Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p090235 Quercus lobata HOM05D000840 ORTHO05D000670 1.4e-69 266.2 136 100.0
QL04p090594 Quercus lobata HOM05D000840 ORTHO05D000670 2.0e-31 139.4 81 92.6
QL04p021887 Quercus lobata HOM05D000840 ORTHO05D000670 4.8e-17 91.7 96 59.4
Haze_02967 Corylus avellana HOM05D000840 ORTHO05D000670 6.3e-17 91.3 86 62.8
Duzib235G0104 Durio zibethinus HOM05D000840 ORTHO05D000670 2.0e-15 86.3 95 57.9
TAR633G2034 Trochodendron aralioides HOM05D000840 ORTHO05D000670 2.6e-15 85.9 96 52.1
Haze_16613 Corylus avellana HOM05D000840 ORTHO05D000670 4.5e-15 85.1 71 66.2
Gohir.A10G072300 Gossypium hirsutum HOM05D000840 ORTHO05D000670 5.9e-15 84.7 95 57.9
Gohir.D10G078800 Gossypium hirsutum HOM05D000840 ORTHO05D000670 5.9e-15 84.7 95 57.9
Gorai.011G085600 Gossypium raimondii HOM05D000840 ORTHO05D000670 5.9e-15 84.7 95 57.9
CiPaw.01G251200 Carya illinoinensis HOM05D000840 ORTHO05D000670 7.7e-15 84.3 129 47.3
Dinv31992 Davidia involucrata HOM05D000840 ORTHO05D000670 1.0e-14 84.0 70 68.6
Lj3g0027916 Lotus japonicus HOM05D000840 ORTHO05D000670 1.3e-14 83.6 86 57.0
Manes.04G107400 Manihot esculenta HOM05D000840 ORTHO05D000670 1.3e-14 83.6 104 51.9
Manes.11G061900 Manihot esculenta HOM05D000840 ORTHO05D000670 1.3e-14 83.6 104 50.0
QL05p033046 Quercus lobata HOM05D000840 ORTHO05D000670 1.3e-14 83.6 95 55.8
Ciclev10024717m.g Citrus clementina HOM05D000840 ORTHO05D000670 1.7e-14 83.2 95 54.7
Thecc.06G034100 Theobroma cacao HOM05D000840 ORTHO05D000670 1.7e-14 83.2 95 56.8
COL.COLO4_11847 Corchorus olitorius HOM05D000840 ORTHO05D000670 2.2e-14 82.8 95 56.8
Dinv31533 Davidia involucrata HOM05D000840 ORTHO05D000670 2.2e-14 82.8 72 66.7
Nn2g14599 Nelumbo nucifera HOM05D000840 ORTHO05D000670 5.0e-14 81.6 95 54.7
Sabra11G0064900 Salix brachista HOM05D000840 ORTHO05D000670 5.0e-14 81.6 71 63.4
Potri.003G012400 Populus trichocarpa HOM05D000840 ORTHO05D000670 6.5e-14 81.3 129 45.7
Duzib160G0548 Durio zibethinus HOM05D000840 ORTHO05D000670 8.5e-14 80.9 71 62.0
Sabra03G0016100 Salix brachista HOM05D000840 ORTHO05D000670 1.1e-13 80.5 131 44.3
PSO339G3445 Papaver somniferum HOM05D000840 ORTHO05D000670 1.4e-13 80.1 129 44.2
PSO384G2259 Papaver somniferum HOM05D000840 ORTHO05D000670 1.4e-13 80.1 129 44.2
RcHm_v2.0_Chr5g0075871 Rosa chinensis HOM05D000840 ORTHO05D000670 1.4e-13 80.1 71 64.8
TWI75G0929 Tripterygium wilfordii HOM05D000840 ORTHO05D000670 1.4e-13 80.1 71 62.0
Gohir.D05G122700 Gossypium hirsutum HOM05D000840 ORTHO05D000670 1.9e-13 79.7 129 45.7
