Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p085812 Quercus lobata HOM05D003504 ORTHO05D004006 4.0e-218 761.1 390 100.0
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 4.8e-195 684.5 471 79.8
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 5.9e-193 677.6 471 78.8
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 7.7e-193 677.2 471 78.8
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 3.8e-192 674.9 471 78.3
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 6.5e-192 674.1 471 78.3
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 6.5e-192 674.1 471 78.3
Gohir.A12G174150 Gossypium hirsutum HOM05D003504 ORTHO05D004006 6.5e-192 674.1 471 78.3
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 6.5e-192 674.1 471 78.3
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 6.5e-192 674.1 471 78.3
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 1.4e-191 672.9 471 77.9
Ca_24183_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 2.5e-191 672.2 471 77.9
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 4.2e-191 671.4 471 78.1
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 5.5e-191 671.0 471 77.9
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 5.5e-191 671.0 471 77.9
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 7.2e-191 670.6 471 78.1
MD05G1233200 Malus domestica HOM05D003504 ORTHO05D004006 7.2e-191 670.6 471 77.3
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 9.4e-191 670.2 471 77.9
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 9.4e-191 670.2 471 77.9
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 1.2e-190 669.8 471 77.3
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.2e-190 669.8 471 77.3
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 2.7e-190 668.7 471 77.5
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 3.6e-190 668.3 471 77.1
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 6.1e-190 667.5 471 77.1
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 7.9e-190 667.2 471 77.3
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 7.9e-190 667.2 471 77.3
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 1.0e-189 666.8 471 77.7
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.0e-189 666.8 471 77.1
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 1.4e-189 666.4 471 77.5
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 2.3e-189 665.6 471 77.3
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 2.3e-189 665.6 471 77.1
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 2.3e-189 665.6 471 76.9
CSS0025770 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 3.0e-189 665.2 471 77.1
Cpa.g.sc34.42 Carica papaya HOM05D003504 ORTHO05D004006 3.0e-189 665.2 471 77.1
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 3.9e-189 664.8 471 77.1
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 3.9e-189 664.8 471 76.9
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 5.1e-189 664.5 471 76.9
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 8.8e-189 663.7 471 77.3
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 8.8e-189 663.7 471 77.1
Nn1g07198 Nelumbo nucifera HOM05D003504 ORTHO05D004006 1.1e-188 663.3 471 76.4
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 1.1e-188 663.3 471 76.6
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 2.6e-188 662.1 471 76.9
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 2.6e-188 662.1 471 77.1
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 3.3e-188 661.8 470 76.8
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 3.3e-188 661.8 471 76.4
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 3.3e-188 661.8 470 76.8
vmacro15992 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 3.3e-188 661.8 471 77.1
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 5.7e-188 661.0 471 76.9
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 7.4e-188 660.6 470 76.8
Peaxi162Scf01205g00167 Petunia axillaris HOM05D003504 ORTHO05D004006 9.7e-188 660.2 470 76.6
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 9.7e-188 660.2 471 76.2
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 1.3e-187 659.8 471 76.4
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 2.8e-187 658.7 471 76.0
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 2.8e-187 658.7 471 76.4
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 3.7e-187 658.3 471 76.2
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 4.8e-187 657.9 471 76.2
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 1.4e-186 656.4 470 76.4
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 1.8e-186 656.0 471 75.8
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 1.8e-186 656.0 471 75.8
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 1.8e-186 656.0 471 75.8
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 1.8e-186 656.0 471 75.8
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 1.8e-186 656.0 471 75.8
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 1.8e-186 656.0 471 75.8
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 1.8e-186 656.0 471 75.8
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 1.8e-186 656.0 471 75.4
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 1.8e-186 656.0 473 76.7
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 2.4e-186 655.6 470 75.7
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 2.4e-186 655.6 471 76.2
