Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p090594 Quercus lobata HOM05D000840 ORTHO05D000670 5.6e-37 157.1 82 100.0
QL04p090235 Quercus lobata HOM05D000840 ORTHO05D000670 4.2e-32 141.0 81 92.6
QL04p021887 Quercus lobata HOM05D000840 ORTHO05D000670 9.3e-16 86.7 72 70.8
Haze_02967 Corylus avellana HOM05D000840 ORTHO05D000670 2.1e-15 85.5 72 68.1
TAR633G2034 Trochodendron aralioides HOM05D000840 ORTHO05D000670 2.7e-15 85.1 72 65.3
Haze_16613 Corylus avellana HOM05D000840 ORTHO05D000670 7.9e-15 83.6 72 65.3
QL05p033046 Quercus lobata HOM05D000840 ORTHO05D000670 1.3e-14 82.8 72 63.9
Ciclev10024717m.g Citrus clementina HOM05D000840 ORTHO05D000670 1.8e-14 82.4 72 62.5
Dinv31992 Davidia involucrata HOM05D000840 ORTHO05D000670 1.8e-14 82.4 71 67.6
CiPaw.01G251200 Carya illinoinensis HOM05D000840 ORTHO05D000670 2.3e-14 82.0 72 63.9
Manes.11G061900 Manihot esculenta HOM05D000840 ORTHO05D000670 3.9e-14 81.3 72 61.1
Dinv31533 Davidia involucrata HOM05D000840 ORTHO05D000670 5.1e-14 80.9 72 66.7
Duzib235G0104 Durio zibethinus HOM05D000840 ORTHO05D000670 6.7e-14 80.5 72 62.5
Gohir.A10G072300 Gossypium hirsutum HOM05D000840 ORTHO05D000670 8.7e-14 80.1 72 62.5
Gohir.D10G078800 Gossypium hirsutum HOM05D000840 ORTHO05D000670 8.7e-14 80.1 72 62.5
Gorai.011G085600 Gossypium raimondii HOM05D000840 ORTHO05D000670 8.7e-14 80.1 72 62.5
Lj3g0027916 Lotus japonicus HOM05D000840 ORTHO05D000670 8.7e-14 80.1 72 61.1
COL.COLO4_11847 Corchorus olitorius HOM05D000840 ORTHO05D000670 1.5e-13 79.3 72 62.5
Nn2g14599 Nelumbo nucifera HOM05D000840 ORTHO05D000670 1.5e-13 79.3 72 61.1
Manes.04G107400 Manihot esculenta HOM05D000840 ORTHO05D000670 1.9e-13 79.0 72 61.1
Thecc.06G034100 Theobroma cacao HOM05D000840 ORTHO05D000670 2.5e-13 78.6 72 61.1
TWI75G0929 Tripterygium wilfordii HOM05D000840 ORTHO05D000670 2.5e-13 78.6 72 61.1
Gohir.A05G121700 Gossypium hirsutum HOM05D000840 ORTHO05D000670 3.3e-13 78.2 72 59.7
Gohir.D05G122700 Gossypium hirsutum HOM05D000840 ORTHO05D000670 3.3e-13 78.2 72 59.7
Sabra11G0064900 Salix brachista HOM05D000840 ORTHO05D000670 3.3e-13 78.2 71 62.0
arahy.Tifrunner.gnm1.ann1.8F3D8E Arachis hypogaea HOM05D000840 ORTHO05D000670 7.4e-13 77.0 72 58.3
arahy.Tifrunner.gnm1.ann1.E5CV98 Arachis hypogaea HOM05D000840 ORTHO05D000670 7.4e-13 77.0 72 58.3
MSTRG.20450 Avicennia marina HOM05D000840 ORTHO05D000670 7.4e-13 77.0 72 61.1
Gorai.009G126200 Gossypium raimondii HOM05D000840 ORTHO05D000670 7.4e-13 77.0 72 58.3
Potri.003G012400 Populus trichocarpa HOM05D000840 ORTHO05D000670 7.4e-13 77.0 72 61.1
RcHm_v2.0_Chr5g0075871 Rosa chinensis HOM05D000840 ORTHO05D000670 7.4e-13 77.0 72 62.5
Cc00_g11640 Coffea canephora HOM05D000840 ORTHO05D000670 9.6e-13 76.6 71 62.0
Migut.B01095 Erythranthe guttata HOM05D000840 ORTHO05D000670 1.3e-12 76.3 72 59.7