arahy.Tifrunner.gnm1.ann1.8F3D8E Arachis hypogaea HOM05D000840 ORTHO05D000670 2.5e-13 79.3 86 53.5
arahy.Tifrunner.gnm1.ann1.E5CV98 Arachis hypogaea HOM05D000840 ORTHO05D000670 2.5e-13 79.3 86 53.5
Gohir.A05G121700 Gossypium hirsutum HOM05D000840 ORTHO05D000670 2.5e-13 79.3 129 45.7
SalBow8G1535 Salvia bowleyana HOM05D000840 ORTHO05D000670 2.5e-13 79.3 71 62.0
Migut.B01095 Erythranthe guttata HOM05D000840 ORTHO05D000670 3.2e-13 79.0 71 62.0
PGR044G1495 Punica granatum HOM05D000840 ORTHO05D000670 3.2e-13 79.0 89 51.7
vmacro12684 Vaccinium macrocarpon HOM05D000840 ORTHO05D000670 3.2e-13 79.0 72 63.9
MSTRG.20450 Avicennia marina HOM05D000840 ORTHO05D000670 4.2e-13 78.6 71 62.0
Cc00_g11640 Coffea canephora HOM05D000840 ORTHO05D000670 4.2e-13 78.6 71 62.0
Cfa001928 Carpinus fangiana HOM05D000840 ORTHO05D000670 5.5e-13 78.2 95 54.7
Eucgr.J00090 Eucalyptus grandis HOM05D000840 ORTHO05D000670 5.5e-13 78.2 96 47.9
Gorai.009G126200 Gossypium raimondii HOM05D000840 ORTHO05D000670 5.5e-13 78.2 129 45.0
GSVIVG01027202001 Vitis vinifera HOM05D000840 ORTHO05D000670 5.5e-13 78.2 87 55.2
Atru.chr4.1644_Atru.chr4.1657 Acer truncatum HOM05D000840 ORTHO05D000670 7.2e-13 77.8 73 61.6
DCAR_003830 Daucus carota HOM05D000840 ORTHO05D000670 7.2e-13 77.8 86 58.1
Glyma.13G367700 Glycine max HOM05D000840 ORTHO05D000670 7.2e-13 77.8 71 59.2
MD11G1036600 Malus domestica HOM05D000840 ORTHO05D000670 7.2e-13 77.8 71 62.0
Nitab4.5_0010235g0010 Nicotiana tabacum HOM05D000840 ORTHO05D000670 7.2e-13 77.8 89 53.9
Prupe.6G027500 Prunus persica HOM05D000840 ORTHO05D000670 7.2e-13 77.8 95 54.7
CANSAT56G1456 Cannabis sativa HOM05D000840 ORTHO05D000670 9.4e-13 77.4 71 59.2
FAN21G2894 Fragaria x ananassa HOM05D000840 ORTHO05D000670 9.4e-13 77.4 71 63.4
Nn7g37000 Nelumbo nucifera HOM05D000840 ORTHO05D000670 1.2e-12 77.0 130 44.6
Ca_01040_v3 Cicer arietinum L. HOM05D000840 ORTHO05D000670 1.6e-12 76.6 71 59.2
FvH4_3g42370 Fragaria vesca HOM05D000840 ORTHO05D000670 1.6e-12 76.6 95 54.7
FAN11G2882 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.6e-12 76.6 95 54.7
FAN16G1995 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.6e-12 76.6 95 54.7
FAN25G1451 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.6e-12 76.6 95 54.7
FAN28G2945 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.6e-12 76.6 95 54.7
Oeu012484.1 Olea europaea HOM05D000840 ORTHO05D000670 1.6e-12 76.6 104 50.0
Glyma.15G005500 Glycine max HOM05D000840 ORTHO05D000670 2.1e-12 76.3 71 57.7
MD03G1032700 Malus domestica HOM05D000840 ORTHO05D000670 2.1e-12 76.3 71 62.0
