Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p085746 Quercus lobata HOM05D006460 ORTHO05D008143 2.5e-65 251.9 121 100.0
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 5.0e-42 174.5 108 80.6
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 2.0e-27 125.9 109 56.0
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 1.3e-26 123.2 107 56.1
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 6.6e-26 120.9 111 58.6
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 1.1e-25 120.2 111 57.7
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 1.1e-25 120.2 107 54.2
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 1.5e-25 119.8 107 57.9
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 1.9e-25 119.4 111 56.8
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 3.3e-25 118.6 107 51.4
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 4.3e-25 118.2 111 56.8
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 7.3e-25 117.5 107 57.9
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 7.3e-25 117.5 107 54.2
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 1.2e-24 116.7 107 58.9
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 1.6e-24 116.3 120 51.7
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 1.6e-24 116.3 111 57.7
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 2.1e-24 115.9 108 53.7
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 4.7e-24 114.8 108 53.7
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 1.0e-23 113.6 107 58.9
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 1.8e-23 112.8 110 56.4
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 1.8e-23 112.8 108 54.6
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 2.3e-23 112.5 107 53.3
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 2.3e-23 112.5 107 52.3
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 6.8e-23 110.9 103 51.5
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 8.9e-23 110.5 110 52.7
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 8.9e-23 110.5 105 53.3
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 8.9e-23 110.5 114 50.9
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 1.2e-22 110.2 114 50.0
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 1.5e-22 109.8 107 54.2
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 2.0e-22 109.4 107 52.3
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 2.0e-22 109.4 105 54.3
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 3.4e-22 108.6 119 46.2
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 4.4e-22 108.2 107 48.6
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 7.5e-22 107.5 110 48.2
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 9.8e-22 107.1 108 50.9
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 2.2e-21 105.9 105 54.3
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 2.9e-21 105.5 106 54.7
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 2.9e-21 105.5 107 48.6
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 2.9e-21 105.5 103 50.5
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 2.9e-21 105.5 107 50.5
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 3.7e-21 105.1 106 54.7
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 3.7e-21 105.1 107 44.9
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 3.7e-21 105.1 107 44.9
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 3.7e-21 105.1 107 53.3
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 4.9e-21 104.8 106 56.6
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 4.9e-21 104.8 109 49.5
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 6.4e-21 104.4 109 50.5
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 1.4e-20 103.2 108 48.1
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 4.1e-20 101.7 107 48.6
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 4.1e-20 101.7 107 49.5
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 5.4e-20 101.3 107 47.7
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 1.2e-19 100.1 119 47.1
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 2.7e-19 99.0 108 50.9
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 2.7e-19 99.0 108 50.9
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 4.6e-19 98.2 107 48.6
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 1.0e-18 97.1 105 51.4
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 3.0e-18 95.5 107 48.6
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 3.9e-18 95.1 107 49.5
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 3.9e-18 95.1 106 51.9
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 1.1e-17 93.6 106 48.1
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 1.1e-17 93.6 107 45.8
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 1.1e-17 93.6 107 43.9
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 1.5e-17 93.2 106 50.0
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 1.5e-17 93.2 108 46.3
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 1.9e-17 92.8 107 45.8
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 4.3e-17 91.7 107 46.7
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 7.3e-17 90.9 110 40.9
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 7.3e-17 90.9 107 45.8
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 9.5e-17 90.5 107 42.1
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 9.5e-17 90.5 107 47.7
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 1.2e-16 90.1 106 49.1
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 1.2e-16 90.1 106 49.1
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 1.6e-16 89.7 106 49.1
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 2.1e-16 89.4 106 47.2
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 2.1e-16 89.4 106 49.1
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 2.1e-16 89.4 106 46.2
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 2.1e-16 89.4 107 46.7
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 2.8e-16 89.0 106 47.2
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 4.7e-16 88.2 107 41.1
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 4.7e-16 88.2 107 47.7
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 6.2e-16 87.8 107 41.1
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 8.1e-16 87.4 112 42.0
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 8.1e-16 87.4 106 42.5
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 1.8e-15 86.3 106 44.3
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.3e-15 85.9 107 41.1
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 4.0e-15 85.1 123 39.8
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 6.8e-15 84.3 107 41.1
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 1.2e-14 83.6 103 41.7
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 1.5e-14 83.2 115 37.4
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 3.4e-14 82.0 113 37.2
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 5.8e-14 81.3 103 40.8
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 9.8e-14 80.5 109 42.2
unitig_578.g16638 Utricularia gibba HOM05D006460 ORTHO05D008143 1.7e-13 79.7 107 41.1
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 2.2e-13 79.3 126 37.3
MD17G1281000 Malus domestica HOM05D006460 ORTHO05D008143 8.3e-13 77.4 84 51.2
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 4.3e-09 65.1 106 34.0
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 5.6e-09 64.7 105 34.3
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 7.3e-09 64.3 52 57.7
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 4.0e-07 58.5 106 31.1
SEGI_40178 Sequoiadendron giganteum HOM05D006460 ORTHO05D008143 2.6e-06 55.8 130 26.9
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 5.8e-06 54.7 37 56.8


User provided reference genes

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