Glyma.13G367700 Glycine max HOM05D000840 ORTHO05D000670 1.3e-12 76.3 72 58.3
PSO339G3445 Papaver somniferum HOM05D000840 ORTHO05D000670 1.3e-12 76.3 72 59.7
PSO384G2259 Papaver somniferum HOM05D000840 ORTHO05D000670 1.3e-12 76.3 72 59.7
Cfa001928 Carpinus fangiana HOM05D000840 ORTHO05D000670 1.6e-12 75.9 72 61.1
Duzib160G0548 Durio zibethinus HOM05D000840 ORTHO05D000670 1.6e-12 75.9 72 58.3
Sabra03G0016100 Salix brachista HOM05D000840 ORTHO05D000670 1.6e-12 75.9 72 59.7
GSVIVG01027202001 Vitis vinifera HOM05D000840 ORTHO05D000670 1.6e-12 75.9 73 61.6
Eucgr.J00090 Eucalyptus grandis HOM05D000840 ORTHO05D000670 2.1e-12 75.5 72 56.9
Nitab4.5_0004105g0020 Nicotiana tabacum HOM05D000840 ORTHO05D000670 2.8e-12 75.1 72 58.3
Prupe.6G027500 Prunus persica HOM05D000840 ORTHO05D000670 2.8e-12 75.1 72 61.1
vmacro12684 Vaccinium macrocarpon HOM05D000840 ORTHO05D000670 2.8e-12 75.1 73 60.3
Atru.chr4.1644_Atru.chr4.1657 Acer truncatum HOM05D000840 ORTHO05D000670 3.7e-12 74.7 74 59.5
Ca_01040_v3 Cicer arietinum L. HOM05D000840 ORTHO05D000670 3.7e-12 74.7 71 59.2
Glyma.15G005500 Glycine max HOM05D000840 ORTHO05D000670 3.7e-12 74.7 72 56.9
MD11G1036600 Malus domestica HOM05D000840 ORTHO05D000670 3.7e-12 74.7 72 59.7
Phvul.005G180200 Phaseolus vulgaris HOM05D000840 ORTHO05D000670 3.7e-12 74.7 72 56.9
VMungo1080G0802 Vigna mungo HOM05D000840 ORTHO05D000670 3.7e-12 74.7 72 56.9
FvH4_3g42370 Fragaria vesca HOM05D000840 ORTHO05D000670 4.8e-12 74.3 72 61.1
FAN11G2882 Fragaria x ananassa HOM05D000840 ORTHO05D000670 4.8e-12 74.3 72 61.1
FAN16G1995 Fragaria x ananassa HOM05D000840 ORTHO05D000670 4.8e-12 74.3 72 61.1
FAN21G2894 Fragaria x ananassa HOM05D000840 ORTHO05D000670 4.8e-12 74.3 72 61.1
FAN28G2945 Fragaria x ananassa HOM05D000840 ORTHO05D000670 4.8e-12 74.3 72 61.1
SalBow8G1535 Salvia bowleyana HOM05D000840 ORTHO05D000670 4.8e-12 74.3 72 58.3
SGA_v2.0_scaffold172G38982 Striga asiatica HOM05D000840 ORTHO05D000670 4.8e-12 74.3 72 61.1
CSS0003676 Camellia sinensis var. sinensis HOM05D000840 ORTHO05D000670 6.2e-12 73.9 75 58.7
FAN25G1451 Fragaria x ananassa HOM05D000840 ORTHO05D000670 6.2e-12 73.9 71 62.0
PGR044G1495 Punica granatum HOM05D000840 ORTHO05D000670 6.2e-12 73.9 71 57.7
TPR.G37212 Trifolium pratense HOM05D000840 ORTHO05D000670 6.2e-12 73.9 72 56.9
Nn7g37000 Nelumbo nucifera HOM05D000840 ORTHO05D000670 8.2e-12 73.6 72 59.7
Lalb_Chr01g0012231 Lupinus albus HOM05D000840 ORTHO05D000670 1.1e-11 73.2 72 61.1
MD03G1032700 Malus domestica HOM05D000840 ORTHO05D000670 1.1e-11 73.2 72 59.7
GSVIVG01022350001 Vitis vinifera HOM05D000840 ORTHO05D000670 1.1e-11 73.2 72 58.3
Aqoxy1G00094 Aquilegia oxysepala HOM05D000840 ORTHO05D000670 1.4e-11 72.8 75 53.3
EL10Ac2g02702 Beta vulgaris HOM05D000840 ORTHO05D000670 1.4e-11 72.8 71 56.3
DCAR_003830 Daucus carota HOM05D000840 ORTHO05D000670 1.4e-11 72.8 73 61.6