TWI12G0605 Tripterygium wilfordii HOM05D000840 ORTHO05D000670 2.7e-12 75.9 71 62.0
Actinidia01692 Actinidia chinensis HOM05D000840 ORTHO05D000670 3.6e-12 75.5 72 59.7
TPR.G37212 Trifolium pratense HOM05D000840 ORTHO05D000670 3.6e-12 75.5 71 57.7
EL10Ac2g02702 Beta vulgaris HOM05D000840 ORTHO05D000670 4.7e-12 75.1 96 45.8
ECA240G2103 Erigeron canadensis HOM05D000840 ORTHO05D000670 4.7e-12 75.1 95 49.5
HanXRQChr03g0080491 Helianthus annuus HOM05D000840 ORTHO05D000670 4.7e-12 75.1 95 50.5
CSS0003676 Camellia sinensis var. sinensis HOM05D000840 ORTHO05D000670 6.1e-12 74.7 132 42.4
Cpa.g.sc14.206 Carica papaya HOM05D000840 ORTHO05D000670 6.1e-12 74.7 66 62.1
Nitab4.5_0004105g0020 Nicotiana tabacum HOM05D000840 ORTHO05D000670 6.1e-12 74.7 126 42.9
VMungo1080G0802 Vigna mungo HOM05D000840 ORTHO05D000670 6.1e-12 74.7 122 41.0
Aqoxy1G00094 Aquilegia oxysepala HOM05D000840 ORTHO05D000670 7.9e-12 74.3 74 54.1
CiPaw.02G159300 Carya illinoinensis HOM05D000840 ORTHO05D000670 7.9e-12 74.3 84 57.1
HanXRQChr13g0410001 Helianthus annuus HOM05D000840 ORTHO05D000670 7.9e-12 74.3 96 44.8
Phvul.005G180200 Phaseolus vulgaris HOM05D000840 ORTHO05D000670 7.9e-12 74.3 122 41.0
SGA_v2.0_scaffold172G38982 Striga asiatica HOM05D000840 ORTHO05D000670 1.0e-11 73.9 71 60.6
Cc00_g09670 Coffea canephora HOM05D000840 ORTHO05D000670 1.4e-11 73.6 90 53.3
Nitab4.5_0004104g0090 Nicotiana tabacum HOM05D000840 ORTHO05D000670 1.4e-11 73.6 126 42.1
Oeu027053.1 Olea europaea HOM05D000840 ORTHO05D000670 1.8e-11 73.2 98 48.0
Rhsim01G0143500 Rhododendron simsii HOM05D000840 ORTHO05D000670 1.8e-11 73.2 85 57.6
Hund15769 Selenicereus undatus HOM05D000840 ORTHO05D000670 1.8e-11 73.2 84 50.0
Actinidia01522 Actinidia chinensis HOM05D000840 ORTHO05D000670 2.3e-11 72.8 97 47.4
Psat5g304200 Pisum sativum HOM05D000840 ORTHO05D000670 2.3e-11 72.8 86 50.0
GSVIVG01022350001 Vitis vinifera HOM05D000840 ORTHO05D000670 2.3e-11 72.8 90 52.2
ClCG09G013490 Citrullus lanatus HOM05D000840 ORTHO05D000670 3.0e-11 72.4 86 52.3
CsaV3_7G006140 Cucumis sativus L. HOM05D000840 ORTHO05D000670 3.0e-11 72.4 86 51.2
DCAR_007818 Daucus carota HOM05D000840 ORTHO05D000670 3.0e-11 72.4 95 48.4
Lalb_Chr01g0012231 Lupinus albus HOM05D000840 ORTHO05D000670 3.0e-11 72.4 95 50.5
Lsat_1_v5_gn_5_51740 Lactuca sativa HOM05D000840 ORTHO05D000670 3.9e-11 72.0 86 50.0
vmacro21082 Vaccinium macrocarpon HOM05D000840 ORTHO05D000670 3.9e-11 72.0 131 42.7
Medtr2g104400 Medicago truncatula HOM05D000840 ORTHO05D000670 6.7e-11 71.2 71 56.3
Lalb_Chr24g0395381 Lupinus albus HOM05D000840 ORTHO05D000670 1.5e-10 70.1 93 49.5
