA.LOC104800472 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 1.5e-50 203.4 189 55.6
Eucgr.C02274 Eucalyptus grandis HOM05D004132 ORTHO05D006273 2.6e-50 202.6 189 57.7
PGSC0003DMG400023334 Solanum tuberosum HOM05D004132 ORTHO05D006273 2.6e-50 202.6 110 83.6
CAN.G1921.3 Capsicum annuum HOM05D004132 ORTHO05D006273 3.4e-50 202.2 110 83.6
Solyc05g056260.2 Solanum lycopersicum HOM05D004132 ORTHO05D006273 3.4e-50 202.2 110 82.7
GSVIVG01020335001 Vitis vinifera HOM05D004132 ORTHO05D006273 3.4e-50 202.2 192 56.2
Duzib151G0861 Durio zibethinus HOM05D004132 ORTHO05D006273 4.4e-50 201.8 110 85.5
FAN25G0118 Fragaria x ananassa HOM05D004132 ORTHO05D006273 4.4e-50 201.8 191 56.0
Gorai.011G155000 Gossypium raimondii HOM05D004132 ORTHO05D006273 4.4e-50 201.8 110 84.5
Nitab4.5_0004719g0050 Nicotiana tabacum HOM05D004132 ORTHO05D006273 4.4e-50 201.8 119 74.8
SGA_v2.0_scaffold298G47699 Striga asiatica HOM05D004132 ORTHO05D006273 4.4e-50 201.8 110 85.5
ClCG01G025610 Citrullus lanatus HOM05D004132 ORTHO05D006273 5.8e-50 201.4 110 84.5
Peaxi162Scf00858g00012 Petunia axillaris HOM05D004132 ORTHO05D006273 5.8e-50 201.4 124 75.0
Ah.04g159510 Amaranthus hybridus HOM05D004132 ORTHO05D006273 7.6e-50 201.1 110 82.7
Sopen05g034650 Solanum pennellii HOM05D004132 ORTHO05D006273 7.6e-50 201.1 110 82.7
Nitab4.5_0000582g0060 Nicotiana tabacum HOM05D004132 ORTHO05D006273 9.9e-50 200.7 110 82.7
TWI59G0283 Tripterygium wilfordii HOM05D004132 ORTHO05D006273 9.9e-50 200.7 190 58.9
EL10Ac9g22320 Beta vulgaris HOM05D004132 ORTHO05D006273 1.7e-49 199.9 120 78.3
Sed0002662 Sechium edule HOM05D004132 ORTHO05D006273 1.7e-49 199.9 110 83.6
Ah.06g194990 Amaranthus hybridus HOM05D004132 ORTHO05D006273 2.2e-49 199.5 110 81.8
AUR62013238 Chenopodium quinoa HOM05D004132 ORTHO05D006273 2.9e-49 199.1 110 81.8
HanXRQChr12g0367151 Helianthus annuus HOM05D004132 ORTHO05D006273 2.9e-49 199.1 123 77.2
Hma1.2p1_0325F.1_g126090 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 2.9e-49 199.1 110 83.6
Lj6g0002780 Lotus japonicus HOM05D004132 ORTHO05D006273 2.9e-49 199.1 204 52.9
Oeu056055.1 Olea europaea HOM05D004132 ORTHO05D006273 2.9e-49 199.1 126 74.6
Phvul.008G010100 Phaseolus vulgaris HOM05D004132 ORTHO05D006273 2.9e-49 199.1 197 53.3
Migut.D01293 Erythranthe guttata HOM05D004132 ORTHO05D006273 3.8e-49 198.7 121 78.5
TPR.G28546 Trifolium pratense HOM05D004132 ORTHO05D006273 4.9e-49 198.4 123 76.4
SGA_v2.0_scaffold175G39350 Striga asiatica HOM05D004132 ORTHO05D006273 6.4e-49 198.0 110 84.5
CsaV3_6G052840 Cucumis sativus L. HOM05D004132 ORTHO05D006273 8.4e-49 197.6 123 77.2
CDE05G2281 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 1.1e-48 197.2 203 52.7
Aqoxy2G02279 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 1.4e-48 196.8 144 67.4
COL.COLO4_20206 Corchorus olitorius HOM05D004132 ORTHO05D006273 1.4e-48 196.8 110 81.8
Cc09_g05560 Coffea canephora HOM05D004132 ORTHO05D006273 1.9e-48 196.4 110 81.8
unitig_37.g12049 Utricularia gibba HOM05D004132 ORTHO05D006273 1.9e-48 196.4 110 82.7
MSTRG.16365 Avicennia marina HOM05D004132 ORTHO05D006273 2.4e-48 196.1 110 81.8
Aqoxy7G00307 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 3.2e-48 195.7 144 66.7