TWI12G0605 Tripterygium wilfordii HOM05D000840 ORTHO05D000670 1.4e-11 72.8 72 59.7
CANSAT56G1456 Cannabis sativa HOM05D000840 ORTHO05D000670 1.8e-11 72.4 72 55.6
CiPaw.02G159300 Carya illinoinensis HOM05D000840 ORTHO05D000670 1.8e-11 72.4 72 61.1
Actinidia01692 Actinidia chinensis HOM05D000840 ORTHO05D000670 2.4e-11 72.0 72 58.3
ECA240G2103 Erigeron canadensis HOM05D000840 ORTHO05D000670 2.4e-11 72.0 72 54.2
Oeu012484.1 Olea europaea HOM05D000840 ORTHO05D000670 2.4e-11 72.0 72 58.3
HanXRQChr03g0080491 Helianthus annuus HOM05D000840 ORTHO05D000670 3.1e-11 71.6 71 56.3
Cc00_g09670 Coffea canephora HOM05D000840 ORTHO05D000670 5.3e-11 70.9 71 62.0
Hund15769 Selenicereus undatus HOM05D000840 ORTHO05D000670 5.3e-11 70.9 72 52.8
Lsat_1_v5_gn_5_51740 Lactuca sativa HOM05D000840 ORTHO05D000670 6.9e-11 70.5 72 54.2
Psat5g304200 Pisum sativum HOM05D000840 ORTHO05D000670 6.9e-11 70.5 72 54.2
Nitab4.5_0004104g0090 Nicotiana tabacum HOM05D000840 ORTHO05D000670 9.0e-11 70.1 72 54.2
Cpa.g.sc14.206 Carica papaya HOM05D000840 ORTHO05D000670 1.2e-10 69.7 66 59.1
ClCG09G013490 Citrullus lanatus HOM05D000840 ORTHO05D000670 1.2e-10 69.7 72 56.9
CsaV3_7G006140 Cucumis sativus L. HOM05D000840 ORTHO05D000670 1.2e-10 69.7 72 55.6
DCAR_007818 Daucus carota HOM05D000840 ORTHO05D000670 1.2e-10 69.7 72 54.2
Oeu027053.1 Olea europaea HOM05D000840 ORTHO05D000670 1.2e-10 69.7 72 56.9
Peaxi162Scf00195g00830 Petunia axillaris HOM05D000840 ORTHO05D000670 1.2e-10 69.7 72 55.6
Medtr2g104400 Medicago truncatula HOM05D000840 ORTHO05D000670 1.5e-10 69.3 71 56.3
Nitab4.5_0010235g0010 Nicotiana tabacum HOM05D000840 ORTHO05D000670 2.0e-10 68.9 71 56.3
Sed0011014 Sechium edule HOM05D000840 ORTHO05D000670 2.0e-10 68.9 72 55.6
Actinidia01522 Actinidia chinensis HOM05D000840 ORTHO05D000670 3.4e-10 68.2 73 54.8
HanXRQChr13g0410001 Helianthus annuus HOM05D000840 ORTHO05D000670 3.4e-10 68.2 72 50.0
Rhsim01G0143500 Rhododendron simsii HOM05D000840 ORTHO05D000670 3.4e-10 68.2 72 59.7
Potri.001G204900 Populus trichocarpa HOM05D000840 ORTHO05D000670 5.8e-10 67.4 72 54.2
Sc14g0004830 Simmondsia chinensis HOM05D000840 ORTHO05D000670 5.8e-10 67.4 70 52.9
Solyc04g009500.4 Solanum lycopersicum HOM05D000840 ORTHO05D000670 5.8e-10 67.4 67 58.2
Sopen04g004660 Solanum pennellii HOM05D000840 ORTHO05D000670 5.8e-10 67.4 67 58.2
CAN.G186.26 Capsicum annuum HOM05D000840 ORTHO05D000670 1.0e-09 66.6 72 51.4
CiPaw.13G017400 Carya illinoinensis HOM05D000840 ORTHO05D000670 1.0e-09 66.6 70 58.6
Ah.10g029750 Amaranthus hybridus HOM05D000840 ORTHO05D000670 1.7e-09 65.9 68 50.0
CANSAT56G3623 Cannabis sativa HOM05D000840 ORTHO05D000670 2.2e-09 65.5 72 55.6
Lalb_Chr24g0395381 Lupinus albus HOM05D000840 ORTHO05D000670 2.2e-09 65.5 72 54.2
vmacro21082 Vaccinium macrocarpon HOM05D000840 ORTHO05D000670 2.2e-09 65.5 72 56.9