Sed0011014 Sechium edule HOM05D000840 ORTHO05D000670 1.5e-10 70.1 92 51.1
THA.LOC104808194 Tarenaya hassleriana HOM05D000840 ORTHO05D000670 1.5e-10 70.1 128 40.6
CiPaw.13G017400 Carya illinoinensis HOM05D000840 ORTHO05D000670 2.0e-10 69.7 70 60.0
Sc14g0004830 Simmondsia chinensis HOM05D000840 ORTHO05D000670 2.0e-10 69.7 130 38.5
MD07G1041400 Malus domestica HOM05D000840 ORTHO05D000670 2.6e-10 69.3 83 50.6
Peaxi162Scf00195g00830 Petunia axillaris HOM05D000840 ORTHO05D000670 2.6e-10 69.3 126 41.3
Potri.001G204900 Populus trichocarpa HOM05D000840 ORTHO05D000670 3.3e-10 68.9 92 47.8
Ah.10g029750 Amaranthus hybridus HOM05D000840 ORTHO05D000670 4.4e-10 68.6 68 51.5
Solyc04g009500.4 Solanum lycopersicum HOM05D000840 ORTHO05D000670 5.7e-10 68.2 126 39.7
Sopen04g004660 Solanum pennellii HOM05D000840 ORTHO05D000670 5.7e-10 68.2 126 39.7
CAN.G186.26 Capsicum annuum HOM05D000840 ORTHO05D000670 7.4e-10 67.8 71 52.1
MBI04_g25415_MAGBIO Magnolia biondii HOM05D000840 ORTHO05D000670 9.7e-10 67.4 71 56.3
CANSAT56G3623 Cannabis sativa HOM05D000840 ORTHO05D000670 1.7e-09 66.6 71 56.3
MD02G1272500 Malus domestica HOM05D000840 ORTHO05D000670 1.7e-09 66.6 87 46.0
ClCG09G013510 Citrullus lanatus HOM05D000840 ORTHO05D000670 2.2e-09 66.2 87 50.6
Lj3g0017183 Lotus japonicus HOM05D000840 ORTHO05D000670 2.2e-09 66.2 84 50.0
Psat7g257920 Pisum sativum HOM05D000840 ORTHO05D000670 2.2e-09 66.2 133 41.4
Prupe.2G048200 Prunus persica HOM05D000840 ORTHO05D000670 3.7e-09 65.5 67 53.7
Ca_20456_v3 Cicer arietinum L. HOM05D000840 ORTHO05D000670 6.3e-09 64.7 86 48.8
MD03G1032600 Malus domestica HOM05D000840 ORTHO05D000670 1.4e-08 63.5 96 43.8
Medtr4g009740 Medicago truncatula HOM05D000840 ORTHO05D000670 1.4e-08 63.5 81 53.1
Cpa.g.sc10.131 Carica papaya HOM05D000840 ORTHO05D000670 1.8e-08 63.2 71 53.5
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 2.4e-08 62.8 100 46.0
PSO210G0831 Papaver somniferum HOM05D000840 ORTHO05D000670 3.1e-08 62.4 130 40.0
Peaxi162Scf00583g00536 Petunia axillaris HOM05D000840 ORTHO05D000670 3.1e-08 62.4 91 48.4
vmacro21084 Vaccinium macrocarpon HOM05D000840 ORTHO05D000670 3.1e-08 62.4 97 44.3
Potri.001G033400 Populus trichocarpa HOM05D000840 ORTHO05D000670 4.1e-08 62.0 124 37.9
MBI12_g07473_MAGBIO Magnolia biondii HOM05D000840 ORTHO05D000670 5.3e-08 61.6 95 47.4
Lj7C492G1 Lonicera japonica HOM05D000840 ORTHO05D000670 9.1e-08 60.8 102 46.1
Hund13419 Selenicereus undatus HOM05D000840 ORTHO05D000670 9.1e-08 60.8 96 38.5
Eucgr.G03197 Eucalyptus grandis HOM05D000840 ORTHO05D000670 1.2e-07 60.5 84 45.2