MELO3C007024.2 Cucumis melo HOM05D004132 ORTHO05D006273 3.2e-48 195.7 123 76.4
ECA232G2283 Erigeron canadensis HOM05D004132 ORTHO05D006273 4.1e-48 195.3 120 75.8
Rhsim04G0004400 Rhododendron simsii HOM05D004132 ORTHO05D006273 4.1e-48 195.3 109 81.7
ATR0215G010 Amborella trichopoda HOM05D004132 ORTHO05D006273 7.1e-48 194.5 120 76.7
Lalb_Chr17g0336121 Lupinus albus HOM05D004132 ORTHO05D006273 9.2e-48 194.1 189 54.5
SalBow7G0375 Salvia bowleyana HOM05D004132 ORTHO05D006273 9.2e-48 194.1 110 80.9
Hund00133 Selenicereus undatus HOM05D004132 ORTHO05D006273 9.2e-48 194.1 110 81.8
GSVIVG01020347001 Vitis vinifera HOM05D004132 ORTHO05D006273 9.2e-48 194.1 129 72.1
CDE05G2803 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 1.2e-47 193.7 110 81.8
Ca_06096_v3 Cicer arietinum L. HOM05D004132 ORTHO05D006273 1.2e-47 193.7 110 80.9
Lj5g0016492 Lotus japonicus HOM05D004132 ORTHO05D006273 1.2e-47 193.7 123 74.0
Glyma.18G291800 Glycine max HOM05D004132 ORTHO05D006273 1.6e-47 193.4 189 55.0
Medtr7g083030 Medicago truncatula HOM05D004132 ORTHO05D006273 1.6e-47 193.4 110 81.8
Psat3g096280 Pisum sativum HOM05D004132 ORTHO05D006273 1.6e-47 193.4 123 74.8
PGR102G2051 Punica granatum HOM05D004132 ORTHO05D006273 3.5e-47 192.2 110 80.9
Aa31LG10G12860 Aethionema arabicum HOM05D004132 ORTHO05D006273 4.6e-47 191.8 190 52.1
CSS0033836 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D018840 4.6e-47 191.8 123 73.2
Glyma.02G091300 Glycine max HOM05D004132 ORTHO05D006273 4.6e-47 191.8 189 54.5
Os12g0533700 Oryza sativa ssp. japonica HOM05D004132 ORTHO05D006273 4.6e-47 191.8 110 79.1
Lsat_1_v5_gn_8_118000 Lactuca sativa HOM05D004132 ORTHO05D006273 6.0e-47 191.4 120 75.0
arahy.Tifrunner.gnm1.ann1.KJS3LB Arachis hypogaea HOM05D004132 ORTHO05D006273 7.8e-47 191.0 110 79.1
arahy.Tifrunner.gnm1.ann1.L32XPY Arachis hypogaea HOM05D004132 ORTHO05D006273 7.8e-47 191.0 110 79.1
AT3G58140 Arabidopsis thaliana HOM05D004132 ORTHO05D006273 1.0e-46 190.7 110 80.0
Carub.0005s2499 Capsella rubella HOM05D004132 ORTHO05D006273 1.0e-46 190.7 110 80.0
HPP92_026254 Vanilla planifolia HOM05D004132 ORTHO05D006273 1.0e-46 190.7 110 80.0
AL5G39830 Arabidopsis lyrata HOM05D004132 ORTHO05D006273 1.3e-46 190.3 110 80.0
Thhalv10005992m.g Eutrema salsugineum HOM05D004132 ORTHO05D006273 3.0e-46 189.1 110 79.1
A07p23930 Brassica napus HOM05D004132 ORTHO05D006273 3.9e-46 188.7 110 80.0
BolC8t50964H Brassica oleracea HOM05D004132 ORTHO05D006273 3.9e-46 188.7 110 80.0
BraA07t30044Z Brassica rapa HOM05D004132 ORTHO05D006273 3.9e-46 188.7 110 80.0
Eucgr.C02393 Eucalyptus grandis HOM05D004132 ORTHO05D006273 5.1e-46 188.3 183 55.7
BcaB02g07547 Brassica carinata HOM05D004132 ORTHO05D006273 6.6e-46 188.0 110 80.0
BcaC07g40275 Brassica carinata HOM05D004132 ORTHO05D006273 6.6e-46 188.0 111 79.3
BcaC08g44901 Brassica carinata HOM05D004132 ORTHO05D006273 6.6e-46 188.0 110 80.0
A09p50920 Brassica napus HOM05D004132 ORTHO05D006273 6.6e-46 188.0 110 80.0
C06p25160 Brassica napus HOM05D004132 ORTHO05D006273 6.6e-46 188.0 110 80.0
BolC6t37674H Brassica oleracea HOM05D004132 ORTHO05D006273 6.6e-46 188.0 110 80.0
BraA09t40538Z Brassica rapa HOM05D004132 ORTHO05D006273 6.6e-46 188.0 110 80.0