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 3.1e-186 655.2 481 74.2
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 4.1e-186 654.8 471 75.6
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 4.1e-186 654.8 471 75.6
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 4.1e-186 654.8 470 76.4
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 4.1e-186 654.8 471 75.6
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 5.3e-186 654.4 471 75.4
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 5.3e-186 654.4 471 75.4
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 7.0e-186 654.1 471 75.6
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 9.1e-186 653.7 471 74.5
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 9.1e-186 653.7 471 75.4
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 2.0e-185 652.5 471 75.4
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 2.0e-185 652.5 471 75.4
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 2.6e-185 652.1 468 75.9
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 3.5e-185 651.7 471 75.4
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 1.0e-184 650.2 471 75.4
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 1.7e-184 649.4 471 75.2
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 2.2e-184 649.0 471 74.9
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 2.9e-184 648.7 471 74.9
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 3.8e-184 648.3 471 74.1
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 3.8e-184 648.3 471 74.1
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 5.5e-183 644.4 471 73.9
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 1.8e-181 639.4 471 74.1
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 1.8e-181 639.4 470 73.8
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 3.9e-181 638.3 476 74.6
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 1.5e-180 636.3 471 73.2
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 2.8e-179 632.1 471 73.0
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 1.2e-177 626.7 470 74.3
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 7.7e-177 624.0 471 72.0
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 1.1e-175 620.2 448 75.9
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 3.4e-164 582.0 469 67.6
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 1.7e-163 579.7 470 68.1
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 3.5e-161 572.0 433 72.7
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 2.3e-160 569.3 471 65.8
Gohir.D12G176866 Gossypium hirsutum HOM05D003504 ORTHO05D004006 4.9e-147 525.0 386 75.6
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 5.0e-144 515.0 469 60.8
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 5.0e-144 515.0 472 60.4
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 7.3e-143 511.1 472 60.0
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.1e-142 509.6 472 58.9
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 3.4e-140 502.3 470 58.7
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 3.4e-140 502.3 472 58.9
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 9.9e-124 447.6 471 55.2
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 1.2e-121 440.7 389 62.5
RcHm_v2.0_Chr5g0024371 Rosa chinensis HOM05D003504 ORTHO05D004006 1.9e-114 416.8 344 66.9
Os03g0328000 Oryza sativa ssp. japonica HOM05D003504 ORTHO05D004006 8.7e-112 407.9 281 79.0
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 1.9e-111 406.8 483 49.3
AL727U10010 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 1.3e-99 367.5 203 95.1
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 2.9e-99 366.3 321 64.5
Phvul.009G114325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 8.2e-78 295.0 273 63.4
RcHm_v2.0_Chr5g0024381 Rosa chinensis HOM05D003504 ORTHO05D004006 3.2e-58 229.9 125 96.0
Prupe.3G108400 Prunus persica HOM05D003504 ORTHO05D004006 4.2e-58 229.6 304 50.3
Potri.004G000750 Populus trichocarpa HOM05D003504 ORTHO05D004006 6.1e-41 172.6 99 91.9
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 8.0e-33 145.6 390 32.3
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.8e-24 117.9 58 96.6
Nitab4.5_0000348g0150 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.8e-24 117.9 390 29.0
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 3.4e-23 113.6 58 93.1
CAN.G338.64 Capsicum annuum HOM05D003504 ORTHO05D004006 1.7e-19 101.3 53 90.6
unitig_0.g2295 Utricularia gibba HOM05D003504 ORTHO05D004006 3.0e-19 100.5 72 76.4
CAN.G307.30 Capsicum annuum HOM05D002685 ORTHO05D001487 1.2e-17 95.1 54 81.5
CAN.G151.23 Capsicum annuum HOM05D003504 ORTHO05D004006 4.7e-17 93.2 54 77.8
CAN.G861.1 Capsicum annuum HOM05D003504 ORTHO05D004006 6.2e-17 92.8 54 77.8
CAN.G578.10 Capsicum annuum HOM05D003504 ORTHO05D001487 1.4e-16 91.7 59 72.9
Cc03_g11030 Coffea canephora HOM05D003504 ORTHO05D004006 1.5e-15 88.2 49 85.7
AagrBONN_evm.TU.Sc2ySwM_362.1411 Anthoceros agrestis HOM05D003504 ORTHO05D004006 1.5e-10 71.6 246 27.6
CAN.G103.4 Capsicum annuum HOM05D002685 ORTHO05D001487 5.8e-07 59.7 31 83.9
MCO09G216 Micromonas commoda HOM05D003504 ORTHO05D004006 1.3e-06 58.5 232 24.1
unitig_0.g393 Utricularia gibba HOM05D003504 ORTHO05D004006 1.7e-06 58.2 41 70.7


User provided reference genes

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