Phvul.010G157900 Phaseolus vulgaris HOM05D000840 ORTHO05D000670 1.2e-07 60.5 84 47.6
ClCG11G012980 Citrullus lanatus HOM05D000840 ORTHO05D000670 1.5e-07 60.1 62 54.8
PSO210G4621 Papaver somniferum HOM05D000840 ORTHO05D000670 1.5e-07 60.1 130 39.2
VMungo0331G0091 Vigna mungo HOM05D000840 ORTHO05D000670 1.5e-07 60.1 84 46.4
CDE04G1840 Ceratophyllum demersum HOM05D000840 ORTHO05D000670 2.0e-07 59.7 125 36.8
TPR.G38700 Trifolium pratense HOM05D000840 ORTHO05D000670 2.0e-07 59.7 80 50.0
unitig_46.g18379 Utricularia gibba HOM05D000840 ORTHO05D000670 2.0e-07 59.7 74 51.4
Prupe.6G027400 Prunus persica HOM05D000840 ORTHO05D000670 3.4e-07 58.9 88 47.7
HanXRQChr05g0129761 Helianthus annuus HOM05D000840 ORTHO05D000670 4.5e-07 58.5 96 41.7
CDE04G1049 Ceratophyllum demersum HOM05D000840 ORTHO05D000670 5.9e-07 58.2 89 43.8
RcHm_v2.0_Chr4g0390581 Rosa chinensis HOM05D000840 ORTHO05D000670 5.9e-07 58.2 57 52.6
Sabra01G0023700 Salix brachista HOM05D000840 ORTHO05D000670 5.9e-07 58.2 73 47.9
unitig_48.g30294 Utricularia gibba HOM05D000840 ORTHO05D000670 5.9e-07 58.2 68 54.4
BraA08t35072Z Brassica rapa HOM05D000840 ORTHO05D000670 7.7e-07 57.8 129 37.2
Aa31LG4G800 Aethionema arabicum HOM05D000840 ORTHO05D000670 1.0e-06 57.4 89 40.4
BraA09t41494Z Brassica rapa HOM05D000840 ORTHO05D000670 1.3e-06 57.0 98 37.8
arahy.Tifrunner.gnm1.ann1.PEC4AR Arachis hypogaea HOM05D000840 ORTHO05D000670 1.7e-06 56.6 82 43.9
RcHm_v2.0_Chr4g0409611 Rosa chinensis HOM05D000840 ORTHO05D000670 2.2e-06 56.2 66 50.0
Sp1g14070 Schrenkiella parvula HOM05D000840 ORTHO05D000670 2.2e-06 56.2 91 41.8
AL1G27930 Arabidopsis lyrata HOM05D000840 ORTHO05D000670 2.9e-06 55.8 129 34.9
FAN12G2429 Fragaria x ananassa HOM05D000840 ORTHO05D000670 3.8e-06 55.5 57 52.6
Nn7g36966 Nelumbo nucifera HOM05D000840 ORTHO05D000670 3.8e-06 55.5 69 49.3
HPP92_017081 Vanilla planifolia HOM05D000840 ORTHO05D000670 3.8e-06 55.5 86 44.2
AT1G15780 Arabidopsis thaliana HOM05D000840 ORTHO05D000670 5.0e-06 55.1 129 34.9
Lalb_Chr04g0262271 Lupinus albus HOM05D000840 ORTHO05D000670 5.0e-06 55.1 84 45.2
A08p31500 Brassica napus HOM05D000840 ORTHO05D000670 6.5e-06 54.7 129 36.4
BolC5t30133H Brassica oleracea HOM05D000840 ORTHO05D000670 8.5e-06 54.3 129 36.4
Thhalv10006572m.g Eutrema salsugineum HOM05D000840 ORTHO05D000670 8.5e-06 54.3 129 34.9
FAN06G1526 Fragaria x ananassa HOM05D000840 ORTHO05D000670 8.5e-06 54.3 75 44.0
FAN07G2847 Fragaria x ananassa HOM05D000840 ORTHO05D000670 8.5e-06 54.3 79 44.3


User provided reference genes

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