Zm00001eb153980 Zea mays HOM05D004132 ORTHO05D006273 6.6e-46 188.0 110 78.2
C08p33670 Brassica napus HOM05D004132 ORTHO05D006273 8.7e-46 187.6 110 80.0
Ciclev10011787m.g Citrus clementina HOM05D004132 ORTHO05D006273 1.1e-45 187.2 110 78.2
Oeu050047.1 Olea europaea HOM05D004132 ORTHO05D018840 1.5e-45 186.8 110 79.1
Zm00001eb371320 Zea mays HOM05D004132 ORTHO05D006273 1.5e-45 186.8 110 77.3
SEGI_05248 Sequoiadendron giganteum HOM05D004132 ORTHO05D006273 1.9e-45 186.4 110 80.9
Sp5g04580 Schrenkiella parvula HOM05D004132 ORTHO05D006273 3.3e-45 185.7 110 79.1
BcaC07g40186 Brassica carinata HOM05D004132 ORTHO05D006273 5.6e-45 184.9 110 79.1
CARHR168500 Cardamine hirsuta HOM05D004132 ORTHO05D006273 7.3e-45 184.5 110 77.3
Oeu056054.1 Olea europaea HOM05D004132 ORTHO05D006273 7.3e-45 184.5 108 78.7
Lj1g0015918 Lotus japonicus HOM05D004132 ORTHO05D006273 1.6e-44 183.3 104 79.8
Pp3c5_15740 Physcomitrium patens HOM05D004132 ORTHO05D006273 2.8e-44 182.6 111 75.7
Hma1.2p1_0634F.1_g192870 Hydrangea macrophylla HOM05D004132 ORTHO05D018840 1.1e-43 180.6 110 77.3
CBR_g19753 Chara braunii HOM05D004132 ORTHO05D006273 2.4e-43 179.5 110 74.5
Sed0008608 Sechium edule HOM05D004132 ORTHO05D006273 4.0e-43 178.7 140 62.1
Mapoly0072s0003 Marchantia polymorpha HOM05D004132 ORTHO05D006273 6.9e-43 177.9 120 70.0
Rhsim08G0147200 Rhododendron simsii HOM05D004132 ORTHO05D018840 1.2e-42 177.2 121 66.1
AagrBONN_evm.TU.Sc2ySwM_344.2605 Anthoceros agrestis HOM05D004132 ORTHO05D006273 2.0e-42 176.4 110 71.8
Rhsim01G0214100 Rhododendron simsii HOM05D004132 ORTHO05D018840 7.6e-42 174.5 105 73.3
SMO361G0681 Selaginella moellendorffii HOM05D004132 ORTHO05D006273 4.9e-41 171.8 110 69.1
Cre02.g079600 Chlamydomonas reinhardtii HOM05D004132 ORTHO05D006273 4.2e-40 168.7 110 71.8
PRCOL_00002437 Prasinoderma coloniale HOM05D004132 ORTHO05D006273 4.6e-39 165.2 111 66.7
MCO13G295 Micromonas commoda HOM05D004132 ORTHO05D006273 1.6e-36 156.8 129 58.1
AUR62010256 Chenopodium quinoa HOM05D004132 ORTHO05D006273 5.8e-34 148.3 110 66.4
FAN21G3660 Fragaria x ananassa HOM05D004132 ORTHO05D035098 1.3e-33 147.1 155 50.3
GSVIVG01020319001 Vitis vinifera HOM05D004132 ORTHO05D035098 3.2e-32 142.5 150 52.0
GSVIVG01020339001 Vitis vinifera HOM05D004132 ORTHO05D006273 5.1e-30 135.2 149 49.7
Rhsim02G0198900 Rhododendron simsii HOM05D004132 ORTHO05D018840 4.0e-27 125.6 121 55.4
ECA233G2583 Erigeron canadensis HOM05D004132 ORTHO05D006273 5.3e-27 125.2 106 59.4
Rhsim06G0102600 Rhododendron simsii HOM05D004132 ORTHO05D018840 4.6e-23 112.1 69 72.5
Dinv25394 Davidia involucrata HOM05D004132 ORTHO05D006273 3.4e-18 95.9 49 87.8
Haze_26151 Corylus avellana HOM05D004132 ORTHO05D006273 3.8e-17 92.4 82 48.8
Cfa022583 Carpinus fangiana HOM05D004132 ORTHO05D006273 1.9e-16 90.1 83 47.0
GSVIVG01012128001 Vitis vinifera HOM05D004132 ORTHO05D006273 3.3e-13 79.3 105 47.6
Hma1.2p1_0666F.1_g199485 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 2.2e-12 76.6 43 74.4
HanXRQChr09g0260411 Helianthus annuus HOM05D004132 ORTHO05D006273 7.9e-07 58.2 35 74.3
BolC6t37679H Brassica oleracea HOM05D004132 ORTHO05D006273 5.1e-06 55.5 30 80.0


User provided reference genes

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