MD07G1041400 Malus domestica HOM05D000840 ORTHO05D000670 3.8e-09 64.7 68 52.9
MBI04_g25415_MAGBIO Magnolia biondii HOM05D000840 ORTHO05D000670 5.0e-09 64.3 72 54.2
ClCG09G013510 Citrullus lanatus HOM05D000840 ORTHO05D000670 8.4e-09 63.5 73 54.8
Psat7g257920 Pisum sativum HOM05D000840 ORTHO05D000670 8.4e-09 63.5 68 57.4
THA.LOC104808194 Tarenaya hassleriana HOM05D000840 ORTHO05D000670 8.4e-09 63.5 71 52.1
MD02G1272500 Malus domestica HOM05D000840 ORTHO05D000670 1.1e-08 63.2 72 48.6
Prupe.2G048200 Prunus persica HOM05D000840 ORTHO05D000670 1.9e-08 62.4 68 51.5
Cpa.g.sc10.131 Carica papaya HOM05D000840 ORTHO05D000670 2.5e-08 62.0 72 52.8
Lj7C492G1 Lonicera japonica HOM05D000840 ORTHO05D000670 5.5e-08 60.8 57 63.2
VMungo0331G0091 Vigna mungo HOM05D000840 ORTHO05D000670 7.1e-08 60.5 72 50.0
Lj3g0017183 Lotus japonicus HOM05D000840 ORTHO05D000670 9.3e-08 60.1 72 48.6
PSO210G0831 Papaver somniferum HOM05D000840 ORTHO05D000670 9.3e-08 60.1 71 53.5
MD03G1032600 Malus domestica HOM05D000840 ORTHO05D000670 1.2e-07 59.7 71 53.5
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 1.6e-07 59.3 68 52.9
Medtr4g009740 Medicago truncatula HOM05D000840 ORTHO05D000670 2.1e-07 58.9 68 54.4
MBI12_g07473_MAGBIO Magnolia biondii HOM05D000840 ORTHO05D000670 2.7e-07 58.5 72 51.4
vmacro21084 Vaccinium macrocarpon HOM05D000840 ORTHO05D000670 2.7e-07 58.5 72 51.4
Phvul.010G157900 Phaseolus vulgaris HOM05D000840 ORTHO05D000670 3.5e-07 58.2 72 50.0
Ca_20456_v3 Cicer arietinum L. HOM05D000840 ORTHO05D000670 4.6e-07 57.8 68 51.5
Hund13419 Selenicereus undatus HOM05D000840 ORTHO05D000670 4.6e-07 57.8 72 44.4
PSO210G4621 Papaver somniferum HOM05D000840 ORTHO05D000670 6.1e-07 57.4 71 52.1
unitig_46.g18379 Utricularia gibba HOM05D000840 ORTHO05D000670 7.9e-07 57.0 68 54.4
unitig_48.g30294 Utricularia gibba HOM05D000840 ORTHO05D000670 7.9e-07 57.0 68 54.4
ClCG11G012980 Citrullus lanatus HOM05D000840 ORTHO05D000670 1.0e-06 56.6 62 51.6
Eucgr.G03197 Eucalyptus grandis HOM05D000840 ORTHO05D000670 1.0e-06 56.6 71 47.9
TPR.G38700 Trifolium pratense HOM05D000840 ORTHO05D000670 1.3e-06 56.2 67 52.2
Peaxi162Scf00583g00536 Petunia axillaris HOM05D000840 ORTHO05D000670 1.8e-06 55.8 72 47.2
Prupe.6G027400 Prunus persica HOM05D000840 ORTHO05D000670 2.3e-06 55.5 69 49.3
arahy.Tifrunner.gnm1.ann1.PEC4AR Arachis hypogaea HOM05D000840 ORTHO05D000670 3.0e-06 55.1 68 50.0
RcHm_v2.0_Chr4g0390581 Rosa chinensis HOM05D000840 ORTHO05D000670 3.0e-06 55.1 57 50.9
BraA09t41494Z Brassica rapa HOM05D000840 ORTHO05D000670 3.9e-06 54.7 71 46.5
HanXRQChr05g0129761 Helianthus annuus HOM05D000840 ORTHO05D000670 3.9e-06 54.7 72 47.2
Lalb_Chr04g0262271 Lupinus albus HOM05D000840 ORTHO05D000670 5.1e-06 54.3 71 47.9
CDE04G1049 Ceratophyllum demersum HOM05D000840 ORTHO05D000670 6.7e-06 53.9 71 49.3


User provided reference genes

Program Settings