Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p085078 Quercus lobata HOM05D003504 ORTHO05D004006 9.0e-40 166.4 80 100.0
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 7.9e-20 100.1 79 67.1
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 1.0e-19 99.8 79 65.8
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 1.8e-19 99.0 79 65.8
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 1.8e-19 99.0 79 65.8
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 1.8e-19 99.0 79 65.8
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 2.3e-19 98.6 66 74.2
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 2.3e-19 98.6 66 74.2
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 3.0e-19 98.2 66 74.2
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 3.0e-19 98.2 66 72.7
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 3.0e-19 98.2 66 74.2
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 3.0e-19 98.2 79 65.8
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 3.9e-19 97.8 57 77.2
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 3.9e-19 97.8 79 65.8
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 3.9e-19 97.8 66 74.2
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 3.9e-19 97.8 79 65.8
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 3.9e-19 97.8 66 72.7
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 3.9e-19 97.8 66 74.2
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 3.9e-19 97.8 66 74.2
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 3.9e-19 97.8 66 74.2
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 3.9e-19 97.8 66 74.2
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 3.9e-19 97.8 66 74.2
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 3.9e-19 97.8 79 65.8
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 3.9e-19 97.8 66 74.2
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 3.9e-19 97.8 79 65.8
Solyc08g016060.1 Solanum lycopersicum HOM05D003504 ORTHO05D004006 3.9e-19 97.8 66 74.2
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 3.9e-19 97.8 66 74.2
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 3.9e-19 97.8 79 65.8
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 5.1e-19 97.4 79 65.8
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 5.1e-19 97.4 66 72.7
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 5.1e-19 97.4 57 77.2
vmacro15991 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 5.1e-19 97.4 79 64.6
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 6.7e-19 97.1 66 72.7
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 6.7e-19 97.1 79 64.6
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 6.7e-19 97.1 79 64.6
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 6.7e-19 97.1 79 64.6
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 6.7e-19 97.1 66 72.7
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 6.7e-19 97.1 79 64.6
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 6.7e-19 97.1 66 72.7
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 8.8e-19 96.7 79 63.3
Ca_24184_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 1.1e-18 96.3 79 64.6
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 1.1e-18 96.3 79 64.6
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 1.1e-18 96.3 79 64.6
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 1.1e-18 96.3 79 64.6
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 1.1e-18 96.3 79 64.6
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 1.5e-18 95.9 79 63.3
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 1.5e-18 95.9 79 64.6
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 1.5e-18 95.9 79 64.6
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 1.5e-18 95.9 79 63.3
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 1.5e-18 95.9 66 72.7
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 1.5e-18 95.9 79 63.3
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 1.5e-18 95.9 66 71.2
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 1.5e-18 95.9 79 64.6
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 1.5e-18 95.9 79 64.6
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 1.5e-18 95.9 66 71.2
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 2.0e-18 95.5 79 64.6
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 2.0e-18 95.5 79 64.6
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 2.0e-18 95.5 79 64.6
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 2.0e-18 95.5 79 64.6
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 2.0e-18 95.5 79 63.3
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 2.0e-18 95.5 57 73.7
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 2.0e-18 95.5 65 73.8
CSS0025770 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 2.6e-18 95.1 46 93.5
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 2.6e-18 95.1 44 95.5
Nn1g07198 Nelumbo nucifera HOM05D003504 ORTHO05D004006 2.6e-18 95.1 79 62.0
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 2.6e-18 95.1 44 95.5
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 2.6e-18 95.1 79 62.0
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 2.6e-18 95.1 79 62.0
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 2.6e-18 95.1 74 63.5
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 2.6e-18 95.1 74 63.5
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 3.3e-18 94.7 74 63.5
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 3.3e-18 94.7 79 63.3
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 3.3e-18 94.7 79 63.3
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 3.3e-18 94.7 45 91.1
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 3.3e-18 94.7 74 64.9
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 4.4e-18 94.4 79 64.6
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 4.4e-18 94.4 79 62.0
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 4.4e-18 94.4 79 62.0
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 5.7e-18 94.0 79 63.3
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 5.7e-18 94.0 79 63.3
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 5.7e-18 94.0 79 64.6
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 5.7e-18 94.0 70 64.3
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 7.4e-18 93.6 79 62.0
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 9.7e-18 93.2 79 63.3
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 9.7e-18 93.2 57 71.9
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 9.7e-18 93.2 79 63.3
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 2.2e-17 92.0 79 62.0
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 2.2e-17 92.0 53 77.4
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 3.7e-17 91.3 79 62.0
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 3.7e-17 91.3 79 62.0
CDE09G0213 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 4.8e-17 90.9 56 71.4
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 6.3e-17 90.5 79 58.2
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 1.4e-16 89.4 48 83.3
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 1.4e-16 89.4 48 83.3
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 1.4e-16 89.4 48 83.3
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 1.4e-16 89.4 48 83.3
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 1.4e-16 89.4 48 83.3
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 1.4e-16 89.4 48 83.3
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 1.4e-16 89.4 48 83.3
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 1.8e-16 89.0 48 81.2
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 1.8e-16 89.0 48 81.2
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 1.8e-16 89.0 48 81.2
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 1.8e-16 89.0 48 81.2
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 1.8e-16 89.0 48 81.2
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 1.8e-16 89.0 48 81.2
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 5.3e-16 87.4 79 57.0
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 1.6e-15 85.9 66 60.6
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 1.6e-15 85.9 48 79.2
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.6e-15 85.1 79 50.6
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.2e-14 82.0 82 52.4
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.2e-14 82.0 79 53.2
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.9e-14 81.6 82 50.0
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.1e-13 79.7 57 57.9
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 1.9e-13 79.0 57 54.4
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 1.2e-12 76.3 45 75.6
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.6e-12 75.9 82 47.6
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 2.1e-12 75.5 44 75.0


User provided reference genes

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